Wall clock time and date at job start Tue Mar 31 2020 11:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99888 * 2 1 4 4 C 1.38217 * 120.00253 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99475 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99797 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47072 * 200.00093 * 6 5 4 8 8 C 1.52995 * 109.47204 * 79.99944 * 6 5 4 9 9 N 1.46898 * 109.46844 * 320.00095 * 6 5 4 10 10 C 1.46901 * 110.99801 * 204.99879 * 9 6 5 11 11 C 1.53001 * 109.47368 * 180.02562 * 10 9 6 12 12 H 1.09002 * 109.47232 * 54.99446 * 11 10 9 13 13 C 1.47197 * 109.46972 * 295.00007 * 11 10 9 14 14 N 7.01187 * 136.32501 * 293.88474 * 2 1 3 15 15 C 1.52999 * 109.47576 * 175.00130 * 11 10 9 16 16 C 1.50697 * 109.47093 * 184.99929 * 15 11 10 17 17 H 1.07992 * 120.00521 * 359.97438 * 16 15 11 18 18 C 1.37882 * 119.99620 * 179.97438 * 16 15 11 19 19 N 1.31513 * 119.99716 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00226 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46963 * 89.99737 * 20 18 16 22 22 H 1.48497 * 109.47251 * 209.99766 * 20 18 16 23 23 H 1.48499 * 109.47231 * 330.00405 * 20 18 16 24 24 C 1.38210 * 120.00463 * 0.02562 * 5 4 3 25 25 C 1.38216 * 120.00324 * 179.72231 * 2 1 3 26 26 N 1.48021 * 119.99779 * 0.02562 * 25 2 1 27 27 O 1.21792 * 119.99961 * 186.18575 * 26 25 2 28 28 O 1.21804 * 120.00141 * 6.17221 * 26 25 2 29 29 H 1.08994 * 109.46915 * 96.92033 * 1 2 3 30 30 H 1.09000 * 109.47026 * 336.91466 * 1 2 3 31 31 H 1.09002 * 109.46666 * 216.91665 * 1 2 3 32 32 H 1.08000 * 120.00112 * 359.97438 * 3 2 1 33 33 H 1.07994 * 119.99894 * 180.02562 * 4 3 2 34 34 H 1.09008 * 109.46854 * 60.00042 * 8 6 5 35 35 H 1.08996 * 109.47658 * 179.97438 * 8 6 5 36 36 H 1.08999 * 109.47167 * 300.00604 * 8 6 5 37 37 H 1.00900 * 111.00210 * 328.95096 * 9 6 5 38 38 H 1.09002 * 109.47085 * 300.00087 * 10 9 6 39 39 H 1.09001 * 109.47224 * 59.99957 * 10 9 6 40 40 H 1.09001 * 109.46746 * 305.00213 * 15 11 10 41 41 H 1.08997 * 109.46887 * 64.99340 * 15 11 10 42 42 H 0.97002 * 120.00076 * 180.02562 * 19 18 16 43 43 H 1.08003 * 120.00068 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1424 -0.9657 -0.3480 8 6 6.2877 0.2512 1.4236 9 7 6.2690 1.0607 -0.8876 10 6 7.6168 0.7508 -1.3831 11 6 8.0927 1.8758 -2.3043 12 1 8.0318 2.8277 -1.7768 13 6 7.2387 1.9233 -3.5023 14 7 6.5785 1.9606 -4.4275 15 6 9.5416 1.6154 -2.7210 16 6 10.0501 2.7828 -3.5270 17 1 9.4043 3.6259 -3.7230 18 6 11.3399 2.7744 -4.0144 19 7 11.7838 3.7934 -4.7174 20 14 12.4572 1.3164 -3.6749 21 1 12.3054 0.3134 -4.7595 22 1 13.8681 1.7762 -3.6199 23 1 12.0862 0.7003 -2.3757 24 6 3.5807 -1.1969 0.0016 25 6 2.1982 -1.1969 0.0058 26 7 1.4581 -2.4788 0.0114 27 8 2.0617 -3.5300 0.1302 28 8 0.2454 -2.4825 -0.1024 29 1 -0.3633 -0.1238 -1.0201 30 1 -0.3633 0.9454 0.4030 31 1 -0.3633 -0.8217 0.6173 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.9238 -0.5358 2.0842 35 1 7.3776 0.2508 1.4246 36 1 5.9240 1.2170 1.7744 37 1 5.6293 1.2153 -1.6523 38 1 8.3014 0.6579 -0.5400 39 1 7.5933 -0.1876 -1.9372 40 1 10.1589 1.4918 -1.8311 41 1 9.5888 0.7090 -3.3245 42 1 12.6910 3.7873 -5.0606 43 1 4.1208 -2.1322 0.0029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178685120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:18 Heat of formation + Delta-G solvation = 37.816819 kcal Electronic energy + Delta-G solvation = -25393.781276 eV Core-core repulsion = 21634.961073 eV Total energy + Delta-G solvation = -3758.820203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.51818 -40.30298 -37.94254 -36.93754 -36.13426 -34.17703 -33.09355 -32.29678 -31.84219 -30.01877 -27.96685 -27.00025 -26.12422 -23.62024 -23.20889 -22.45112 -21.67476 -21.04530 -18.95510 -18.59511 -17.84962 -17.09409 -17.00941 -16.55510 -16.35162 -15.77084 -14.95174 -14.93312 -14.46929 -14.18495 -14.04730 -13.52019 -13.37577 -13.13441 -12.98114 -12.88618 -12.63037 -12.52512 -12.41174 -12.26906 -12.04738 -11.95306 -11.65869 -11.53814 -11.42570 -11.36700 -11.14954 -10.95266 -10.91710 -10.40396 -10.08296 -9.96321 -9.87780 -9.41896 -9.34849 -8.71312 -8.67401 -6.16891 -4.18172 -0.43416 0.49008 1.05691 1.13614 2.84248 3.21779 3.28887 3.30193 3.39960 3.43967 3.73317 3.92899 3.99224 4.23684 4.32280 4.46007 4.53428 4.56493 4.66163 4.95319 4.96964 5.02745 5.13978 5.16074 5.17609 5.26333 5.31772 5.44394 5.49427 5.58558 5.61526 5.67778 5.74339 5.83878 5.89150 6.01753 6.06747 6.23533 6.25309 6.75191 6.85844 7.02234 7.09488 7.40201 7.56177 8.22379 8.34884 8.86081 9.42607 10.96125 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.002479 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.853080 B =11291.315137 C =11582.455379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.017 4.017 3 C -0.124 4.124 4 C -0.042 4.042 5 C -0.093 4.093 6 C 0.124 3.876 7 H 0.061 0.939 8 C -0.137 4.137 9 N -0.684 5.684 10 C 0.063 3.937 11 C 0.018 3.982 12 H 0.118 0.882 13 C 0.235 3.765 14 N -0.466 5.466 15 C -0.004 4.004 16 C -0.530 4.530 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.262 1.262 24 C -0.046 4.046 25 C -0.050 4.050 26 N 0.034 4.966 27 O -0.169 6.169 28 O -0.161 6.161 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.342 0.658 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.019 0.981 42 H 0.265 0.735 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.094 -7.868 15.812 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.019 4.019 3 C -0.142 4.142 4 C -0.060 4.060 5 C -0.094 4.094 6 C 0.014 3.986 7 H 0.079 0.921 8 C -0.195 4.195 9 N -0.316 5.316 10 C -0.066 4.066 11 C -0.004 4.004 12 H 0.136 0.864 13 C -0.082 4.082 14 N -0.143 5.143 15 C -0.043 4.043 16 C -0.568 4.568 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.066 4.066 25 C -0.134 4.134 26 N 0.550 4.450 27 O -0.382 6.382 28 O -0.375 6.375 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.161 0.839 38 H 0.114 0.886 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.350 -6.749 14.831 24.540 hybrid contribution 0.695 -1.667 -0.412 1.852 sum -17.655 -8.416 14.418 24.298 Atomic orbital electron populations 1.21316 0.88577 1.04464 1.04611 1.19937 0.98073 0.90580 0.93297 1.21220 0.94274 0.97139 1.01577 1.21645 0.93848 0.99330 0.91189 1.20006 0.96535 0.91806 1.01080 1.20480 0.87682 0.94630 0.95805 0.92134 1.21815 1.01979 1.02199 0.93468 1.60739 1.04526 1.43239 1.23119 1.22203 0.89705 0.96516 0.98204 1.19068 0.94039 1.00776 0.86498 0.86447 1.29237 0.92209 0.92275 0.94453 1.81122 1.12748 1.09558 1.10858 1.19634 0.88540 0.98317 0.97799 1.21007 0.98696 1.03739 1.33312 0.90791 1.24997 0.97926 0.95850 0.94336 1.69901 1.17474 1.30503 1.35496 0.86814 0.80188 0.83088 0.79417 1.20303 1.21198 1.18684 1.20905 0.90898 1.00351 0.94419 1.20879 0.92307 0.83188 1.17016 1.43578 1.01090 1.02805 0.97526 1.94549 1.70082 1.20125 1.53480 1.94463 0.96303 1.93752 1.52996 0.89344 0.90746 0.88426 0.83434 0.82799 0.92517 0.91308 0.91493 0.83934 0.88645 0.94328 0.94215 0.96276 0.92499 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 8.70 36.01 0.31 -0.60 16 2 C -0.02 -0.15 5.88 -104.62 -0.62 -0.76 16 3 C -0.12 -0.86 9.67 -39.58 -0.38 -1.24 16 4 C -0.04 -0.31 9.01 -39.58 -0.36 -0.67 16 5 C -0.09 -0.77 4.71 -104.62 -0.49 -1.27 16 6 C 0.12 1.04 2.82 -68.87 -0.19 0.84 16 7 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 8 C -0.14 -1.02 9.39 37.16 0.35 -0.67 16 9 N -0.68 -6.92 5.69 -107.95 -0.61 -7.53 16 10 C 0.06 0.75 4.92 -3.82 -0.02 0.73 16 11 C 0.02 0.29 2.42 -93.41 -0.23 0.06 16 12 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 13 C 0.24 4.39 12.98 -20.72 -0.27 4.12 16 14 N -0.47 -9.67 18.55 42.20 0.78 -8.89 16 15 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 16 C -0.53 -13.79 9.15 -34.44 -0.32 -14.10 16 17 H 0.07 2.12 7.84 -52.49 -0.41 1.71 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 20 Si 0.88 20.11 27.47 -169.99 -4.67 15.44 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 24 C -0.05 -0.42 9.18 -39.59 -0.36 -0.79 16 25 C -0.05 -0.51 6.83 -79.95 -0.55 -1.06 16 26 N 0.03 0.41 4.45 33.96 0.15 0.56 16 27 O -0.17 -2.20 18.47 -29.46 -0.54 -2.74 16 28 O -0.16 -1.94 15.35 -29.46 -0.45 -2.39 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.35 8.04 -51.93 -0.42 -0.07 16 31 H 0.10 0.76 5.84 -51.93 -0.30 0.46 16 32 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.15 1.03 7.72 -52.49 -0.41 0.62 16 34 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 35 H 0.07 0.52 7.45 -51.93 -0.39 0.13 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.34 3.76 7.06 -39.29 -0.28 3.48 16 38 H 0.10 1.00 7.44 -51.93 -0.39 0.61 16 39 H 0.04 0.46 8.05 -51.93 -0.42 0.04 16 40 H 0.04 0.75 7.20 -51.93 -0.37 0.38 16 41 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.15 1.27 7.60 -52.48 -0.40 0.87 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -31.37 367.72 -8.19 -39.57 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.85 Total: -0.09 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.31 Total: -13.71 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 1.09 Total: -41.62 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -1.00 Total: -5.13 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.37 -8.19 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178685120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.383 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds