Wall clock time and date at job start Tue Mar 31 2020 11:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.47337 * 180.02562 * 11 10 9 13 13 O 1.42103 * 110.53807 * 291.62529 * 12 11 10 14 14 O 1.42095 * 110.54326 * 68.37177 * 12 11 10 15 15 N 1.65598 * 104.44820 * 179.97438 * 12 11 10 16 16 C 1.46495 * 120.00276 * 64.99762 * 15 12 11 17 17 H 1.09001 * 109.54121 * 24.82303 * 16 15 12 18 18 C 1.53176 * 109.54512 * 264.55402 * 16 15 12 19 19 C 1.53085 * 109.16401 * 297.11366 * 18 16 15 20 20 O 1.42907 * 109.41723 * 302.39290 * 19 18 16 21 21 C 1.42904 * 114.09589 * 61.15095 * 20 19 18 22 22 H 1.09005 * 109.47747 * 58.83748 * 21 20 19 23 23 C 1.53005 * 109.47754 * 178.86114 * 21 20 19 24 24 C 1.53003 * 117.49846 * 8.57136 * 23 21 20 25 25 C 1.53001 * 60.00036 * 252.50553 * 24 23 21 26 26 C 1.53091 * 109.41917 * 298.84682 * 21 20 19 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 29 29 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 30 30 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 31 31 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 32 32 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 33 33 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 34 34 H 0.97001 * 119.99175 * 244.99562 * 15 12 11 35 35 H 1.09001 * 109.52039 * 57.01987 * 18 16 15 36 36 H 1.09000 * 109.52102 * 177.20961 * 18 16 15 37 37 H 1.08996 * 109.48250 * 182.40495 * 19 18 16 38 38 H 1.09008 * 109.48100 * 62.36947 * 19 18 16 39 39 H 1.08994 * 115.54841 * 154.27645 * 23 21 20 40 40 H 1.08998 * 117.49852 * 359.97438 * 24 23 21 41 41 H 1.09003 * 117.49827 * 145.02272 * 24 23 21 42 42 H 1.08999 * 117.50414 * 252.51042 * 25 24 23 43 43 H 1.09006 * 117.49732 * 107.48313 * 25 24 23 44 44 H 1.09002 * 109.52065 * 297.70256 * 26 21 20 45 45 H 1.09000 * 109.56779 * 177.54689 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6590 -6.3660 -0.0004 13 8 3.3566 -6.4262 -1.2370 14 8 3.3549 -6.4264 1.2370 15 7 1.7086 -7.7221 -0.0005 16 6 0.8495 -8.0144 -1.1505 17 1 1.2580 -7.5374 -2.0414 18 6 -0.5621 -7.4829 -0.8839 19 6 -1.1554 -8.2152 0.3224 20 8 -1.1621 -9.6215 0.0683 21 6 0.1353 -10.1826 -0.1415 22 1 0.7559 -10.0017 0.7362 23 6 0.0079 -11.6895 -0.3746 24 6 -1.4011 -12.2614 -0.5443 25 6 -0.6176 -12.5268 0.7428 26 6 0.7804 -9.5293 -1.3666 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 0.8897 29 1 0.6240 -2.5568 -0.8903 30 1 2.8719 -3.6044 -0.8906 31 1 2.8719 -3.6044 0.8894 32 1 0.8533 -5.0451 0.8886 33 1 0.8539 -5.0446 -0.8913 34 1 1.7208 -8.3228 0.7610 35 1 -0.5154 -6.4142 -0.6744 36 1 -1.1880 -7.6564 -1.7593 37 1 -2.1759 -7.8714 0.4906 38 1 -0.5516 -8.0085 1.2061 39 1 0.8096 -12.1447 -0.9560 40 1 -2.2372 -11.5643 -0.4895 41 1 -1.5265 -13.0931 -1.2376 42 1 -0.2276 -13.5330 0.8963 43 1 -0.9383 -12.0041 1.6441 44 1 0.1816 -9.7442 -2.2517 45 1 1.7872 -9.9241 -1.5032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162642546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:15 Heat of formation + Delta-G solvation = -138.479509 kcal Electronic energy + Delta-G solvation = -25275.260754 eV Core-core repulsion = 21611.946968 eV Total energy + Delta-G solvation = -3663.313785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95366 -38.25058 -37.74501 -37.08395 -36.47904 -36.21767 -34.18183 -31.90191 -31.73431 -29.65408 -26.33311 -25.68092 -24.65873 -23.19381 -22.45836 -21.70665 -21.18742 -20.09163 -18.80009 -18.55860 -17.47615 -17.33436 -17.20819 -16.91962 -16.53536 -16.39193 -16.08382 -15.71672 -15.25177 -15.19902 -14.51578 -14.31553 -14.11446 -13.90990 -13.58106 -13.36566 -13.23067 -13.14438 -12.99977 -12.96377 -12.73759 -12.69353 -12.61434 -12.32918 -12.24649 -12.14597 -11.99925 -11.74542 -11.56079 -11.37805 -11.20570 -11.10859 -10.92277 -10.57014 -10.48384 -10.20533 -8.22890 -6.33561 -0.76469 1.40074 1.42233 1.50166 1.73560 2.39522 2.72093 2.74698 3.02140 3.10762 3.19553 3.55405 3.70246 3.76140 3.87245 3.89769 4.00948 4.09134 4.09963 4.27395 4.34486 4.37727 4.38894 4.49648 4.63120 4.65558 4.77319 4.86677 4.89154 4.92370 4.95020 5.05810 5.07620 5.14837 5.16340 5.28385 5.31175 5.42434 5.45409 5.63546 5.79480 6.01377 6.19860 6.32589 6.81922 7.35634 8.88245 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.002767 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.454564 B =10117.738055 C =10762.238767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.628 3.372 13 O -0.988 6.988 14 O -0.993 6.993 15 N -1.105 6.105 16 C 0.138 3.862 17 H 0.101 0.899 18 C -0.183 4.183 19 C 0.059 3.941 20 O -0.385 6.385 21 C 0.115 3.885 22 H 0.062 0.938 23 C -0.159 4.159 24 C -0.166 4.166 25 C -0.177 4.177 26 C -0.143 4.143 27 H 0.265 0.735 28 H 0.003 0.997 29 H 0.005 0.995 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.421 0.579 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.055 0.945 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 -24.991 -1.492 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.591 4.591 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.724 3.276 13 O -0.978 6.978 14 O -0.983 6.983 15 N -0.866 5.866 16 C 0.032 3.968 17 H 0.119 0.881 18 C -0.222 4.222 19 C -0.018 4.018 20 O -0.305 6.305 21 C 0.057 3.943 22 H 0.080 0.920 23 C -0.177 4.177 24 C -0.203 4.203 25 C -0.214 4.214 26 C -0.182 4.182 27 H 0.074 0.926 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.258 0.742 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.582 -24.897 -1.657 25.085 hybrid contribution -0.222 1.340 0.409 1.418 sum -2.804 -23.557 -1.249 23.756 Atomic orbital electron populations 1.70057 1.07568 1.27936 1.51314 1.25914 0.95809 1.03149 0.94612 0.85560 0.78387 0.78321 0.79178 1.20652 1.19302 1.19255 1.21717 0.93711 0.92589 1.51112 0.92258 1.18946 0.93969 0.91680 0.95983 1.21308 0.98677 0.92516 1.02009 1.30618 1.16603 1.13635 1.13214 1.04263 0.75172 0.75338 0.72859 1.93537 1.71185 1.86277 1.46819 1.93536 1.71978 1.86460 1.46343 1.55489 1.61555 1.41018 1.28549 1.21074 0.89865 0.97894 0.87999 0.88145 1.22865 0.96458 1.01583 1.01309 1.22612 1.02501 0.80349 0.96325 1.87912 1.28362 1.22266 1.91946 1.21548 0.84421 0.91658 0.96652 0.92013 1.22400 0.98576 0.92110 1.04573 1.22847 0.94676 1.02718 1.00064 1.22981 1.04336 1.01022 0.93079 1.22367 1.03000 0.92944 0.99861 0.92637 0.97847 0.97704 0.91567 0.91708 0.83407 0.83454 0.74156 0.89709 0.88528 0.87863 0.92638 0.85446 0.88872 0.88107 0.87768 0.89476 0.88590 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.64 4.97 29.85 0.15 1.79 16 10 C -0.11 -4.18 5.16 30.59 0.16 -4.02 16 11 C -0.61 -17.20 5.18 71.98 0.37 -16.82 16 12 S 2.63 71.20 5.44 -56.49 -0.31 70.89 16 13 O -0.99 -32.65 17.40 -127.65 -2.22 -34.87 16 14 O -0.99 -33.21 18.08 -127.65 -2.31 -35.52 16 15 N -1.10 -20.60 4.76 -168.90 -0.80 -21.40 16 16 C 0.14 2.26 3.05 45.11 0.14 2.40 16 17 H 0.10 1.70 7.49 -2.39 -0.02 1.68 16 18 C -0.18 -2.77 5.82 30.68 0.18 -2.59 16 19 C 0.06 0.90 6.68 72.01 0.48 1.38 16 20 O -0.39 -6.56 8.76 -148.98 -1.31 -7.87 16 21 C 0.11 1.68 2.81 30.63 0.09 1.76 16 22 H 0.06 0.88 6.70 -2.38 -0.02 0.87 16 23 C -0.16 -2.07 5.71 -10.79 -0.06 -2.13 16 24 C -0.17 -2.25 9.87 30.60 0.30 -1.94 16 25 C -0.18 -2.31 10.19 30.60 0.31 -2.00 16 26 C -0.14 -1.96 5.09 30.68 0.16 -1.80 16 27 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 29 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.15 3.56 6.88 -2.39 -0.02 3.54 16 34 H 0.42 6.59 7.04 -96.75 -0.68 5.91 16 35 H 0.08 1.31 5.82 -2.39 -0.01 1.29 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.06 0.82 7.63 -2.38 -0.02 0.80 16 39 H 0.13 1.33 8.11 -2.39 -0.02 1.31 16 40 H 0.09 1.52 7.06 -2.39 -0.02 1.50 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -72.96 368.16 -1.37 -74.33 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.29 Total: 17.60 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 2.97 Total: -54.20 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -0.52 Total: -76.26 kcal Atomic # 8 Polarization: -72.42 SS G_CDS: -5.83 Total: -78.25 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 71.20 SS G_CDS: -0.31 Total: 70.89 kcal Total: -72.96 -1.37 -74.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162642546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.151 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds