Wall clock time and date at job start Tue Mar 31 2020 11:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38179 * 119.96359 * 2 1 4 4 C 1.38142 * 120.14152 * 179.97438 * 3 2 1 5 5 C 1.38952 * 120.07729 * 359.97438 * 4 3 2 6 6 N 1.39920 * 120.02950 * 180.02562 * 5 4 3 7 7 C 1.34783 * 120.00143 * 324.87666 * 6 5 4 8 8 O 1.21290 * 119.99799 * 4.62794 * 7 6 5 9 9 C 1.50695 * 120.00102 * 184.62182 * 7 6 5 10 10 C 1.53008 * 117.49671 * 248.62568 * 9 7 6 11 11 C 1.53005 * 117.49835 * 180.02562 * 9 7 6 12 12 C 1.38716 * 119.93357 * 0.02562 * 5 4 3 13 13 C 1.38797 * 119.86094 * 359.97438 * 12 5 4 14 14 N 1.39668 * 120.04372 * 180.02562 * 13 12 5 15 15 C 1.46500 * 119.99544 * 359.97438 * 14 13 12 16 16 C 1.50699 * 109.46930 * 180.02562 * 15 14 13 17 17 O 1.21287 * 120.00208 * 0.02562 * 16 15 14 18 18 N 1.34782 * 120.00251 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00293 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99844 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99839 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99739 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47307 * 60.00256 * 23 21 19 25 25 H 1.48501 * 109.46861 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47141 * 299.99910 * 23 21 19 27 27 H 1.09004 * 109.47017 * 270.02370 * 1 2 3 28 28 H 1.08995 * 109.47555 * 30.02419 * 1 2 3 29 29 H 1.09002 * 109.46948 * 150.02830 * 1 2 3 30 30 H 1.07998 * 119.92897 * 359.95526 * 3 2 1 31 31 H 1.07996 * 119.96062 * 179.97438 * 4 3 2 32 32 H 0.96996 * 120.00332 * 144.88829 * 6 5 4 33 33 H 1.08998 * 115.55164 * 34.32907 * 9 7 6 34 34 H 1.08997 * 117.50054 * 0.02562 * 10 9 7 35 35 H 1.09001 * 117.49798 * 145.02252 * 10 9 7 36 36 H 1.08993 * 117.49935 * 214.97878 * 11 9 7 37 37 H 1.08999 * 117.49660 * 359.97438 * 11 9 7 38 38 H 1.08006 * 120.06753 * 180.27829 * 12 5 4 39 39 H 0.97000 * 120.00139 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.47724 * 300.00061 * 15 14 13 41 41 H 1.08999 * 109.47196 * 60.00531 * 15 14 13 42 42 H 0.97006 * 119.99708 * 0.02562 * 18 16 15 43 43 H 0.97004 * 119.99396 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1971 0.0000 4 6 3.5786 1.2014 0.0005 5 6 4.2787 0.0011 0.0016 6 7 5.6779 0.0066 0.0027 7 6 6.3486 0.9637 -0.6688 8 8 5.7419 1.8676 -1.2037 9 6 7.8521 0.9108 -0.7548 10 6 8.6409 1.9856 -0.0039 11 6 8.5550 2.0266 -1.5306 12 6 3.5891 -1.2025 0.0016 13 6 2.2011 -1.2037 0.0011 14 7 1.5029 -2.4133 0.0016 15 6 2.2356 -3.6819 0.0022 16 6 1.2565 -4.8275 0.0021 17 8 0.0640 -4.6061 0.0011 18 7 1.7059 -6.0982 0.0030 19 6 0.8152 -7.1404 0.0035 20 1 -0.2467 -6.9432 0.0026 21 6 1.2786 -8.4503 0.0039 22 7 2.5706 -8.6902 0.0045 23 14 0.0649 -9.8703 0.0038 24 1 -0.7883 -9.7921 -1.2090 25 1 0.8076 -11.1562 0.0050 26 1 -0.7893 -9.7915 1.2159 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5134 30 1 1.6554 2.1314 -0.0007 31 1 4.1150 2.1387 0.0001 32 1 6.1652 -0.6784 0.4865 33 1 8.2852 -0.0881 -0.8061 34 1 8.0723 2.7306 0.5526 35 1 9.5932 1.6938 0.4389 36 1 9.4507 1.7619 -2.0924 37 1 7.9298 2.7987 -1.9791 38 1 4.1311 -2.1367 0.0070 39 1 0.5329 -2.4134 0.0009 40 1 2.8623 -3.7400 -0.8877 41 1 2.8622 -3.7392 0.8922 42 1 2.6597 -6.2753 0.0042 43 1 2.8941 -9.6047 0.0052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176911169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:24 Heat of formation + Delta-G solvation = -41.907846 kcal Electronic energy + Delta-G solvation = -25146.808471 eV Core-core repulsion = 21384.531147 eV Total energy + Delta-G solvation = -3762.277324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67212 -40.59755 -39.85078 -37.46135 -36.54643 -36.05337 -35.37513 -33.38313 -32.56796 -30.90443 -28.56548 -27.61545 -26.27968 -25.10248 -23.32322 -23.14364 -22.29436 -21.19102 -20.85338 -20.03396 -19.18736 -18.51784 -17.60412 -17.23968 -16.57594 -16.48840 -16.37260 -16.11694 -15.98864 -15.75799 -15.37141 -15.18630 -14.84098 -14.69821 -14.48688 -13.94145 -13.84318 -13.60603 -13.53098 -13.29241 -13.01315 -12.89918 -12.49552 -12.48367 -12.40354 -12.15570 -12.08650 -11.59179 -11.54974 -11.49361 -11.46802 -10.91795 -10.60577 -10.54553 -10.10166 -9.19403 -8.52239 -8.24985 -6.01747 0.33232 0.69965 1.36933 1.41558 1.45479 1.51821 1.91807 1.99238 2.21684 2.45568 2.87060 2.96317 3.15266 3.16884 3.64000 3.84479 3.96595 3.98876 4.14498 4.18537 4.22384 4.31963 4.40521 4.46424 4.47965 4.62900 4.73224 4.76476 4.83433 4.84766 4.92092 5.04658 5.12876 5.23887 5.28782 5.36843 5.46440 5.50740 5.67219 5.87342 5.99746 6.36237 6.45488 6.50930 6.77283 7.03896 7.12576 7.44473 7.96725 8.64366 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002513 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.958668 B =11139.205192 C =12768.986888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.185 4.185 3 C -0.058 4.058 4 C -0.192 4.192 5 C 0.177 3.823 6 N -0.658 5.658 7 C 0.536 3.464 8 O -0.561 6.561 9 C -0.201 4.201 10 C -0.138 4.138 11 C -0.152 4.152 12 C -0.227 4.227 13 C 0.226 3.774 14 N -0.731 5.731 15 C 0.127 3.873 16 C 0.429 3.571 17 O -0.630 6.630 18 N -0.559 5.559 19 C -0.339 4.339 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.914 5.914 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.271 1.271 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.142 0.858 31 H 0.124 0.876 32 H 0.426 0.574 33 H 0.154 0.846 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.405 0.595 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.400 0.600 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.559 17.913 1.354 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.190 4.190 3 C -0.077 4.077 4 C -0.214 4.214 5 C 0.082 3.918 6 N -0.303 5.303 7 C 0.326 3.674 8 O -0.439 6.439 9 C -0.222 4.222 10 C -0.175 4.175 11 C -0.190 4.190 12 C -0.252 4.252 13 C 0.121 3.879 14 N -0.364 5.364 15 C -0.001 4.001 16 C 0.217 3.783 17 O -0.518 6.518 18 N -0.195 5.195 19 C -0.468 4.468 20 H 0.099 0.901 21 C -0.209 4.209 22 N -0.554 5.554 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.196 1.196 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.160 0.840 31 H 0.142 0.858 32 H 0.265 0.735 33 H 0.172 0.828 34 H 0.108 0.892 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.104 0.896 38 H 0.157 0.843 39 H 0.244 0.756 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.235 0.765 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.646 18.291 0.961 22.258 hybrid contribution -0.415 -1.388 0.125 1.454 sum 12.231 16.903 1.086 20.892 Atomic orbital electron populations 1.20586 0.90452 1.02572 1.02329 1.19598 0.96758 0.91500 1.11152 1.20841 0.93276 0.97252 0.96312 1.20988 0.94373 0.97267 1.08750 1.17461 0.82891 0.93273 0.98216 1.43379 1.04182 1.31453 1.51302 1.20491 0.90085 0.80492 0.76334 1.90687 1.70563 1.35597 1.47099 1.22269 0.88454 0.99770 1.11664 1.23069 1.01579 0.98098 0.94783 1.23034 1.02085 0.98634 0.95217 1.20394 0.92147 0.97653 1.15039 1.17534 0.91055 0.85450 0.93822 1.44538 1.09028 1.01441 1.81373 1.20834 0.93318 0.82166 1.03771 1.20646 0.89643 0.84788 0.83254 1.90476 1.18644 1.84752 1.57939 1.41820 1.09803 1.04236 1.63647 1.19649 0.91010 0.85600 1.50534 0.90062 1.26056 0.98446 1.00566 0.95823 1.69653 1.13565 1.22905 1.49286 0.84982 0.77673 0.76681 0.78997 1.19718 1.19392 1.19633 0.91186 0.89964 0.93216 0.84010 0.85825 0.73523 0.82802 0.89214 0.84834 0.85493 0.89553 0.84348 0.75587 0.88883 0.88377 0.76541 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.57 71.24 0.68 -1.83 16 2 C -0.18 -5.14 5.90 -19.71 -0.12 -5.25 16 3 C -0.06 -1.49 9.69 22.23 0.22 -1.27 16 4 C -0.19 -5.29 8.69 22.42 0.19 -5.09 16 5 C 0.18 4.57 6.29 38.14 0.24 4.81 16 6 N -0.66 -12.97 5.33 -303.56 -1.62 -14.59 16 7 C 0.54 11.51 7.46 87.65 0.65 12.16 16 8 O -0.56 -16.62 13.69 -3.06 -0.04 -16.66 16 9 C -0.20 -2.60 6.19 -11.54 -0.07 -2.67 16 10 C -0.14 -1.37 10.23 30.59 0.31 -1.05 16 11 C -0.15 -1.88 10.04 30.58 0.31 -1.58 16 12 C -0.23 -6.07 9.23 22.52 0.21 -5.86 16 13 C 0.23 6.78 6.63 38.20 0.25 7.03 16 14 N -0.73 -24.29 5.60 -343.21 -1.92 -26.22 16 15 C 0.13 4.27 5.39 85.63 0.46 4.73 16 16 C 0.43 19.62 7.85 87.66 0.69 20.30 16 17 O -0.63 -33.44 15.24 -3.05 -0.05 -33.49 16 18 N -0.56 -27.47 5.29 -306.98 -1.62 -29.09 16 19 C -0.34 -18.57 9.68 84.04 0.81 -17.75 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.41 5.50 84.93 0.47 0.05 16 22 N -0.91 -47.45 13.05 21.66 0.28 -47.17 16 23 Si 0.99 41.51 29.55 68.60 2.03 43.54 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 29 H 0.05 1.35 6.54 -2.39 -0.02 1.33 16 30 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.12 3.58 6.22 -2.91 -0.02 3.56 16 32 H 0.43 5.44 8.82 -92.71 -0.82 4.62 16 33 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.48 7.67 -2.39 -0.02 1.46 16 38 H 0.14 3.21 6.73 -2.91 -0.02 3.19 16 39 H 0.41 14.69 5.42 -92.71 -0.50 14.19 16 40 H 0.09 2.80 7.95 -2.39 -0.02 2.78 16 41 H 0.10 2.85 7.94 -2.39 -0.02 2.83 16 42 H 0.40 18.42 7.90 -92.70 -0.73 17.69 16 43 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -70.19 364.94 1.39 -68.80 By element: Atomic # 1 Polarization: 49.13 SS G_CDS: -0.97 Total: 48.16 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.31 Total: 6.73 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -4.88 Total: -117.07 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.09 Total: -50.15 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -70.19 1.39 -68.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176911169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.888 kcal (2) G-P(sol) polarization free energy of solvation -70.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds