Wall clock time and date at job start Tue Mar 31 2020 11:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.93067 * 2 1 4 4 C 1.38104 * 120.07267 * 180.02562 * 3 2 1 5 5 C 1.38879 * 119.92827 * 0.02562 * 4 3 2 6 6 N 1.39924 * 120.07136 * 180.02562 * 5 4 3 7 7 C 1.46500 * 119.99995 * 8.92769 * 6 5 4 8 8 C 1.50705 * 109.47138 * 274.99132 * 7 6 5 9 9 H 1.07997 * 119.99887 * 4.98830 * 8 7 6 10 10 C 1.37875 * 119.99675 * 184.98156 * 8 7 6 11 11 N 1.31514 * 119.99911 * 184.97641 * 10 8 7 12 12 Si 1.86798 * 120.00271 * 4.98321 * 10 8 7 13 13 H 1.48507 * 109.47130 * 94.82254 * 12 10 8 14 14 H 1.48496 * 109.47063 * 214.82257 * 12 10 8 15 15 H 1.48498 * 109.47178 * 334.82658 * 12 10 8 16 16 C 1.34778 * 120.00020 * 188.93342 * 6 5 4 17 17 O 1.21281 * 119.99793 * 6.39031 * 16 6 5 18 18 C 1.50699 * 120.00075 * 186.40023 * 16 6 5 19 19 N 1.46504 * 115.55071 * 46.35898 * 18 16 6 20 20 C 1.34772 * 119.99817 * 40.83733 * 19 18 16 21 21 N 1.34777 * 119.99880 * 175.23543 * 20 19 18 22 22 O 1.21585 * 119.99965 * 354.96064 * 20 19 18 23 23 C 1.53004 * 117.51788 * 192.06398 * 18 16 6 24 24 C 1.52998 * 117.49347 * 260.69363 * 18 16 6 25 25 C 1.38872 * 119.85919 * 0.26795 * 5 4 3 26 26 C 1.38124 * 119.92448 * 359.43242 * 25 5 4 27 27 H 1.08994 * 109.47303 * 89.99462 * 1 2 3 28 28 H 1.09003 * 109.46964 * 209.99638 * 1 2 3 29 29 H 1.09001 * 109.46866 * 329.99354 * 1 2 3 30 30 H 1.08001 * 119.96148 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.04041 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47272 * 34.99426 * 7 6 5 33 33 H 1.09001 * 109.47265 * 154.99190 * 7 6 5 34 34 H 0.96993 * 120.00235 * 179.97438 * 11 10 8 35 35 H 0.96998 * 119.99752 * 220.83573 * 19 18 16 36 36 H 0.97000 * 119.99872 * 4.99916 * 21 20 19 37 37 H 0.96997 * 120.00274 * 185.01066 * 21 20 19 38 38 H 1.08994 * 117.49667 * 214.96618 * 23 18 16 39 39 H 1.08998 * 117.49615 * 359.97438 * 23 18 16 40 40 H 1.09002 * 117.50432 * 359.97438 * 24 18 16 41 41 H 1.09008 * 117.49797 * 144.99786 * 24 18 16 42 42 H 1.07996 * 120.03996 * 179.72564 * 25 5 4 43 43 H 1.08002 * 119.96331 * 180.29356 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2739 -0.0001 -0.0016 6 7 5.6731 -0.0001 -0.0016 7 6 6.4057 1.2531 0.1964 8 6 6.5498 1.9648 -1.1242 9 1 6.0686 1.5689 -2.0063 10 6 7.2958 3.1213 -1.2061 11 7 7.3419 3.7956 -2.3343 12 14 8.2414 3.7305 0.2853 13 1 9.6413 3.2394 0.2183 14 1 8.2380 5.2154 0.3008 15 1 7.5967 3.2210 1.5222 16 6 6.3470 -1.1530 -0.1839 17 8 5.7462 -2.1689 -0.4629 18 6 7.8470 -1.1798 -0.0408 19 7 8.3811 -0.5005 1.1422 20 6 7.7571 -0.6255 2.3302 21 7 8.2999 -0.0808 3.4371 22 8 6.7021 -1.2255 2.4025 23 6 8.5815 -2.4298 -0.5296 24 6 8.6799 -1.1253 -1.3231 25 6 3.5781 -1.2019 -0.0078 26 6 2.1969 -1.1984 -0.0010 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6552 2.1327 -0.0004 31 1 4.1164 2.1380 -0.0001 32 1 5.8583 1.8877 0.8934 33 1 7.3939 1.0361 0.6019 34 1 7.8664 4.6095 -2.3919 35 1 9.1839 0.0393 1.0704 36 1 9.1006 0.4623 3.3677 37 1 7.8899 -0.2319 4.3031 38 1 9.4621 -2.7467 0.0290 39 1 7.9798 -3.2333 -0.9544 40 1 8.1430 -1.0705 -2.2701 41 1 9.6254 -0.5840 -1.2865 42 1 4.1163 -2.1382 -0.0131 43 1 1.6551 -2.1327 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163420168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:20 Heat of formation + Delta-G solvation = 17.655133 kcal Electronic energy + Delta-G solvation = -28021.419635 eV Core-core repulsion = 24261.725155 eV Total energy + Delta-G solvation = -3759.694479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79090 -39.32663 -38.10566 -36.43350 -35.40863 -33.70087 -32.72090 -32.05981 -31.23239 -30.24127 -28.11902 -26.34285 -23.72335 -22.91213 -22.39800 -21.72279 -21.58222 -20.34813 -18.87338 -18.18739 -17.39160 -17.10105 -16.59006 -16.24931 -15.27487 -15.07782 -14.85037 -14.50407 -14.43753 -14.01712 -13.82623 -13.57537 -13.46537 -13.25946 -12.92977 -12.70360 -12.49833 -11.92069 -11.83702 -11.77815 -11.43138 -11.32368 -11.08270 -10.95792 -10.79534 -10.60555 -10.47355 -10.28793 -10.06405 -9.76270 -9.60704 -9.08771 -9.01198 -8.81902 -8.38475 -8.21890 -6.94516 -6.28653 -4.28357 1.92278 2.13377 2.74541 2.99788 3.11992 3.14503 3.21858 3.30856 3.56020 4.15480 4.16503 4.47028 4.57106 4.85588 4.96105 5.02272 5.06012 5.41275 5.42953 5.58296 5.70024 5.77965 5.79842 5.90060 6.06088 6.08797 6.21617 6.24008 6.29648 6.37129 6.52919 6.55448 6.62683 6.69592 6.79282 6.95150 7.06134 7.09326 7.25769 7.34188 7.37759 7.89007 7.98226 8.06310 8.35477 8.71689 8.75940 8.82930 9.29813 10.84044 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.006614 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.671453 B = 4232.634129 C = 5448.302455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.132 4.132 3 C -0.104 4.104 4 C -0.141 4.141 5 C 0.173 3.827 6 N -0.514 5.514 7 C 0.192 3.808 8 C -0.535 4.535 9 H 0.079 0.921 10 C 0.079 3.921 11 N -0.886 5.886 12 Si 0.864 3.136 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.264 1.264 16 C 0.574 3.426 17 O -0.533 6.533 18 C 0.100 3.900 19 N -0.703 5.703 20 C 0.705 3.295 21 N -0.867 5.867 22 O -0.571 6.571 23 C -0.159 4.159 24 C -0.138 4.138 25 C -0.162 4.162 26 C -0.107 4.107 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.029 0.971 33 H 0.056 0.944 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.395 0.605 37 H 0.415 0.585 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.168 0.832 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 -6.102 7.999 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.161 4.161 5 C 0.078 3.922 6 N -0.231 5.231 7 C 0.071 3.929 8 C -0.573 4.573 9 H 0.097 0.903 10 C -0.125 4.125 11 N -0.523 5.523 12 Si 0.690 3.310 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.189 1.189 16 C 0.363 3.637 17 O -0.412 6.412 18 C 0.008 3.992 19 N -0.361 5.361 20 C 0.403 3.597 21 N -0.436 5.436 22 O -0.447 6.447 23 C -0.198 4.198 24 C -0.176 4.176 25 C -0.181 4.181 26 C -0.126 4.126 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.134 0.866 31 H 0.154 0.846 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.238 0.762 36 H 0.223 0.777 37 H 0.247 0.753 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.185 0.815 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.174 -6.992 7.679 10.452 hybrid contribution 1.320 1.432 1.044 2.210 sum 2.494 -5.560 8.724 10.641 Atomic orbital electron populations 1.20647 0.92116 1.01738 1.01430 1.19742 0.95373 0.93478 1.04756 1.20695 0.93419 0.97015 1.01129 1.21063 0.94058 0.97624 1.03384 1.17950 0.82514 0.94168 0.97617 1.45328 1.03841 1.09369 1.64553 1.20326 0.93109 0.80906 0.98548 1.21295 1.32818 1.08799 0.94425 0.90251 1.24809 0.96174 0.95909 0.95585 1.69890 1.40349 1.16592 1.25500 0.87038 0.80808 0.79131 0.84029 1.19874 1.20723 1.18898 1.18969 0.86893 0.82466 0.75356 1.90351 1.67445 1.34307 1.49066 1.20185 0.90491 1.00826 0.87673 1.44465 1.31309 1.54086 1.06244 1.15916 0.83508 0.79742 0.80521 1.42899 1.33753 1.58093 1.08841 1.91033 1.21547 1.47365 1.84715 1.23483 1.01769 0.92278 1.02315 1.23319 1.00744 0.99174 0.94332 1.22288 0.94160 0.99644 1.02022 1.20838 0.93852 0.96779 1.01128 0.92068 0.92357 0.92302 0.86602 0.84589 0.95358 0.92657 0.92356 0.76236 0.77711 0.75328 0.87997 0.86960 0.86800 0.87317 0.81526 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.01 36.01 0.36 -0.99 16 2 C -0.13 -2.30 5.88 -104.59 -0.62 -2.92 16 3 C -0.10 -1.93 9.69 -39.61 -0.38 -2.31 16 4 C -0.14 -3.04 9.02 -39.39 -0.36 -3.40 16 5 C 0.17 3.96 6.46 -83.69 -0.54 3.42 16 6 N -0.51 -11.77 2.39 -114.73 -0.27 -12.04 16 7 C 0.19 4.40 2.98 -5.19 -0.02 4.38 16 8 C -0.54 -13.91 9.26 -34.44 -0.32 -14.23 16 9 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 10 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.89 -24.93 13.96 55.43 0.77 -24.15 16 12 Si 0.86 18.57 27.42 -169.99 -4.66 13.91 16 13 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 15 H -0.26 -5.44 6.65 56.52 0.38 -5.07 16 16 C 0.57 12.59 5.07 -10.99 -0.06 12.53 16 17 O -0.53 -12.34 12.88 5.56 0.07 -12.27 16 18 C 0.10 1.75 1.96 -132.97 -0.26 1.49 16 19 N -0.70 -10.82 3.36 -53.50 -0.18 -11.00 16 20 C 0.70 11.62 7.65 -86.92 -0.67 10.96 16 21 N -0.87 -9.80 8.88 27.63 0.25 -9.56 16 22 O -0.57 -12.11 15.31 5.29 0.08 -12.03 16 23 C -0.16 -2.27 9.97 -26.73 -0.27 -2.53 16 24 C -0.14 -2.07 10.13 -26.73 -0.27 -2.34 16 25 C -0.16 -3.50 8.96 -39.39 -0.35 -3.85 16 26 C -0.11 -1.99 9.69 -39.61 -0.38 -2.37 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.14 3.07 6.15 -52.49 -0.32 2.75 16 32 H 0.03 0.68 6.55 -51.93 -0.34 0.34 16 33 H 0.06 1.16 3.16 -51.93 -0.16 1.00 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.40 4.98 8.77 -40.82 -0.36 4.62 16 36 H 0.40 3.23 8.85 -40.82 -0.36 2.87 16 37 H 0.41 4.10 8.93 -40.82 -0.36 3.74 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.11 1.67 7.72 -51.93 -0.40 1.27 16 40 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.11 1.38 8.14 -51.92 -0.42 0.95 16 42 H 0.17 3.82 4.78 -54.82 -0.26 3.56 16 43 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -34.02 353.39 -8.37 -42.39 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -5.53 Total: 19.63 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -4.22 Total: -0.20 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.56 Total: -56.76 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.15 Total: -24.30 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.66 Total: 13.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.02 -8.37 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163420168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.044 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds