Wall clock time and date at job start Tue Mar 31 2020 11:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47415 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99873 * 2 1 3 5 5 C 1.53002 * 109.47143 * 59.99957 * 4 2 1 6 6 C 1.52996 * 109.47343 * 60.00066 * 5 4 2 7 7 C 1.53002 * 109.46891 * 300.00400 * 6 5 4 8 8 H 1.09004 * 109.47006 * 299.99770 * 7 6 5 9 9 C 1.50696 * 109.46999 * 180.02562 * 7 6 5 10 10 O 1.21284 * 120.00109 * 239.99682 * 9 7 6 11 11 N 1.34777 * 120.00141 * 59.99958 * 9 7 6 12 12 S 1.65608 * 119.99860 * 180.02562 * 11 9 7 13 13 O 1.42102 * 104.27529 * 181.06745 * 12 11 9 14 14 O 1.42093 * 104.27575 * 308.92656 * 12 11 9 15 15 C 1.81397 * 104.44943 * 64.99777 * 12 11 9 16 16 C 1.52996 * 109.47172 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47624 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99509 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00407 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99892 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47305 * 90.00296 * 21 19 17 23 23 H 1.48506 * 109.47211 * 209.99880 * 21 19 17 24 24 H 1.48501 * 109.47320 * 329.99700 * 21 19 17 25 25 C 1.52996 * 109.47165 * 239.99978 * 2 1 3 26 26 H 1.09002 * 109.47045 * 300.00068 * 1 2 3 27 27 H 1.09000 * 109.47140 * 59.99976 * 1 2 3 28 28 H 1.08998 * 109.47624 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46986 * 300.00118 * 3 2 1 31 31 H 1.09002 * 109.47075 * 59.99390 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 33 33 H 1.09004 * 109.47261 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.46930 * 300.00065 * 5 4 2 35 35 H 1.09004 * 109.47059 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.47372 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.47261 * 59.99825 * 6 5 4 38 38 H 0.96995 * 120.00016 * 0.27258 * 11 9 7 39 39 H 1.09002 * 109.47515 * 299.99988 * 15 12 11 40 40 H 1.08999 * 109.47173 * 59.99866 * 15 12 11 41 41 H 1.09002 * 109.47161 * 299.99950 * 16 15 12 42 42 H 1.08999 * 109.46961 * 60.00006 * 16 15 12 43 43 H 0.97004 * 119.99866 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.47380 * 180.02562 * 25 2 1 45 45 H 1.09000 * 109.47054 * 59.99993 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2493 6 6 2.0399 -2.8850 0.0001 7 6 1.5300 -2.1638 -1.2492 8 1 0.4399 -2.1637 -1.2491 9 6 2.0317 -2.8746 -2.4796 10 8 2.7290 -2.2856 -3.2782 11 7 1.7055 -4.1648 -2.6926 12 16 2.2575 -4.9461 -4.0444 13 8 1.7036 -6.2510 -3.9457 14 8 1.9081 -4.0811 -5.1162 15 6 4.0581 -5.0011 -3.8319 16 6 4.6918 -5.7086 -5.0314 17 6 6.1879 -5.7539 -4.8552 18 1 6.6412 -5.3216 -3.9754 19 6 6.9777 -6.3470 -5.8171 20 7 6.4256 -6.8730 -6.8886 21 14 8.8319 -6.4037 -5.5982 22 1 9.2077 -7.6468 -4.8779 23 1 9.4884 -6.3858 -6.9302 24 1 9.2740 -5.2235 -4.8127 25 6 2.0400 -0.7212 -1.2492 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -0.2074 2.1392 33 1 3.1300 -0.7216 1.2490 34 1 0.4399 -2.1637 1.2493 35 1 1.8930 -2.6774 2.1395 36 1 1.6762 -3.9126 -0.0001 37 1 3.1299 -2.8850 0.0000 38 1 1.1446 -4.6347 -2.0559 39 1 4.4470 -3.9853 -3.7618 40 1 4.2998 -5.5464 -2.9196 41 1 4.3030 -6.7245 -5.1010 42 1 4.4502 -5.1637 -5.9439 43 1 6.9813 -7.2906 -7.5651 44 1 3.1300 -0.7217 -1.2490 45 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181256529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:14 Heat of formation + Delta-G solvation = -150.642683 kcal Electronic energy + Delta-G solvation = -25577.182259 eV Core-core repulsion = 21913.341039 eV Total energy + Delta-G solvation = -3663.841220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84912 -38.88616 -36.68612 -35.60734 -34.60987 -33.89633 -33.41982 -31.35105 -31.16617 -27.64443 -26.67232 -25.63905 -24.55347 -22.07111 -21.67434 -20.93852 -19.35743 -18.74999 -17.87187 -17.37527 -16.52993 -15.92377 -15.51033 -15.33458 -15.00106 -14.93380 -14.59102 -14.50908 -14.44017 -13.72837 -13.46751 -13.37479 -12.92816 -12.55362 -12.42109 -12.39258 -12.15194 -11.82911 -11.79755 -11.76062 -11.71264 -11.60409 -11.36540 -11.29535 -11.07929 -10.99529 -10.82642 -10.81052 -10.47156 -10.41014 -10.36148 -10.34047 -9.97735 -9.69218 -9.17320 -8.49438 -6.11647 -4.17091 0.51822 2.11941 2.75009 3.27274 3.33433 3.36833 3.94816 4.13264 4.24655 4.32228 4.37985 4.56276 4.64728 4.72744 4.76154 4.91443 4.96771 5.01461 5.12486 5.13527 5.23689 5.33523 5.37501 5.41914 5.54404 5.60237 5.62418 5.67853 5.68911 5.73419 5.76092 5.79621 5.88746 5.93555 6.02855 6.12899 6.21455 6.46377 6.66363 7.28870 7.35601 7.50428 7.81375 8.17303 8.85808 9.47415 10.99516 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.003327 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.364511 B = 8413.137624 C = 9198.105063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.109 4.109 8 H 0.107 0.893 9 C 0.535 3.465 10 O -0.487 6.487 11 N -1.059 6.059 12 S 2.564 3.436 13 O -0.956 6.956 14 O -0.939 6.939 15 C -0.575 4.575 16 C 0.029 3.971 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.094 4.094 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.427 0.573 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.075 0.925 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 12.191 19.323 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.199 4.199 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.132 4.132 8 H 0.125 0.875 9 C 0.322 3.678 10 O -0.358 6.358 11 N -0.820 5.820 12 S 2.665 3.335 13 O -0.947 6.947 14 O -0.929 6.929 15 C -0.710 4.710 16 C -0.010 4.010 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.132 4.132 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.262 0.738 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.563 12.254 17.866 25.044 hybrid contribution 1.146 -0.293 0.713 1.381 sum -11.416 11.961 18.579 24.872 Atomic orbital electron populations 1.22007 0.94673 1.01969 1.01794 1.20553 0.95686 0.95342 0.94949 1.21848 1.01221 0.95060 1.01731 1.21638 1.00917 0.95174 0.97122 1.21562 1.01162 0.95686 0.97185 1.21594 1.02048 0.98884 0.92868 1.21527 1.02739 0.96704 0.92242 0.87490 1.20711 0.78747 0.80632 0.87755 1.90904 1.34724 1.64680 1.45468 1.55432 1.60756 1.21620 1.44242 1.06710 0.79874 0.73580 0.73357 1.93587 1.77760 1.38216 1.85090 1.93593 1.82537 1.65907 1.50899 1.30330 1.18503 1.11197 1.10933 1.18989 0.97447 0.95338 0.89202 1.20976 0.90122 1.38389 1.06360 0.91975 1.25063 0.99310 0.95087 0.95016 1.69955 1.35880 1.37597 1.09417 0.86445 0.84592 0.78508 0.77604 1.20464 1.20976 1.19713 1.21499 1.01810 0.92123 0.97765 0.92709 0.92545 0.92122 0.92472 0.92477 0.92700 0.91861 0.91655 0.91343 0.91433 0.91057 0.90713 0.73780 0.85093 0.86082 0.94777 0.94593 0.92507 0.90618 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 7.78 37.16 0.29 -0.64 16 2 C -0.07 -0.46 0.77 -154.51 -0.12 -0.58 16 3 C -0.14 -0.98 8.47 37.16 0.31 -0.66 16 4 C -0.11 -0.70 4.73 -26.73 -0.13 -0.83 16 5 C -0.12 -0.69 5.65 -26.73 -0.15 -0.84 16 6 C -0.12 -0.83 5.10 -26.73 -0.14 -0.97 16 7 C -0.11 -0.98 2.25 -91.77 -0.21 -1.19 16 8 H 0.11 0.77 6.43 -51.93 -0.33 0.43 16 9 C 0.54 7.12 6.89 -10.99 -0.08 7.04 16 10 O -0.49 -8.51 14.09 -11.59 -0.16 -8.68 16 11 N -1.06 -13.54 5.49 31.22 0.17 -13.37 16 12 S 2.56 47.28 5.11 -107.50 -0.55 46.73 16 13 O -0.96 -19.12 18.08 -57.54 -1.04 -20.16 16 14 O -0.94 -20.93 17.04 -64.79 -1.10 -22.04 16 15 C -0.57 -11.55 5.82 37.16 0.22 -11.34 16 16 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 17 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 21 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.09 -0.88 3.30 -26.73 -0.09 -0.97 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.35 4.81 -51.93 -0.25 0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.35 6.43 -51.93 -0.33 0.02 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.41 7.57 -51.93 -0.39 0.02 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.43 3.66 8.21 -34.48 -0.28 3.38 16 39 H 0.13 2.59 7.19 -51.92 -0.37 2.22 16 40 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 45 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -36.31 364.87 -9.53 -45.84 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.42 Total: -0.54 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -0.63 Total: -23.71 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.91 Total: -39.39 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -2.31 Total: -50.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.55 Total: 46.73 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.31 -9.53 -45.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181256529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.807 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds