Wall clock time and date at job start Tue Mar 31 2020 11:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.53005 * 109.46992 * 119.99373 * 2 1 3 5 5 C 1.52999 * 109.46992 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47394 * 300.00464 * 5 4 2 7 7 C 1.52999 * 109.47120 * 59.99793 * 6 5 4 8 8 H 1.09005 * 109.46895 * 60.00590 * 7 6 5 9 9 C 1.50703 * 109.46909 * 179.97438 * 7 6 5 10 10 O 1.21286 * 119.99538 * 120.00204 * 9 7 6 11 11 N 1.34773 * 120.00239 * 300.00451 * 9 7 6 12 12 S 1.65606 * 120.00253 * 180.02562 * 11 9 7 13 13 O 1.42100 * 104.27450 * 308.92978 * 12 11 9 14 14 O 1.42093 * 104.28025 * 181.06894 * 12 11 9 15 15 C 1.81403 * 104.44724 * 64.99636 * 12 11 9 16 16 C 1.53001 * 109.47153 * 180.02562 * 15 12 11 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.52997 * 109.47409 * 300.00074 * 7 6 5 26 26 H 1.08993 * 109.47355 * 300.00178 * 1 2 3 27 27 H 1.09006 * 109.46797 * 60.00411 * 1 2 3 28 28 H 1.09000 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47285 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46979 * 299.99478 * 3 2 1 31 31 H 1.09002 * 109.47102 * 59.99831 * 3 2 1 32 32 H 1.09000 * 109.46597 * 60.00652 * 4 2 1 33 33 H 1.08993 * 109.47438 * 300.00399 * 4 2 1 34 34 H 1.09006 * 109.46797 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.47076 * 60.00326 * 5 4 2 36 36 H 1.09004 * 109.46924 * 299.99533 * 6 5 4 37 37 H 1.08999 * 109.47208 * 180.02562 * 6 5 4 38 38 H 0.97001 * 119.99888 * 359.97438 * 11 9 7 39 39 H 1.09002 * 109.46959 * 60.00458 * 15 12 11 40 40 H 1.08998 * 109.47334 * 299.99936 * 15 12 11 41 41 H 1.09007 * 109.46922 * 59.99828 * 16 15 12 42 42 H 1.09003 * 109.46836 * 300.00583 * 16 15 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.47175 * 179.97438 * 25 7 6 45 45 H 1.09004 * 109.46806 * 300.00364 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5700 -0.7217 1.2490 6 6 4.0795 -1.4433 -0.0001 7 6 3.5695 -0.7222 -1.2494 8 1 3.9333 0.3054 -1.2497 9 6 4.0719 -1.4326 -2.4798 10 8 3.2838 -1.8936 -3.2781 11 7 5.3970 -1.5558 -2.6930 12 16 5.9491 -2.3360 -4.0454 13 8 5.2499 -3.5731 -4.0462 14 8 7.3640 -2.2942 -3.9211 15 6 5.4002 -1.2938 -5.4250 16 6 5.8544 -1.9164 -6.7467 17 6 5.3989 -1.0503 -7.8927 18 1 4.8416 -0.1459 -7.6979 19 6 5.6937 -1.4124 -9.1901 20 7 6.3728 -2.5134 -9.4273 21 14 5.1285 -0.3391 -10.6106 22 1 5.5695 -0.9433 -11.8935 23 1 3.6472 -0.2364 -10.5946 24 1 5.7201 1.0160 -10.4731 25 6 2.0395 -0.7216 -1.2492 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7488 1.2493 33 1 1.6766 -0.2073 2.1393 34 1 3.9333 -1.2359 2.1389 35 1 3.9337 0.3058 1.2488 36 1 3.7158 -2.4709 0.0002 37 1 5.1695 -1.4441 -0.0001 38 1 6.0273 -1.1869 -2.0547 39 1 5.8338 -0.2989 -5.3236 40 1 4.3128 -1.2191 -5.4137 41 1 5.4204 -2.9112 -6.8478 42 1 6.9418 -1.9915 -6.7582 43 1 6.5798 -2.7682 -10.3401 44 1 1.6762 -0.2075 -2.1389 45 1 1.6759 -1.7492 -1.2489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181256544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:16 Heat of formation + Delta-G solvation = -150.598632 kcal Electronic energy + Delta-G solvation = -25525.343970 eV Core-core repulsion = 21861.504660 eV Total energy + Delta-G solvation = -3663.839310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84864 -38.88794 -36.68541 -35.60608 -34.61082 -33.89219 -33.42550 -31.35512 -31.16608 -27.63940 -26.67541 -25.63190 -24.55980 -22.06226 -21.69879 -20.92501 -19.37331 -18.73819 -17.87352 -17.38083 -16.50341 -15.93830 -15.59383 -15.23053 -15.02020 -14.94235 -14.58730 -14.49306 -14.45656 -13.73381 -13.50452 -13.34972 -12.92483 -12.54644 -12.43975 -12.37131 -12.15590 -11.82794 -11.79780 -11.76480 -11.70933 -11.60428 -11.36348 -11.30097 -11.06458 -10.99696 -10.83386 -10.81703 -10.47936 -10.39589 -10.37426 -10.34849 -9.97087 -9.69433 -9.18191 -8.48955 -6.11448 -4.16997 0.51869 2.11150 2.75806 3.28842 3.33243 3.35444 3.95647 4.11886 4.24468 4.31626 4.38064 4.56773 4.66627 4.70700 4.75773 4.91334 4.96550 5.01081 5.12147 5.13141 5.23726 5.33171 5.37718 5.41827 5.54540 5.60074 5.62124 5.67070 5.68977 5.73190 5.76262 5.79602 5.88366 5.93289 6.02895 6.12661 6.21385 6.46356 6.66319 7.28798 7.35634 7.50357 7.81341 8.17432 8.85679 9.47414 10.99677 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.003267 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.218347 B = 8567.490111 C = 9571.868702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C -0.148 4.148 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.109 4.109 8 H 0.109 0.891 9 C 0.535 3.465 10 O -0.487 6.487 11 N -1.059 6.059 12 S 2.565 3.435 13 O -0.939 6.939 14 O -0.956 6.956 15 C -0.576 4.576 16 C 0.030 3.970 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.891 5.891 21 Si 0.902 3.098 22 H -0.285 1.285 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.094 4.094 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.427 0.573 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.266 0.734 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 7.725 24.005 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C -0.205 4.205 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.132 4.132 8 H 0.127 0.873 9 C 0.321 3.679 10 O -0.358 6.358 11 N -0.820 5.820 12 S 2.665 3.335 13 O -0.929 6.929 14 O -0.947 6.947 15 C -0.710 4.710 16 C -0.009 4.009 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.729 3.271 22 H -0.211 1.211 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.132 4.132 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.262 0.738 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.350 6.424 23.338 25.297 hybrid contribution -0.118 1.269 -0.696 1.452 sum -7.468 7.693 22.642 25.052 Atomic orbital electron populations 1.21848 0.94271 1.01971 1.01772 1.20556 0.95578 0.95483 0.94920 1.22012 1.01318 0.95284 1.01855 1.21634 0.95316 1.00710 0.97163 1.21567 0.95931 1.00958 0.97148 1.21577 1.00709 1.00106 0.92916 1.21532 0.98515 1.00887 0.92289 0.87343 1.20714 0.81016 0.77979 0.88148 1.90905 1.54218 1.44475 1.46170 1.55435 1.15119 1.69366 1.42128 1.06705 0.74367 0.76620 0.75812 1.93594 1.74281 1.39882 1.85129 1.93585 1.28707 1.87067 1.85292 1.30339 1.12347 1.13418 1.14928 1.18984 0.97571 0.97038 0.87338 1.20942 1.36347 1.08537 0.90138 0.92019 1.25067 0.94939 0.95350 0.99097 1.69947 1.38704 1.23207 1.21000 0.86501 0.79185 0.80370 0.81052 1.21054 1.20013 1.20071 1.21499 0.91804 1.02093 0.97807 0.92699 0.92427 0.92522 0.92100 0.92471 0.92706 0.91734 0.91853 0.91497 0.91277 0.90858 0.91163 0.73779 0.86089 0.85092 0.94594 0.94785 0.92445 0.90651 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.47 37.16 0.31 -0.66 16 2 C -0.07 -0.46 0.77 -154.51 -0.12 -0.58 16 3 C -0.15 -0.93 7.78 37.16 0.29 -0.64 16 4 C -0.11 -0.70 4.73 -26.73 -0.13 -0.82 16 5 C -0.12 -0.70 5.65 -26.73 -0.15 -0.85 16 6 C -0.12 -0.86 5.10 -26.73 -0.14 -1.00 16 7 C -0.11 -0.99 2.25 -91.77 -0.21 -1.19 16 8 H 0.11 0.74 6.43 -51.93 -0.33 0.41 16 9 C 0.54 7.11 6.89 -10.99 -0.08 7.04 16 10 O -0.49 -8.51 14.09 -11.59 -0.16 -8.67 16 11 N -1.06 -13.54 5.50 31.22 0.17 -13.37 16 12 S 2.56 47.27 5.11 -107.50 -0.55 46.72 16 13 O -0.94 -20.88 17.04 -64.79 -1.10 -21.98 16 14 O -0.96 -19.12 18.08 -57.54 -1.04 -20.16 16 15 C -0.58 -11.59 5.82 37.16 0.22 -11.37 16 16 C 0.03 0.78 4.98 -27.89 -0.14 0.64 16 17 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 21 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.09 -0.88 3.30 -26.73 -0.09 -0.97 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.35 4.81 -51.92 -0.25 0.10 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.36 6.43 -51.93 -0.33 0.02 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 38 H 0.43 3.66 8.21 -34.47 -0.28 3.38 16 39 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 40 H 0.13 2.60 7.19 -51.93 -0.37 2.22 16 41 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -36.30 364.86 -9.53 -45.83 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.42 Total: -0.46 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -0.63 Total: -23.82 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.91 Total: -39.42 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -2.31 Total: -50.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 47.27 SS G_CDS: -0.55 Total: 46.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.30 -9.53 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181256544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.769 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds