Wall clock time and date at job start Tue Mar 31 2020 11:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38179 * 119.96359 * 2 1 4 4 C 1.38142 * 120.14152 * 179.97438 * 3 2 1 5 5 C 1.38952 * 120.07729 * 359.97438 * 4 3 2 6 6 N 1.39920 * 120.02950 * 180.02562 * 5 4 3 7 7 C 1.34783 * 120.00143 * 324.87666 * 6 5 4 8 8 O 1.21290 * 119.99799 * 4.62794 * 7 6 5 9 9 C 1.50695 * 120.00102 * 184.62182 * 7 6 5 10 10 C 1.53008 * 117.49671 * 248.62568 * 9 7 6 11 11 C 1.53005 * 117.49835 * 180.02562 * 9 7 6 12 12 C 1.38716 * 119.93357 * 0.02562 * 5 4 3 13 13 C 1.38797 * 119.86094 * 359.97438 * 12 5 4 14 14 N 1.39668 * 120.04372 * 180.02562 * 13 12 5 15 15 C 1.46500 * 119.99544 * 359.97438 * 14 13 12 16 16 C 1.50699 * 109.46930 * 180.02562 * 15 14 13 17 17 O 1.21287 * 120.00208 * 0.02562 * 16 15 14 18 18 N 1.34782 * 120.00251 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00293 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99844 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99839 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99739 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47307 * 60.00256 * 23 21 19 25 25 H 1.48501 * 109.46861 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47141 * 299.99910 * 23 21 19 27 27 H 1.09004 * 109.47017 * 270.02370 * 1 2 3 28 28 H 1.08995 * 109.47555 * 30.02419 * 1 2 3 29 29 H 1.09002 * 109.46948 * 150.02830 * 1 2 3 30 30 H 1.07998 * 119.92897 * 359.95526 * 3 2 1 31 31 H 1.07996 * 119.96062 * 179.97438 * 4 3 2 32 32 H 0.96996 * 120.00332 * 144.88829 * 6 5 4 33 33 H 1.08998 * 115.55164 * 34.32907 * 9 7 6 34 34 H 1.08997 * 117.50054 * 0.02562 * 10 9 7 35 35 H 1.09001 * 117.49798 * 145.02252 * 10 9 7 36 36 H 1.08993 * 117.49935 * 214.97878 * 11 9 7 37 37 H 1.08999 * 117.49660 * 359.97438 * 11 9 7 38 38 H 1.08006 * 120.06753 * 180.27829 * 12 5 4 39 39 H 0.97000 * 120.00139 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.47724 * 300.00061 * 15 14 13 41 41 H 1.08999 * 109.47196 * 60.00531 * 15 14 13 42 42 H 0.97006 * 119.99708 * 0.02562 * 18 16 15 43 43 H 0.97004 * 119.99396 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1971 0.0000 4 6 3.5786 1.2014 0.0005 5 6 4.2787 0.0011 0.0016 6 7 5.6779 0.0066 0.0027 7 6 6.3486 0.9637 -0.6688 8 8 5.7419 1.8676 -1.2037 9 6 7.8521 0.9108 -0.7548 10 6 8.6409 1.9856 -0.0039 11 6 8.5550 2.0266 -1.5306 12 6 3.5891 -1.2025 0.0016 13 6 2.2011 -1.2037 0.0011 14 7 1.5029 -2.4133 0.0016 15 6 2.2356 -3.6819 0.0022 16 6 1.2565 -4.8275 0.0021 17 8 0.0640 -4.6061 0.0011 18 7 1.7059 -6.0982 0.0030 19 6 0.8152 -7.1404 0.0035 20 1 -0.2467 -6.9432 0.0026 21 6 1.2786 -8.4503 0.0039 22 7 2.5706 -8.6902 0.0045 23 14 0.0649 -9.8703 0.0038 24 1 -0.7883 -9.7921 -1.2090 25 1 0.8076 -11.1562 0.0050 26 1 -0.7893 -9.7915 1.2159 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5134 30 1 1.6554 2.1314 -0.0007 31 1 4.1150 2.1387 0.0001 32 1 6.1652 -0.6784 0.4865 33 1 8.2852 -0.0881 -0.8061 34 1 8.0723 2.7306 0.5526 35 1 9.5932 1.6938 0.4389 36 1 9.4507 1.7619 -2.0924 37 1 7.9298 2.7987 -1.9791 38 1 4.1311 -2.1367 0.0070 39 1 0.5329 -2.4134 0.0009 40 1 2.8623 -3.7400 -0.8877 41 1 2.8622 -3.7392 0.8922 42 1 2.6597 -6.2753 0.0042 43 1 2.8941 -9.6047 0.0052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176911169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:24 Heat of formation + Delta-G solvation = -20.662712 kcal Electronic energy + Delta-G solvation = -25145.887213 eV Core-core repulsion = 21384.531147 eV Total energy + Delta-G solvation = -3761.356066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73400 -39.33621 -38.29133 -36.70843 -35.44877 -34.50361 -33.88796 -31.60343 -31.38114 -29.65231 -27.23932 -26.48459 -24.58685 -24.21348 -22.81704 -21.97505 -21.29604 -20.00063 -19.43273 -18.26665 -17.94060 -17.67504 -16.20023 -15.86338 -15.56498 -15.21683 -15.09673 -14.83519 -14.63780 -14.53642 -14.15905 -13.94604 -13.63651 -13.42323 -13.31556 -12.91387 -12.49551 -12.36617 -12.15375 -11.93991 -11.89042 -11.65669 -11.40976 -11.14995 -11.04902 -11.00292 -10.91629 -10.53336 -10.41828 -10.33805 -9.96695 -9.66082 -9.52607 -8.65489 -8.15484 -8.13358 -7.06724 -6.55119 -3.96861 1.37514 1.81602 2.29967 2.83662 3.11435 3.19137 3.22804 3.47426 3.67818 3.70498 4.00560 4.10663 4.31264 4.40826 4.49654 4.76715 4.83744 5.00222 5.13040 5.18756 5.20871 5.35675 5.38545 5.52234 5.54963 5.61851 5.64528 5.75130 5.79902 5.81618 5.87045 5.89237 6.06887 6.12012 6.35185 6.46728 6.56127 6.76659 7.05690 7.29451 7.42725 7.54879 7.89919 7.96600 8.10307 8.42332 9.01709 9.35598 9.84083 10.61852 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002513 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.958668 B =11139.205192 C =12768.986888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.176 4.176 3 C -0.057 4.057 4 C -0.182 4.182 5 C 0.181 3.819 6 N -0.667 5.667 7 C 0.542 3.458 8 O -0.520 6.520 9 C -0.196 4.196 10 C -0.152 4.152 11 C -0.146 4.146 12 C -0.225 4.225 13 C 0.245 3.755 14 N -0.722 5.722 15 C 0.112 3.888 16 C 0.429 3.571 17 O -0.594 6.594 18 N -0.551 5.551 19 C -0.305 4.305 20 H 0.104 0.896 21 C 0.026 3.974 22 N -0.897 5.897 23 Si 0.934 3.066 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.410 0.590 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.125 0.875 39 H 0.412 0.588 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.395 0.605 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.842 17.971 1.042 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.181 4.181 3 C -0.077 4.077 4 C -0.204 4.204 5 C 0.086 3.914 6 N -0.311 5.311 7 C 0.330 3.670 8 O -0.395 6.395 9 C -0.218 4.218 10 C -0.190 4.190 11 C -0.183 4.183 12 C -0.251 4.251 13 C 0.138 3.862 14 N -0.354 5.354 15 C -0.016 4.016 16 C 0.215 3.785 17 O -0.480 6.480 18 N -0.186 5.186 19 C -0.434 4.434 20 H 0.122 0.878 21 C -0.177 4.177 22 N -0.537 5.537 23 Si 0.760 3.240 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.198 1.198 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.246 0.754 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.143 0.857 39 H 0.253 0.747 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.228 0.772 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.867 18.347 0.632 21.333 hybrid contribution 0.090 -1.539 0.226 1.558 sum 10.957 16.808 0.857 20.082 Atomic orbital electron populations 1.20581 0.91370 1.02348 1.01883 1.19365 0.95888 0.91555 1.11325 1.20604 0.93356 0.96597 0.97109 1.20861 0.93878 0.97139 1.08543 1.17355 0.81473 0.93647 0.98877 1.43390 1.05202 1.31070 1.51466 1.19773 0.88515 0.81362 0.77362 1.90707 1.69383 1.33992 1.45385 1.22194 0.91110 0.98000 1.10456 1.22964 1.01079 0.99454 0.95476 1.22965 1.01729 0.99399 0.94250 1.20254 0.92517 0.96889 1.15431 1.17321 0.90422 0.85740 0.92709 1.44584 1.09423 1.01240 1.80176 1.20938 0.94732 0.84133 1.01819 1.19742 0.89208 0.84089 0.85484 1.90502 1.16540 1.84040 1.56967 1.41792 1.09877 1.03975 1.62931 1.19680 0.91419 0.84059 1.48262 0.87772 1.25311 0.96707 0.98883 0.96781 1.69600 1.12546 1.22071 1.49485 0.85873 0.79637 0.79284 0.79201 1.19758 1.20834 1.19762 0.91755 0.91810 0.91884 0.86125 0.85204 0.75393 0.85501 0.88146 0.87619 0.87757 0.87290 0.85737 0.74728 0.90771 0.90723 0.77165 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.57 36.01 0.34 -0.97 16 2 C -0.18 -2.51 5.90 -104.38 -0.62 -3.13 16 3 C -0.06 -0.77 9.69 -39.64 -0.38 -1.15 16 4 C -0.18 -2.56 8.69 -39.35 -0.34 -2.90 16 5 C 0.18 2.43 6.29 -83.72 -0.53 1.91 16 6 N -0.67 -7.07 5.33 -9.88 -0.05 -7.13 16 7 C 0.54 6.09 7.46 -10.99 -0.08 6.01 16 8 O -0.52 -7.66 13.69 5.55 0.08 -7.59 16 9 C -0.20 -1.49 6.19 -91.77 -0.57 -2.05 16 10 C -0.15 -0.93 10.23 -26.75 -0.27 -1.21 16 11 C -0.15 -1.02 10.04 -26.75 -0.27 -1.29 16 12 C -0.23 -3.17 9.23 -39.20 -0.36 -3.53 16 13 C 0.24 3.77 6.63 -83.82 -0.56 3.21 16 14 N -0.72 -12.16 5.60 -59.83 -0.34 -12.50 16 15 C 0.11 1.94 5.39 -5.19 -0.03 1.92 16 16 C 0.43 9.75 7.85 -10.98 -0.09 9.66 16 17 O -0.59 -15.43 15.24 5.55 0.08 -15.35 16 18 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -23.55 13.05 55.50 0.72 -22.83 16 23 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.06 0.85 6.54 -51.93 -0.34 0.51 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.87 6.22 -52.49 -0.33 1.55 16 32 H 0.41 3.07 8.82 -40.82 -0.36 2.71 16 33 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.93 7.67 -51.93 -0.40 0.54 16 38 H 0.12 1.58 6.73 -52.48 -0.35 1.23 16 39 H 0.41 7.39 5.42 -40.82 -0.22 7.17 16 40 H 0.07 1.18 7.95 -51.93 -0.41 0.77 16 41 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 42 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 43 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -32.08 364.94 -8.69 -40.77 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -5.61 Total: 18.51 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.99 Total: -1.33 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.28 Total: -55.92 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.16 Total: -22.94 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.08 -8.69 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176911169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.103 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds