Wall clock time and date at job start Tue Mar 31 2020 11:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00369 * 2 1 4 4 H 1.48501 * 109.47633 * 240.00221 * 3 2 1 5 5 H 1.48504 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47285 * 120.00236 * 3 2 1 7 7 C 1.37879 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47213 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.46986 * 180.02562 * 11 10 9 13 13 O 1.42105 * 110.54530 * 291.62628 * 12 11 10 14 14 O 1.42101 * 110.54333 * 68.37799 * 12 11 10 15 15 N 1.65599 * 104.44748 * 180.02562 * 12 11 10 16 16 C 1.46496 * 120.00146 * 65.00260 * 15 12 11 17 17 H 1.09001 * 109.54841 * 24.99890 * 16 15 12 18 18 C 1.53186 * 109.54230 * 264.82315 * 16 15 12 19 19 C 1.53093 * 109.16452 * 183.15230 * 18 16 15 20 20 O 1.42905 * 109.41476 * 57.60639 * 19 18 16 21 21 C 1.42907 * 114.09725 * 298.84384 * 20 19 18 22 22 H 1.08996 * 109.48207 * 301.17246 * 21 20 19 23 23 C 1.53004 * 109.47849 * 181.15204 * 21 20 19 24 24 C 1.52998 * 117.49915 * 128.74658 * 23 21 20 25 25 C 1.52998 * 117.49787 * 60.08852 * 23 21 20 26 26 C 1.53104 * 109.48623 * 61.11153 * 21 20 19 27 27 H 0.97002 * 119.99124 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46554 * 60.00704 * 9 7 2 29 29 H 1.08995 * 109.47565 * 300.00769 * 9 7 2 30 30 H 1.09004 * 109.46811 * 60.00336 * 10 9 7 31 31 H 1.09005 * 109.47229 * 300.00471 * 10 9 7 32 32 H 1.09003 * 109.46593 * 60.00151 * 11 10 9 33 33 H 1.08994 * 109.46870 * 300.00519 * 11 10 9 34 34 H 0.97001 * 120.00004 * 244.99733 * 15 12 11 35 35 H 1.09004 * 109.51920 * 303.05347 * 18 16 15 36 36 H 1.08999 * 109.52297 * 63.18221 * 18 16 15 37 37 H 1.08993 * 109.47921 * 177.59118 * 19 18 16 38 38 H 1.09003 * 109.47809 * 297.62051 * 19 18 16 39 39 H 1.08998 * 115.55019 * 274.41511 * 23 21 20 40 40 H 1.09009 * 117.50018 * 359.97438 * 24 23 21 41 41 H 1.08992 * 117.50441 * 145.01896 * 24 23 21 42 42 H 1.09001 * 117.49732 * 214.97660 * 25 23 21 43 43 H 1.08997 * 117.50234 * 359.97438 * 25 23 21 44 44 H 1.09004 * 109.59078 * 182.57496 * 26 21 20 45 45 H 1.08998 * 109.45414 * 62.38972 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 16 2.6587 -6.3659 -0.0004 13 8 3.3565 -6.4262 -1.2369 14 8 3.3545 -6.4264 1.2371 15 7 1.7083 -7.7220 -0.0019 16 6 0.8501 -8.0138 -1.1528 17 1 1.2609 -7.5389 -2.0437 18 6 -0.5601 -7.4764 -0.8897 19 6 -1.4689 -7.8545 -2.0622 20 8 -1.4688 -9.2743 -2.2247 21 6 -0.1846 -9.8277 -2.5197 22 1 0.2005 -9.3834 -3.4374 23 6 -0.3108 -11.3419 -2.6998 24 6 0.2871 -11.9547 -3.9678 25 6 -1.2319 -11.8466 -3.8123 26 6 0.7775 -9.5287 -1.3669 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8904 29 1 0.6244 -2.5571 0.8895 30 1 2.8717 -3.6045 0.8895 31 1 2.8718 -3.6045 -0.8905 32 1 0.8537 -5.0445 -0.8915 33 1 0.8530 -5.0451 0.8885 34 1 1.7199 -8.3233 0.7592 35 1 -0.9507 -7.9132 0.0295 36 1 -0.5239 -6.3915 -0.7908 37 1 -2.4837 -7.5118 -1.8607 38 1 -1.1005 -7.3842 -2.9740 39 1 -0.2588 -11.9302 -1.7837 40 1 0.7700 -11.2791 -4.6740 41 1 0.7320 -12.9463 -3.8861 42 1 -1.7856 -12.7673 -3.6283 43 1 -1.7483 -11.1001 -4.4157 44 1 1.7692 -9.9102 -1.6102 45 1 0.4148 -10.0082 -0.4577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162642409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:12 Heat of formation + Delta-G solvation = -141.751505 kcal Electronic energy + Delta-G solvation = -24958.969261 eV Core-core repulsion = 21295.513592 eV Total energy + Delta-G solvation = -3663.455670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76953 -38.26233 -37.79762 -37.10237 -36.55037 -36.48124 -34.18539 -31.92080 -31.87550 -29.66613 -25.88645 -25.59774 -24.73052 -23.12116 -22.43328 -21.65365 -21.55069 -20.36326 -18.76578 -18.53549 -17.78747 -17.27506 -17.23575 -16.83763 -16.50635 -16.20946 -15.88271 -15.73002 -15.57112 -15.18180 -14.64066 -14.49708 -14.14813 -14.02126 -13.54788 -13.26081 -13.19890 -13.09333 -13.02866 -12.93672 -12.73847 -12.65436 -12.51814 -12.38712 -12.27803 -12.14721 -12.07161 -11.75352 -11.57355 -11.38333 -11.25755 -11.11049 -10.95174 -10.57255 -10.49807 -10.40871 -8.23059 -6.33800 -0.77657 1.39978 1.42164 1.50122 1.70961 2.39375 2.53258 2.71468 3.10573 3.15935 3.23512 3.56661 3.63758 3.74440 3.80103 3.89480 3.97145 4.01417 4.10569 4.16653 4.30905 4.33979 4.40273 4.44223 4.59624 4.63366 4.73303 4.79945 4.83739 4.90020 4.92680 5.04019 5.05995 5.11799 5.13071 5.26218 5.29582 5.35539 5.45036 5.62955 5.79130 6.07012 6.19484 6.29712 6.81586 7.35414 8.88112 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.002758 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.957699 B =10149.814198 C =10999.031443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.627 3.373 13 O -0.990 6.990 14 O -0.992 6.992 15 N -1.101 6.101 16 C 0.139 3.861 17 H 0.090 0.910 18 C -0.184 4.184 19 C 0.059 3.941 20 O -0.387 6.387 21 C 0.119 3.881 22 H 0.061 0.939 23 C -0.159 4.159 24 C -0.168 4.168 25 C -0.171 4.171 26 C -0.142 4.142 27 H 0.265 0.735 28 H 0.005 0.995 29 H 0.003 0.997 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.427 0.573 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 -24.629 -5.178 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.591 4.591 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.723 3.277 13 O -0.979 6.979 14 O -0.982 6.982 15 N -0.861 5.861 16 C 0.032 3.968 17 H 0.108 0.892 18 C -0.223 4.223 19 C -0.018 4.018 20 O -0.306 6.306 21 C 0.061 3.939 22 H 0.079 0.921 23 C -0.177 4.177 24 C -0.204 4.204 25 C -0.208 4.208 26 C -0.181 4.181 27 H 0.074 0.926 28 H 0.023 0.977 29 H 0.021 0.979 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.264 0.736 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.546 -24.527 -5.306 25.224 hybrid contribution -0.230 1.348 0.458 1.442 sum -2.776 -23.179 -4.848 23.843 Atomic orbital electron populations 1.70059 1.07572 1.27940 1.51302 1.25915 0.95815 1.03156 0.94602 0.85557 0.78385 0.78302 0.79182 1.19234 1.20638 1.19312 1.21715 0.93716 0.92568 1.51133 0.92239 1.18950 0.93975 0.91692 0.95990 1.21315 0.98686 0.92473 1.02054 1.30626 1.16609 1.13724 1.13166 1.04284 0.75207 0.75389 0.72863 1.93535 1.71243 1.86293 1.46878 1.93539 1.71953 1.86452 1.46261 1.55362 1.61371 1.41021 1.28333 1.21017 0.89983 0.97861 0.87934 0.89232 1.22943 0.95168 1.02856 1.01371 1.22667 1.01389 0.80936 0.96825 1.87952 1.29778 1.21286 1.91580 1.21657 0.83390 0.92491 0.96377 0.92080 1.22203 1.07333 0.93261 0.94922 1.23119 0.96133 1.02871 0.98321 1.22894 0.93180 1.03109 1.01587 1.22416 1.01292 0.93848 1.00576 0.92630 0.97688 0.97856 0.91643 0.91538 0.83621 0.83362 0.73641 0.89193 0.89691 0.87218 0.92365 0.86735 0.88474 0.87166 0.87910 0.89134 0.89373 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.63 4.97 29.85 0.15 1.78 16 10 C -0.11 -4.21 5.16 30.59 0.16 -4.06 16 11 C -0.61 -17.53 5.31 71.98 0.38 -17.15 16 12 S 2.63 72.44 5.44 -56.49 -0.31 72.14 16 13 O -0.99 -33.23 17.39 -127.65 -2.22 -35.45 16 14 O -0.99 -33.49 18.08 -127.65 -2.31 -35.80 16 15 N -1.10 -20.84 5.37 -168.89 -0.91 -21.75 16 16 C 0.14 2.43 2.77 45.11 0.13 2.55 16 17 H 0.09 1.69 7.48 -2.39 -0.02 1.67 16 18 C -0.18 -2.95 5.70 30.69 0.17 -2.78 16 19 C 0.06 0.94 6.84 72.01 0.49 1.43 16 20 O -0.39 -7.03 10.32 -148.98 -1.54 -8.57 16 21 C 0.12 1.85 2.84 30.63 0.09 1.94 16 22 H 0.06 0.95 7.90 -2.39 -0.02 0.93 16 23 C -0.16 -2.14 5.39 -10.79 -0.06 -2.20 16 24 C -0.17 -1.88 10.18 30.62 0.31 -1.57 16 25 C -0.17 -2.19 10.16 30.62 0.31 -1.87 16 26 C -0.14 -2.09 4.94 30.69 0.15 -1.94 16 27 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.15 3.61 6.74 -2.39 -0.02 3.59 16 33 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 34 H 0.43 6.32 8.80 -96.74 -0.85 5.47 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.38 5.88 -2.39 -0.01 1.36 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 1.41 8.11 -2.39 -0.02 1.39 16 40 H 0.10 1.07 8.05 -2.38 -0.02 1.06 16 41 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -73.43 374.44 -1.87 -75.30 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.12 Total: 17.28 kcal Atomic # 6 Polarization: -57.13 SS G_CDS: 2.98 Total: -54.15 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -0.62 Total: -76.66 kcal Atomic # 8 Polarization: -73.76 SS G_CDS: -6.07 Total: -79.82 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 72.44 SS G_CDS: -0.31 Total: 72.14 kcal Total: -73.43 -1.87 -75.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162642409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.456 kcal (2) G-P(sol) polarization free energy of solvation -73.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds