Wall clock time and date at job start Tue Mar 31 2020 11:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 120.00079 * 2 1 4 4 C 1.38220 * 119.99558 * 179.78447 * 3 2 1 5 5 C 1.38247 * 120.00428 * 0.46341 * 4 3 2 6 6 C 1.50704 * 120.00289 * 179.78889 * 5 4 3 7 7 H 1.08995 * 109.47068 * 159.98342 * 6 5 4 8 8 C 1.53005 * 109.46671 * 279.97900 * 6 5 4 9 9 N 1.46894 * 109.46932 * 39.97865 * 6 5 4 10 10 C 1.46902 * 110.99832 * 155.00372 * 9 6 5 11 11 C 1.52997 * 109.47026 * 180.02562 * 10 9 6 12 12 H 1.09000 * 109.47123 * 304.99645 * 11 10 9 13 13 C 1.47200 * 109.47230 * 64.99530 * 11 10 9 14 14 N 7.01072 * 136.29892 * 66.35590 * 2 1 3 15 15 C 1.53004 * 109.47317 * 184.99701 * 11 10 9 16 16 C 1.50700 * 109.47171 * 174.99829 * 15 11 10 17 17 H 1.07997 * 120.00285 * 359.97438 * 16 15 11 18 18 C 1.37875 * 119.99721 * 179.97438 * 16 15 11 19 19 N 1.31516 * 120.00248 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47203 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47239 * 120.00166 * 20 18 16 23 23 H 1.48497 * 109.47322 * 240.00294 * 20 18 16 24 24 C 1.38211 * 119.99983 * 359.77273 * 5 4 3 25 25 C 1.38218 * 119.99894 * 180.27177 * 2 1 3 26 26 N 1.48019 * 119.99851 * 359.97438 * 25 2 1 27 27 O 1.21798 * 119.99748 * 173.50860 * 26 25 2 28 28 O 1.21797 * 119.99910 * 353.50602 * 26 25 2 29 29 H 1.08992 * 109.47315 * 262.80682 * 1 2 3 30 30 H 1.08999 * 109.47191 * 142.80542 * 1 2 3 31 31 H 1.09008 * 109.46874 * 22.80842 * 1 2 3 32 32 H 1.07992 * 120.00146 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.99353 * 180.25669 * 4 3 2 34 34 H 1.09007 * 109.46666 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.47560 * 299.99752 * 8 6 5 36 36 H 1.08995 * 109.47014 * 60.00409 * 8 6 5 37 37 H 1.00893 * 111.00000 * 31.04744 * 9 6 5 38 38 H 1.09003 * 109.46799 * 299.99754 * 10 9 6 39 39 H 1.08995 * 109.47218 * 59.99809 * 10 9 6 40 40 H 1.09000 * 109.46744 * 295.00426 * 15 11 10 41 41 H 1.08999 * 109.46416 * 54.99586 * 15 11 10 42 42 H 0.96997 * 120.00361 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.00447 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0045 5 6 4.2717 -0.0001 -0.0007 6 6 5.7787 -0.0001 -0.0006 7 1 6.1420 -0.9672 0.3470 8 6 6.2887 0.2560 -1.4202 9 7 6.2683 1.0572 0.8939 10 6 7.6157 0.7455 1.3894 11 6 8.0903 1.8666 2.3160 12 1 8.0297 2.8208 1.7925 13 6 7.2350 1.9088 3.5133 14 7 6.5754 1.9426 4.4371 15 6 9.5389 1.6047 2.7330 16 6 10.0463 2.7687 3.5447 17 1 9.4003 3.6112 3.7429 18 6 11.3352 2.7581 4.0342 19 7 12.1220 1.7323 3.7924 20 14 11.9644 4.2012 5.0396 21 1 10.8919 5.2203 5.1677 22 1 12.3609 3.7280 6.3903 23 1 13.1404 4.8022 4.3607 24 6 3.5806 -1.1970 -0.0056 25 6 2.1980 -1.1970 -0.0057 26 7 1.4579 -2.4788 -0.0112 27 8 2.0610 -3.5297 -0.1354 28 8 0.2458 -2.4827 0.1086 29 1 -0.3633 -0.1287 1.0195 30 1 -0.3633 -0.8186 -0.6212 31 1 -0.3633 0.9474 -0.3984 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0087 34 1 7.3788 0.2564 -1.4200 35 1 5.9254 -0.5285 -2.0840 36 1 5.9255 1.2231 -1.7677 37 1 5.6279 1.2091 1.6586 38 1 7.5916 -0.1949 1.9402 39 1 8.3009 0.6556 0.5466 40 1 9.5857 0.6957 3.3327 41 1 10.1571 1.4852 1.8433 42 1 13.0289 1.7250 4.1364 43 1 4.1206 -2.1323 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178685133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:20 Heat of formation + Delta-G solvation = 17.868263 kcal Electronic energy + Delta-G solvation = -25342.295494 eV Core-core repulsion = 21582.610256 eV Total energy + Delta-G solvation = -3759.685237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.36276 -40.97645 -38.99754 -37.84846 -37.24947 -35.67117 -34.46966 -33.04276 -32.87377 -30.81147 -28.63856 -28.08898 -26.93779 -24.76581 -23.90382 -23.60272 -23.23731 -21.86720 -19.81240 -19.36426 -18.71687 -18.56124 -18.25703 -17.35028 -17.06696 -16.62896 -16.49643 -15.58379 -15.52829 -15.11104 -14.87056 -14.69554 -14.48803 -14.33422 -13.94285 -13.75540 -13.63966 -13.52479 -13.26965 -13.11726 -13.03270 -12.92799 -12.79543 -12.59707 -12.53418 -12.49764 -12.31735 -12.25705 -12.01845 -11.82453 -11.69442 -11.39775 -11.14480 -10.59224 -10.55845 -9.98984 -9.52637 -8.20010 -6.27809 -1.23155 -0.12140 0.28303 0.35995 1.38721 1.42373 1.51920 1.94021 1.95723 2.21772 2.41001 2.96720 3.15642 3.24330 3.27539 3.34555 3.66102 3.86307 3.89421 4.01919 4.13065 4.32350 4.36272 4.42910 4.50911 4.60848 4.65153 4.68767 4.77208 4.86123 4.94695 4.99754 5.02693 5.04403 5.08830 5.18419 5.24851 5.43317 5.48393 5.56378 5.63047 5.79571 5.92915 6.20223 6.23743 6.48277 6.75018 6.88011 7.41081 8.90998 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.002363 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.541088 B =11846.196370 C =12086.591467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.020 4.020 3 C -0.115 4.115 4 C -0.038 4.038 5 C -0.094 4.094 6 C 0.125 3.875 7 H 0.059 0.941 8 C -0.133 4.133 9 N -0.677 5.677 10 C 0.077 3.923 11 C 0.020 3.980 12 H 0.129 0.871 13 C 0.250 3.750 14 N -0.506 5.506 15 C 0.037 3.963 16 C -0.536 4.536 17 H 0.055 0.945 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.947 3.053 21 H -0.268 1.268 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.054 4.054 25 C -0.070 4.070 26 N 0.034 4.966 27 O -0.210 6.210 28 O -0.158 6.158 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.180 0.820 33 H 0.168 0.832 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.337 0.663 38 H 0.032 0.968 39 H 0.111 0.889 40 H -0.002 1.002 41 H 0.039 0.961 42 H 0.263 0.737 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.465 -1.205 -14.557 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 C -0.133 4.133 4 C -0.056 4.056 5 C -0.096 4.096 6 C 0.016 3.984 7 H 0.077 0.923 8 C -0.191 4.191 9 N -0.308 5.308 10 C -0.053 4.053 11 C -0.001 4.001 12 H 0.146 0.854 13 C -0.066 4.066 14 N -0.184 5.184 15 C -0.002 4.002 16 C -0.574 4.574 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.773 3.227 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.074 4.074 25 C -0.153 4.153 26 N 0.546 4.454 27 O -0.415 6.415 28 O -0.375 6.375 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.197 0.803 33 H 0.185 0.815 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.051 0.949 39 H 0.129 0.871 40 H 0.017 0.983 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.670 -0.283 -13.663 23.951 hybrid contribution 0.666 -0.838 1.301 1.685 sum -19.004 -1.122 -12.362 22.698 Atomic orbital electron populations 1.21341 0.87527 1.05471 1.04523 1.20255 0.98981 0.90317 0.92651 1.21564 0.94077 0.97659 1.00030 1.21876 0.94324 0.99323 0.90075 1.19988 0.96340 0.91894 1.01345 1.20499 0.87869 0.94105 0.95948 0.92294 1.21795 1.01949 1.02639 0.92721 1.60748 1.03534 1.44013 1.22540 1.22012 0.90937 0.94556 0.97825 1.19235 0.91979 1.02775 0.86151 0.85357 1.29702 0.91505 0.90974 0.94377 1.81040 1.14161 1.11123 1.12060 1.18999 0.88839 0.95597 0.96765 1.21589 0.97805 1.04825 1.33228 0.92683 1.25703 0.97521 0.98249 0.97360 1.70031 1.08077 1.31421 1.46856 0.85668 0.78612 0.80017 0.78415 1.19275 1.21373 1.19860 1.20967 0.90768 1.00824 0.94811 1.21100 0.92688 0.82640 1.18921 1.43880 1.01087 1.03389 0.97044 1.94543 1.70153 1.21240 1.55533 1.94432 0.96835 1.93970 1.52283 0.89272 0.89696 0.87987 0.80272 0.81489 0.91353 0.91775 0.91133 0.84509 0.94927 0.87052 0.98334 0.94317 0.92766 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.68 71.23 0.62 -0.97 16 2 C -0.02 -0.31 5.88 -19.87 -0.12 -0.43 16 3 C -0.12 -1.27 9.67 22.27 0.22 -1.05 16 4 C -0.04 -0.48 9.01 22.27 0.20 -0.28 16 5 C -0.09 -1.48 4.71 -19.87 -0.09 -1.58 16 6 C 0.13 2.02 2.82 44.17 0.12 2.14 16 7 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 8 C -0.13 -1.83 9.39 71.98 0.68 -1.16 16 9 N -0.68 -13.02 5.69 -495.46 -2.82 -15.84 16 10 C 0.08 1.84 4.92 86.30 0.42 2.26 16 11 C 0.02 0.65 2.42 -12.60 -0.03 0.62 16 12 H 0.13 3.76 8.14 -2.39 -0.02 3.74 16 13 C 0.25 9.22 12.98 89.45 1.16 10.38 16 14 N -0.51 -20.63 18.53 20.00 0.37 -20.26 16 15 C 0.04 1.60 4.42 29.85 0.13 1.73 16 16 C -0.54 -27.33 8.60 25.60 0.22 -27.11 16 17 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 18 C 0.01 0.56 5.46 84.65 0.46 1.03 16 19 N -0.92 -51.95 13.29 21.45 0.28 -51.66 16 20 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C -0.05 -1.00 9.18 22.27 0.20 -0.80 16 25 C -0.07 -1.41 6.83 36.38 0.25 -1.17 16 26 N 0.03 0.86 4.45 -46.46 -0.21 0.66 16 27 O -0.21 -5.89 18.47 18.89 0.35 -5.54 16 28 O -0.16 -3.88 15.37 18.89 0.29 -3.59 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.26 5.87 -2.39 -0.01 1.24 16 31 H 0.10 0.64 8.04 -2.38 -0.02 0.62 16 32 H 0.18 0.82 8.05 -2.91 -0.02 0.79 16 33 H 0.17 1.71 7.72 -2.91 -0.02 1.68 16 34 H 0.07 0.97 7.45 -2.38 -0.02 0.95 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.34 7.05 7.06 -89.70 -0.63 6.41 16 38 H 0.03 0.83 8.05 -2.39 -0.02 0.81 16 39 H 0.11 2.37 7.43 -2.39 -0.02 2.35 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 43 H 0.15 2.72 7.61 -2.91 -0.02 2.70 16 Total: -1.00 -64.98 371.33 5.14 -59.84 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.40 Total: 8.30 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 4.45 Total: -16.37 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.37 Total: -87.11 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.64 Total: -9.12 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -64.98 5.14 -59.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178685133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.707 kcal (2) G-P(sol) polarization free energy of solvation -64.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds