Wall clock time and date at job start Tue Mar 31 2020 11:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.53005 * 109.46992 * 119.99373 * 2 1 3 5 5 C 1.52999 * 109.46992 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47394 * 300.00464 * 5 4 2 7 7 C 1.52999 * 109.47120 * 59.99793 * 6 5 4 8 8 H 1.09005 * 109.46895 * 60.00590 * 7 6 5 9 9 C 1.50703 * 109.46909 * 179.97438 * 7 6 5 10 10 O 1.21286 * 119.99538 * 120.00204 * 9 7 6 11 11 N 1.34773 * 120.00239 * 300.00451 * 9 7 6 12 12 S 1.65606 * 120.00253 * 180.02562 * 11 9 7 13 13 O 1.42100 * 104.27450 * 308.92978 * 12 11 9 14 14 O 1.42093 * 104.28025 * 181.06894 * 12 11 9 15 15 C 1.81403 * 104.44724 * 64.99636 * 12 11 9 16 16 C 1.53001 * 109.47153 * 180.02562 * 15 12 11 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.52997 * 109.47409 * 300.00074 * 7 6 5 26 26 H 1.08993 * 109.47355 * 300.00178 * 1 2 3 27 27 H 1.09006 * 109.46797 * 60.00411 * 1 2 3 28 28 H 1.09000 * 109.46917 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47285 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46979 * 299.99478 * 3 2 1 31 31 H 1.09002 * 109.47102 * 59.99831 * 3 2 1 32 32 H 1.09000 * 109.46597 * 60.00652 * 4 2 1 33 33 H 1.08993 * 109.47438 * 300.00399 * 4 2 1 34 34 H 1.09006 * 109.46797 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.47076 * 60.00326 * 5 4 2 36 36 H 1.09004 * 109.46924 * 299.99533 * 6 5 4 37 37 H 1.08999 * 109.47208 * 180.02562 * 6 5 4 38 38 H 0.97001 * 119.99888 * 359.97438 * 11 9 7 39 39 H 1.09002 * 109.46959 * 60.00458 * 15 12 11 40 40 H 1.08998 * 109.47334 * 299.99936 * 15 12 11 41 41 H 1.09007 * 109.46922 * 59.99828 * 16 15 12 42 42 H 1.09003 * 109.46836 * 300.00583 * 16 15 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.47175 * 179.97438 * 25 7 6 45 45 H 1.09004 * 109.46806 * 300.00364 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5700 -0.7217 1.2490 6 6 4.0795 -1.4433 -0.0001 7 6 3.5695 -0.7222 -1.2494 8 1 3.9333 0.3054 -1.2497 9 6 4.0719 -1.4326 -2.4798 10 8 3.2838 -1.8936 -3.2781 11 7 5.3970 -1.5558 -2.6930 12 16 5.9491 -2.3360 -4.0454 13 8 5.2499 -3.5731 -4.0462 14 8 7.3640 -2.2942 -3.9211 15 6 5.4002 -1.2938 -5.4250 16 6 5.8544 -1.9164 -6.7467 17 6 5.3989 -1.0503 -7.8927 18 1 4.8416 -0.1459 -7.6979 19 6 5.6937 -1.4124 -9.1901 20 7 6.3728 -2.5134 -9.4273 21 14 5.1285 -0.3391 -10.6106 22 1 5.5695 -0.9433 -11.8935 23 1 3.6472 -0.2364 -10.5946 24 1 5.7201 1.0160 -10.4731 25 6 2.0395 -0.7216 -1.2492 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7488 1.2493 33 1 1.6766 -0.2073 2.1393 34 1 3.9333 -1.2359 2.1389 35 1 3.9337 0.3058 1.2488 36 1 3.7158 -2.4709 0.0002 37 1 5.1695 -1.4441 -0.0001 38 1 6.0273 -1.1869 -2.0547 39 1 5.8338 -0.2989 -5.3236 40 1 4.3128 -1.2191 -5.4137 41 1 5.4204 -2.9112 -6.8478 42 1 6.9418 -1.9915 -6.7582 43 1 6.5798 -2.7682 -10.3401 44 1 1.6762 -0.2075 -2.1389 45 1 1.6759 -1.7492 -1.2489 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181256544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:15 Heat of formation + Delta-G solvation = -176.262375 kcal Electronic energy + Delta-G solvation = -25526.456834 eV Core-core repulsion = 21861.504660 eV Total energy + Delta-G solvation = -3664.952173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79652 -39.71569 -38.30049 -37.25329 -35.99340 -35.73751 -34.09967 -33.20232 -31.98738 -28.13196 -27.67924 -27.26435 -25.46647 -23.65988 -22.67477 -21.86680 -20.76884 -19.39508 -19.35091 -18.68187 -18.24961 -17.35892 -16.73970 -16.57674 -16.51099 -16.16763 -15.52237 -15.39943 -15.21825 -15.20018 -14.50985 -14.36101 -14.07239 -13.85542 -13.77167 -13.54719 -13.39796 -13.28460 -12.94626 -12.90896 -12.86675 -12.74931 -12.44981 -12.34821 -12.28666 -12.25830 -12.04289 -11.96191 -11.88231 -11.75831 -11.55287 -11.13873 -11.02563 -10.95327 -10.82865 -10.66510 -8.28857 -6.43374 -1.02183 0.99767 1.39106 1.42271 1.43294 1.51477 2.35733 2.54413 2.97914 3.04456 3.21886 3.60703 3.71999 3.78400 3.98373 4.01528 4.07265 4.10644 4.27768 4.32940 4.45502 4.49385 4.59347 4.66091 4.76327 4.84546 4.90587 5.03882 5.10388 5.13366 5.16872 5.19407 5.20658 5.22191 5.25797 5.30035 5.41103 5.48213 5.53690 5.64153 5.68464 5.70477 6.01607 6.44020 6.68934 7.26628 8.83473 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.003267 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.218347 B = 8567.490111 C = 9571.868702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C -0.147 4.147 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.100 4.100 8 H 0.142 0.858 9 C 0.533 3.467 10 O -0.531 6.531 11 N -1.036 6.036 12 S 2.597 3.403 13 O -0.980 6.980 14 O -0.971 6.971 15 C -0.579 4.579 16 C 0.023 3.977 17 C -0.543 4.543 18 H 0.074 0.926 19 C -0.003 4.003 20 N -0.933 5.933 21 Si 0.976 3.024 22 H -0.282 1.282 23 H -0.266 1.266 24 H -0.259 1.259 25 C -0.096 4.096 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.450 0.550 39 H 0.152 0.848 40 H 0.133 0.867 41 H 0.003 0.997 42 H 0.016 0.984 43 H 0.269 0.731 44 H 0.060 0.940 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.406 10.428 25.957 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.204 4.204 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.122 4.122 8 H 0.159 0.841 9 C 0.322 3.678 10 O -0.405 6.405 11 N -0.803 5.803 12 S 2.696 3.304 13 O -0.970 6.970 14 O -0.961 6.961 15 C -0.712 4.712 16 C -0.016 4.016 17 C -0.582 4.582 18 H 0.092 0.908 19 C -0.201 4.201 20 N -0.572 5.572 21 Si 0.799 3.201 22 H -0.207 1.207 23 H -0.191 1.191 24 H -0.184 1.184 25 C -0.134 4.134 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.290 0.710 39 H 0.170 0.830 40 H 0.151 0.849 41 H 0.022 0.978 42 H 0.034 0.966 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.416 9.149 25.308 27.914 hybrid contribution -0.124 0.401 -1.213 1.283 sum -7.540 9.550 24.095 26.993 Atomic orbital electron populations 1.21862 0.94437 1.01589 1.02096 1.20530 0.95496 0.96065 0.94016 1.22020 1.01996 0.94250 1.02167 1.21644 0.95929 1.00182 0.97091 1.21567 0.95261 1.01799 0.96451 1.21674 1.01921 0.99301 0.92730 1.21662 0.98070 1.02039 0.90475 0.84067 1.21651 0.80287 0.77082 0.88830 1.90898 1.55190 1.46404 1.47976 1.54874 1.15752 1.68904 1.40807 1.05413 0.73400 0.75603 0.75955 1.93544 1.75117 1.42376 1.86003 1.93558 1.29638 1.87187 1.85728 1.30238 1.12658 1.15128 1.13134 1.18824 0.96255 0.95915 0.90622 1.21451 1.36384 1.09198 0.91172 0.90758 1.26135 0.94837 0.96755 1.02412 1.70092 1.40087 1.25215 1.21820 0.85332 0.78995 0.78776 0.76963 1.20701 1.19097 1.18386 1.21511 0.92214 1.01054 0.98656 0.91371 0.93077 0.93317 0.90985 0.93082 0.91568 0.92762 0.90470 0.90341 0.89585 0.92428 0.89242 0.70971 0.82952 0.84907 0.97837 0.96620 0.92249 0.92079 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.47 71.98 0.61 -1.21 16 2 C -0.06 -0.75 0.77 -52.18 -0.04 -0.79 16 3 C -0.15 -1.40 7.78 71.98 0.56 -0.84 16 4 C -0.11 -1.12 4.73 30.60 0.14 -0.98 16 5 C -0.11 -0.93 5.65 30.59 0.17 -0.76 16 6 C -0.12 -1.45 5.10 30.59 0.16 -1.29 16 7 C -0.10 -1.59 2.25 -11.54 -0.03 -1.61 16 8 H 0.14 1.38 6.43 -2.38 -0.02 1.36 16 9 C 0.53 13.61 6.89 87.66 0.60 14.22 16 10 O -0.53 -18.85 14.09 13.34 0.19 -18.66 16 11 N -1.04 -24.83 5.50 -173.53 -0.95 -25.78 16 12 S 2.60 95.89 5.11 -56.49 -0.29 95.61 16 13 O -0.98 -44.86 17.04 -120.72 -2.06 -46.92 16 14 O -0.97 -38.40 18.08 -127.65 -2.31 -40.71 16 15 C -0.58 -23.44 5.82 71.98 0.42 -23.02 16 16 C 0.02 1.24 4.98 29.85 0.15 1.39 16 17 C -0.54 -31.05 9.11 25.60 0.23 -30.81 16 18 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 19 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 20 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 21 Si 0.98 44.05 29.54 68.60 2.03 46.08 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 C -0.10 -1.74 3.30 30.59 0.10 -1.64 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.52 4.81 -2.38 -0.01 0.50 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.09 0.46 6.43 -2.39 -0.02 0.45 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.76 7.56 -2.39 -0.02 0.75 16 38 H 0.45 6.38 8.21 -96.74 -0.79 5.58 16 39 H 0.15 5.08 8.14 -2.39 -0.02 5.06 16 40 H 0.13 5.34 7.19 -2.39 -0.02 5.32 16 41 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 45 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -81.48 364.86 0.62 -80.86 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.18 Total: 13.90 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 3.55 Total: -47.05 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -0.67 Total: -83.12 kcal Atomic # 8 Polarization: -102.10 SS G_CDS: -4.18 Total: -106.28 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 95.89 SS G_CDS: -0.29 Total: 95.61 kcal Total: -81.48 0.62 -80.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181256544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.407 kcal (2) G-P(sol) polarization free energy of solvation -81.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds