Wall clock time and date at job start Tue Mar 31 2020 11:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99888 * 2 1 4 4 C 1.38217 * 120.00253 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99475 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99797 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47072 * 200.00093 * 6 5 4 8 8 C 1.52995 * 109.47204 * 79.99944 * 6 5 4 9 9 N 1.46898 * 109.46844 * 320.00095 * 6 5 4 10 10 C 1.46901 * 110.99801 * 204.99879 * 9 6 5 11 11 C 1.53001 * 109.47368 * 180.02562 * 10 9 6 12 12 H 1.09002 * 109.47232 * 54.99446 * 11 10 9 13 13 C 1.47197 * 109.46972 * 295.00007 * 11 10 9 14 14 N 7.01187 * 136.32501 * 293.88474 * 2 1 3 15 15 C 1.52999 * 109.47576 * 175.00130 * 11 10 9 16 16 C 1.50697 * 109.47093 * 184.99929 * 15 11 10 17 17 H 1.07992 * 120.00521 * 359.97438 * 16 15 11 18 18 C 1.37882 * 119.99620 * 179.97438 * 16 15 11 19 19 N 1.31513 * 119.99716 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00226 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46963 * 89.99737 * 20 18 16 22 22 H 1.48497 * 109.47251 * 209.99766 * 20 18 16 23 23 H 1.48499 * 109.47231 * 330.00405 * 20 18 16 24 24 C 1.38210 * 120.00463 * 0.02562 * 5 4 3 25 25 C 1.38216 * 120.00324 * 179.72231 * 2 1 3 26 26 N 1.48021 * 119.99779 * 0.02562 * 25 2 1 27 27 O 1.21792 * 119.99961 * 186.18575 * 26 25 2 28 28 O 1.21804 * 120.00141 * 6.17221 * 26 25 2 29 29 H 1.08994 * 109.46915 * 96.92033 * 1 2 3 30 30 H 1.09000 * 109.47026 * 336.91466 * 1 2 3 31 31 H 1.09002 * 109.46666 * 216.91665 * 1 2 3 32 32 H 1.08000 * 120.00112 * 359.97438 * 3 2 1 33 33 H 1.07994 * 119.99894 * 180.02562 * 4 3 2 34 34 H 1.09008 * 109.46854 * 60.00042 * 8 6 5 35 35 H 1.08996 * 109.47658 * 179.97438 * 8 6 5 36 36 H 1.08999 * 109.47167 * 300.00604 * 8 6 5 37 37 H 1.00900 * 111.00210 * 328.95096 * 9 6 5 38 38 H 1.09002 * 109.47085 * 300.00087 * 10 9 6 39 39 H 1.09001 * 109.47224 * 59.99957 * 10 9 6 40 40 H 1.09001 * 109.46746 * 305.00213 * 15 11 10 41 41 H 1.08997 * 109.46887 * 64.99340 * 15 11 10 42 42 H 0.97002 * 120.00076 * 180.02562 * 19 18 16 43 43 H 1.08003 * 120.00068 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1424 -0.9657 -0.3480 8 6 6.2877 0.2512 1.4236 9 7 6.2690 1.0607 -0.8876 10 6 7.6168 0.7508 -1.3831 11 6 8.0927 1.8758 -2.3043 12 1 8.0318 2.8277 -1.7768 13 6 7.2387 1.9233 -3.5023 14 7 6.5785 1.9606 -4.4275 15 6 9.5416 1.6154 -2.7210 16 6 10.0501 2.7828 -3.5270 17 1 9.4043 3.6259 -3.7230 18 6 11.3399 2.7744 -4.0144 19 7 11.7838 3.7934 -4.7174 20 14 12.4572 1.3164 -3.6749 21 1 12.3054 0.3134 -4.7595 22 1 13.8681 1.7762 -3.6199 23 1 12.0862 0.7003 -2.3757 24 6 3.5807 -1.1969 0.0016 25 6 2.1982 -1.1969 0.0058 26 7 1.4581 -2.4788 0.0114 27 8 2.0617 -3.5300 0.1302 28 8 0.2454 -2.4825 -0.1024 29 1 -0.3633 -0.1238 -1.0201 30 1 -0.3633 0.9454 0.4030 31 1 -0.3633 -0.8217 0.6173 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.9238 -0.5358 2.0842 35 1 7.3776 0.2508 1.4246 36 1 5.9240 1.2170 1.7744 37 1 5.6293 1.2153 -1.6523 38 1 8.3014 0.6579 -0.5400 39 1 7.5933 -0.1876 -1.9372 40 1 10.1589 1.4918 -1.8311 41 1 9.5888 0.7090 -3.3245 42 1 12.6910 3.7873 -5.0606 43 1 4.1208 -2.1322 0.0029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178685120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:17 Heat of formation + Delta-G solvation = 19.929109 kcal Electronic energy + Delta-G solvation = -25394.556945 eV Core-core repulsion = 21634.961073 eV Total energy + Delta-G solvation = -3759.595872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.36182 -40.97374 -39.01581 -37.85023 -37.24132 -35.64734 -34.46795 -33.14952 -32.91791 -30.97902 -28.65688 -28.35683 -26.95040 -24.62914 -23.90158 -23.32153 -23.23296 -21.84624 -19.81343 -19.37147 -18.92342 -18.71038 -18.32325 -17.36567 -17.07769 -16.61901 -16.33636 -15.58326 -15.51150 -15.08348 -14.99579 -14.73222 -14.59173 -14.34426 -14.06902 -13.76586 -13.67188 -13.59218 -13.28080 -13.21244 -13.03795 -12.93711 -12.76986 -12.58009 -12.51324 -12.50424 -12.30202 -11.95898 -11.83618 -11.71495 -11.69918 -11.51690 -11.29957 -10.73483 -10.59435 -9.98864 -9.49953 -8.24398 -6.29854 -1.23227 -0.12050 0.28276 0.35963 1.44092 1.44490 1.55592 1.92918 1.93400 2.21737 2.41139 2.96908 3.11915 3.22630 3.27445 3.34440 3.66116 3.85955 3.89474 4.01952 4.09103 4.33086 4.36059 4.43106 4.51026 4.59393 4.61657 4.64372 4.76310 4.84842 4.88703 4.99645 5.02485 5.03311 5.08907 5.17301 5.24488 5.27466 5.44920 5.47541 5.56354 5.64410 5.96704 6.23170 6.26499 6.48250 6.74328 6.80970 7.34759 8.92436 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.002479 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.853080 B =11291.315137 C =11582.455379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 C -0.117 4.117 4 C -0.039 4.039 5 C -0.094 4.094 6 C 0.126 3.874 7 H 0.064 0.936 8 C -0.134 4.134 9 N -0.682 5.682 10 C 0.074 3.926 11 C 0.025 3.975 12 H 0.125 0.875 13 C 0.247 3.753 14 N -0.509 5.509 15 C -0.004 4.004 16 C -0.529 4.529 17 H 0.030 0.970 18 C 0.002 3.998 19 N -0.955 5.955 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.219 1.219 24 C -0.053 4.053 25 C -0.070 4.070 26 N 0.034 4.966 27 O -0.206 6.206 28 O -0.161 6.161 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.178 0.822 33 H 0.166 0.834 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.336 0.664 38 H 0.120 0.880 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.264 0.736 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 -8.556 17.989 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.023 4.023 3 C -0.135 4.135 4 C -0.057 4.057 5 C -0.096 4.096 6 C 0.017 3.983 7 H 0.082 0.918 8 C -0.192 4.192 9 N -0.313 5.313 10 C -0.056 4.056 11 C 0.003 3.997 12 H 0.143 0.857 13 C -0.069 4.069 14 N -0.186 5.186 15 C -0.043 4.043 16 C -0.567 4.567 17 H 0.048 0.952 18 C -0.195 4.195 19 N -0.596 5.596 20 Si 0.769 3.231 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.142 1.142 24 C -0.072 4.072 25 C -0.154 4.154 26 N 0.546 4.454 27 O -0.412 6.412 28 O -0.378 6.378 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.195 0.805 33 H 0.184 0.816 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.431 -7.501 17.049 26.203 hybrid contribution 0.621 -1.278 -1.117 1.807 sum -17.810 -8.779 15.932 25.458 Atomic orbital electron populations 1.21348 0.87626 1.05456 1.04507 1.20242 0.98939 0.90375 0.92708 1.21553 0.94180 0.97630 1.00137 1.21873 0.94273 0.99421 0.90115 1.20018 0.96555 0.91760 1.01239 1.20505 0.87645 0.94180 0.95959 0.91800 1.21800 1.02142 1.02518 0.92692 1.60730 1.03729 1.43974 1.22854 1.22097 0.91049 0.94435 0.98040 1.19125 0.91409 1.03041 0.86089 0.85730 1.29849 0.91646 0.90950 0.94431 1.81125 1.14244 1.11140 1.12109 1.19599 0.91183 0.95610 0.97890 1.21416 0.97960 1.04268 1.33101 0.95211 1.26046 1.00108 0.99025 0.94315 1.70088 1.18026 1.33499 1.37965 0.85728 0.77308 0.78952 0.81087 1.20539 1.21764 1.14156 1.20980 0.90668 1.00880 0.94721 1.21104 0.92763 0.82584 1.18913 1.43884 1.01098 1.03388 0.97039 1.94535 1.70122 1.21202 1.55331 1.94438 0.96793 1.93985 1.52558 0.89325 0.88105 0.89611 0.80500 0.81629 0.91830 0.90965 0.91419 0.84556 0.86203 0.94013 0.91417 0.95863 0.92729 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.70 71.24 0.62 -0.97 16 2 C -0.02 -0.31 5.88 -19.86 -0.12 -0.43 16 3 C -0.12 -1.28 9.67 22.27 0.22 -1.06 16 4 C -0.04 -0.47 9.01 22.27 0.20 -0.27 16 5 C -0.09 -1.36 4.71 -19.87 -0.09 -1.46 16 6 C 0.13 1.75 2.82 44.17 0.12 1.88 16 7 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 8 C -0.13 -1.55 9.39 71.98 0.68 -0.87 16 9 N -0.68 -11.70 5.69 -495.44 -2.82 -14.52 16 10 C 0.07 1.47 4.92 86.30 0.42 1.90 16 11 C 0.03 0.75 2.42 -12.60 -0.03 0.72 16 12 H 0.13 3.57 8.14 -2.39 -0.02 3.55 16 13 C 0.25 9.00 12.98 89.43 1.16 10.16 16 14 N -0.51 -21.03 18.55 20.02 0.37 -20.66 16 15 C 0.00 -0.14 3.49 29.85 0.10 -0.04 16 16 C -0.53 -27.51 9.15 25.60 0.23 -27.28 16 17 H 0.03 1.76 7.84 -2.91 -0.02 1.73 16 18 C 0.00 0.09 5.47 84.66 0.46 0.55 16 19 N -0.96 -58.20 13.96 21.45 0.30 -57.90 16 20 Si 0.95 40.31 27.47 68.60 1.88 42.19 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.22 -7.78 6.54 99.48 0.65 -7.13 16 24 C -0.05 -0.91 9.18 22.27 0.20 -0.71 16 25 C -0.07 -1.36 6.83 36.37 0.25 -1.11 16 26 N 0.03 0.84 4.45 -46.46 -0.21 0.63 16 27 O -0.21 -5.55 18.47 18.90 0.35 -5.21 16 28 O -0.16 -3.89 15.35 18.88 0.29 -3.60 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 0.65 8.04 -2.39 -0.02 0.63 16 31 H 0.09 1.26 5.84 -2.39 -0.01 1.25 16 32 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.17 1.66 7.72 -2.91 -0.02 1.63 16 34 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.07 0.80 7.45 -2.39 -0.02 0.79 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.34 6.57 7.06 -89.69 -0.63 5.94 16 38 H 0.12 1.89 7.44 -2.39 -0.02 1.88 16 39 H 0.04 0.84 8.05 -2.39 -0.02 0.82 16 40 H 0.07 2.23 7.20 -2.39 -0.02 2.22 16 41 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.15 2.49 7.60 -2.91 -0.02 2.47 16 Total: -1.00 -70.99 367.72 4.95 -66.04 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.35 Total: 12.03 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 4.43 Total: -18.99 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -2.36 Total: -92.45 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.64 Total: -8.81 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.88 Total: 42.19 kcal Total: -70.99 4.95 -66.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178685120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.967 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds