Wall clock time and date at job start Tue Mar 31 2020 11:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.93067 * 2 1 4 4 C 1.38104 * 120.07267 * 180.02562 * 3 2 1 5 5 C 1.38879 * 119.92827 * 0.02562 * 4 3 2 6 6 N 1.39924 * 120.07136 * 180.02562 * 5 4 3 7 7 C 1.46500 * 119.99995 * 8.92769 * 6 5 4 8 8 C 1.50705 * 109.47138 * 274.99132 * 7 6 5 9 9 H 1.07997 * 119.99887 * 4.98830 * 8 7 6 10 10 C 1.37875 * 119.99675 * 184.98156 * 8 7 6 11 11 N 1.31514 * 119.99911 * 184.97641 * 10 8 7 12 12 Si 1.86798 * 120.00271 * 4.98321 * 10 8 7 13 13 H 1.48507 * 109.47130 * 94.82254 * 12 10 8 14 14 H 1.48496 * 109.47063 * 214.82257 * 12 10 8 15 15 H 1.48498 * 109.47178 * 334.82658 * 12 10 8 16 16 C 1.34778 * 120.00020 * 188.93342 * 6 5 4 17 17 O 1.21281 * 119.99793 * 6.39031 * 16 6 5 18 18 C 1.50699 * 120.00075 * 186.40023 * 16 6 5 19 19 N 1.46504 * 115.55071 * 46.35898 * 18 16 6 20 20 C 1.34772 * 119.99817 * 40.83733 * 19 18 16 21 21 N 1.34777 * 119.99880 * 175.23543 * 20 19 18 22 22 O 1.21585 * 119.99965 * 354.96064 * 20 19 18 23 23 C 1.53004 * 117.51788 * 192.06398 * 18 16 6 24 24 C 1.52998 * 117.49347 * 260.69363 * 18 16 6 25 25 C 1.38872 * 119.85919 * 0.26795 * 5 4 3 26 26 C 1.38124 * 119.92448 * 359.43242 * 25 5 4 27 27 H 1.08994 * 109.47303 * 89.99462 * 1 2 3 28 28 H 1.09003 * 109.46964 * 209.99638 * 1 2 3 29 29 H 1.09001 * 109.46866 * 329.99354 * 1 2 3 30 30 H 1.08001 * 119.96148 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.04041 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47272 * 34.99426 * 7 6 5 33 33 H 1.09001 * 109.47265 * 154.99190 * 7 6 5 34 34 H 0.96993 * 120.00235 * 179.97438 * 11 10 8 35 35 H 0.96998 * 119.99752 * 220.83573 * 19 18 16 36 36 H 0.97000 * 119.99872 * 4.99916 * 21 20 19 37 37 H 0.96997 * 120.00274 * 185.01066 * 21 20 19 38 38 H 1.08994 * 117.49667 * 214.96618 * 23 18 16 39 39 H 1.08998 * 117.49615 * 359.97438 * 23 18 16 40 40 H 1.09002 * 117.50432 * 359.97438 * 24 18 16 41 41 H 1.09008 * 117.49797 * 144.99786 * 24 18 16 42 42 H 1.07996 * 120.03996 * 179.72564 * 25 5 4 43 43 H 1.08002 * 119.96331 * 180.29356 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2739 -0.0001 -0.0016 6 7 5.6731 -0.0001 -0.0016 7 6 6.4057 1.2531 0.1964 8 6 6.5498 1.9648 -1.1242 9 1 6.0686 1.5689 -2.0063 10 6 7.2958 3.1213 -1.2061 11 7 7.3419 3.7956 -2.3343 12 14 8.2414 3.7305 0.2853 13 1 9.6413 3.2394 0.2183 14 1 8.2380 5.2154 0.3008 15 1 7.5967 3.2210 1.5222 16 6 6.3470 -1.1530 -0.1839 17 8 5.7462 -2.1689 -0.4629 18 6 7.8470 -1.1798 -0.0408 19 7 8.3811 -0.5005 1.1422 20 6 7.7571 -0.6255 2.3302 21 7 8.2999 -0.0808 3.4371 22 8 6.7021 -1.2255 2.4025 23 6 8.5815 -2.4298 -0.5296 24 6 8.6799 -1.1253 -1.3231 25 6 3.5781 -1.2019 -0.0078 26 6 2.1969 -1.1984 -0.0010 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6552 2.1327 -0.0004 31 1 4.1164 2.1380 -0.0001 32 1 5.8583 1.8877 0.8934 33 1 7.3939 1.0361 0.6019 34 1 7.8664 4.6095 -2.3919 35 1 9.1839 0.0393 1.0704 36 1 9.1006 0.4623 3.3677 37 1 7.8899 -0.2319 4.3031 38 1 9.4621 -2.7467 0.0290 39 1 7.9798 -3.2333 -0.9544 40 1 8.1430 -1.0705 -2.2701 41 1 9.6254 -0.5840 -1.2865 42 1 4.1163 -2.1382 -0.0131 43 1 1.6551 -2.1327 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163420168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:19 Heat of formation + Delta-G solvation = -7.569170 kcal Electronic energy + Delta-G solvation = -28022.513442 eV Core-core repulsion = 24261.725155 eV Total energy + Delta-G solvation = -3760.788287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.27444 -40.73881 -39.57243 -37.80148 -37.11600 -34.94210 -34.68323 -33.25229 -32.68343 -31.82232 -29.98475 -27.73247 -25.26635 -24.60345 -23.62195 -23.20857 -22.99395 -21.83949 -20.32131 -19.39744 -19.15873 -18.69478 -18.22974 -17.58633 -16.70182 -16.57523 -16.32870 -16.04148 -15.91575 -15.48206 -15.25722 -15.13171 -14.88127 -14.55426 -14.52180 -14.39197 -13.99662 -13.60782 -13.42014 -12.98891 -12.91882 -12.65189 -12.57752 -12.48422 -12.24706 -12.06879 -11.99833 -11.84151 -11.68722 -11.43637 -10.81697 -10.77516 -10.70980 -10.50380 -9.81442 -9.78310 -8.58263 -8.31240 -6.38835 0.36287 0.53801 1.30462 1.37632 1.44337 1.48314 1.83995 1.99015 2.04227 2.32051 2.84355 2.99697 3.02077 3.28728 3.55738 3.67665 3.86142 4.02924 4.08605 4.24445 4.39862 4.47437 4.48599 4.59263 4.67882 4.73237 4.81631 4.91091 4.91655 4.94819 5.12995 5.16210 5.20227 5.28335 5.36446 5.48031 5.52116 5.72680 5.75986 5.80656 5.97647 6.12042 6.28634 6.54898 6.64295 6.97607 7.11028 7.25503 7.57958 8.85016 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.006614 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.671453 B = 4232.634129 C = 5448.302455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.164 4.164 5 C 0.137 3.863 6 N -0.524 5.524 7 C 0.209 3.791 8 C -0.535 4.535 9 H 0.021 0.979 10 C 0.025 3.975 11 N -0.936 5.936 12 Si 0.934 3.066 13 H -0.234 1.234 14 H -0.287 1.287 15 H -0.249 1.249 16 C 0.559 3.441 17 O -0.560 6.560 18 C 0.067 3.933 19 N -0.692 5.692 20 C 0.697 3.303 21 N -0.842 5.842 22 O -0.623 6.623 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.183 4.183 26 C -0.106 4.106 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.115 0.885 32 H 0.015 0.985 33 H 0.082 0.918 34 H 0.270 0.730 35 H 0.419 0.581 36 H 0.415 0.585 37 H 0.423 0.577 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.141 0.859 42 H 0.151 0.849 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 -5.942 10.133 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.184 4.184 5 C 0.042 3.958 6 N -0.242 5.242 7 C 0.087 3.913 8 C -0.573 4.573 9 H 0.040 0.960 10 C -0.174 4.174 11 N -0.575 5.575 12 Si 0.755 3.245 13 H -0.157 1.157 14 H -0.213 1.213 15 H -0.173 1.173 16 C 0.350 3.650 17 O -0.440 6.440 18 C -0.024 4.024 19 N -0.352 5.352 20 C 0.395 3.605 21 N -0.412 5.412 22 O -0.503 6.503 23 C -0.171 4.171 24 C -0.168 4.168 25 C -0.203 4.203 26 C -0.125 4.125 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.161 0.839 31 H 0.133 0.867 32 H 0.033 0.967 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.258 0.742 36 H 0.246 0.754 37 H 0.257 0.743 38 H 0.157 0.843 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.159 0.841 42 H 0.168 0.832 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.190 -6.821 9.835 12.167 hybrid contribution 0.852 1.363 0.288 1.632 sum 3.041 -5.458 10.123 11.896 Atomic orbital electron populations 1.20725 0.88310 1.03639 1.02892 1.20238 0.97971 0.92231 1.02018 1.21066 0.92288 0.99011 0.99877 1.21068 0.95602 0.96392 1.05372 1.18343 0.83093 0.95090 0.99311 1.45434 1.04114 1.09591 1.65011 1.20109 0.94100 0.80760 0.96293 1.21209 1.32637 1.09553 0.93937 0.96023 1.25740 0.96916 0.95522 0.99270 1.70061 1.41579 1.17307 1.28504 0.85925 0.80952 0.77998 0.79605 1.15700 1.21329 1.17290 1.19809 0.88967 0.81790 0.74458 1.90315 1.68673 1.34857 1.50191 1.20191 0.88246 1.04315 0.89691 1.44269 1.31546 1.54103 1.05259 1.16201 0.83069 0.79656 0.81543 1.42659 1.33891 1.56944 1.07732 1.91011 1.24030 1.49747 1.85520 1.23564 1.01700 0.90932 1.00865 1.23407 1.00937 1.00158 0.92253 1.22281 0.95719 0.98591 1.03662 1.21213 0.92732 0.98785 0.99758 0.90625 0.90458 0.90518 0.83854 0.86705 0.96671 0.90061 0.92106 0.74197 0.75398 0.74303 0.84316 0.88162 0.89126 0.84129 0.83218 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.27 10.01 71.24 0.71 -1.56 16 2 C -0.12 -4.13 5.88 -19.84 -0.12 -4.25 16 3 C -0.10 -3.86 9.69 22.25 0.22 -3.65 16 4 C -0.16 -7.45 9.02 22.39 0.20 -7.24 16 5 C 0.14 6.64 6.46 38.15 0.25 6.89 16 6 N -0.52 -25.31 2.39 -635.29 -1.52 -26.83 16 7 C 0.21 9.83 2.98 85.63 0.26 10.09 16 8 C -0.54 -29.18 9.26 25.60 0.24 -28.95 16 9 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 10 C 0.02 1.32 5.47 84.65 0.46 1.78 16 11 N -0.94 -54.28 13.96 21.45 0.30 -53.98 16 12 Si 0.93 37.23 27.42 68.60 1.88 39.11 16 13 H -0.23 -7.90 7.11 99.48 0.71 -7.19 16 14 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 15 H -0.25 -9.26 6.65 99.48 0.66 -8.60 16 16 C 0.56 25.64 5.07 87.66 0.44 26.08 16 17 O -0.56 -27.55 12.88 -3.03 -0.04 -27.59 16 18 C 0.07 2.36 1.96 2.86 0.01 2.36 16 19 N -0.69 -19.99 3.36 -441.45 -1.48 -21.47 16 20 C 0.70 22.00 7.65 179.06 1.37 23.37 16 21 N -0.84 -16.70 8.88 -184.75 -1.64 -18.34 16 22 O -0.62 -26.68 15.31 -3.98 -0.06 -26.74 16 23 C -0.13 -3.57 9.97 30.60 0.31 -3.27 16 24 C -0.13 -3.79 10.13 30.60 0.31 -3.48 16 25 C -0.18 -8.30 8.96 22.39 0.20 -8.10 16 26 C -0.11 -3.93 9.69 22.25 0.22 -3.71 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 29 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 30 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 31 H 0.11 5.57 6.15 -2.91 -0.02 5.56 16 32 H 0.02 0.75 6.55 -2.38 -0.02 0.74 16 33 H 0.08 3.35 3.16 -2.39 -0.01 3.35 16 34 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.42 8.87 8.77 -92.71 -0.81 8.06 16 36 H 0.41 5.09 8.85 -92.71 -0.82 4.27 16 37 H 0.42 7.33 8.93 -92.71 -0.83 6.51 16 38 H 0.14 2.73 8.14 -2.39 -0.02 2.72 16 39 H 0.10 2.98 7.72 -2.39 -0.02 2.97 16 40 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.14 3.16 8.14 -2.38 -0.02 3.14 16 42 H 0.15 7.33 4.78 -39.79 -0.19 7.14 16 43 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -81.45 353.39 0.91 -80.54 By element: Atomic # 1 Polarization: 50.54 SS G_CDS: -1.59 Total: 48.95 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.07 Total: 6.37 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -4.35 Total: -120.62 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -0.10 Total: -54.34 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 1.88 Total: 39.11 kcal Total: -81.45 0.91 -80.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163420168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.967 kcal (2) G-P(sol) polarization free energy of solvation -81.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds