Wall clock time and date at job start Tue Mar 31 2020 11:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.50698 * 109.47004 * 59.99614 * 3 2 1 5 5 O 1.21283 * 120.00472 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 S 1.65602 * 119.99511 * 179.72426 * 6 4 3 8 8 O 1.42109 * 104.27511 * 181.34842 * 7 6 4 9 9 O 1.42098 * 104.28120 * 309.20840 * 7 6 4 10 10 C 1.81394 * 104.44973 * 65.28308 * 7 6 4 11 11 C 1.53003 * 109.47387 * 179.97438 * 10 7 6 12 12 C 1.50707 * 109.47138 * 179.97438 * 11 10 7 13 13 H 1.08001 * 119.99608 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99869 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99869 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00166 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47450 * 59.99845 * 16 14 12 18 18 H 1.48500 * 109.47529 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46855 * 300.00322 * 16 14 12 20 20 C 1.52998 * 109.46652 * 119.99991 * 2 1 3 21 21 C 1.52999 * 109.47363 * 60.00174 * 20 2 1 22 22 C 1.52998 * 109.47306 * 59.99817 * 21 20 2 23 23 C 1.53006 * 109.46950 * 300.00173 * 22 21 20 24 24 C 1.52998 * 109.46935 * 239.99910 * 2 1 3 25 25 H 1.09001 * 109.46592 * 60.00382 * 1 2 3 26 26 H 1.09002 * 109.46680 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47127 * 300.00256 * 1 2 3 28 28 H 1.09003 * 109.46690 * 299.99964 * 3 2 1 29 29 H 1.08993 * 109.46773 * 180.02562 * 3 2 1 30 30 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 31 31 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 32 32 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 33 33 H 1.08994 * 109.46789 * 299.99279 * 11 10 7 34 34 H 1.08993 * 109.47045 * 59.99537 * 11 10 7 35 35 H 0.97007 * 119.99442 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.46908 * 180.02562 * 20 2 1 37 37 H 1.09003 * 109.47244 * 299.99905 * 20 2 1 38 38 H 1.09001 * 109.47054 * 299.99844 * 21 20 2 39 39 H 1.08995 * 109.46838 * 179.97438 * 21 20 2 40 40 H 1.09001 * 109.47080 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47042 * 60.00020 * 22 21 20 42 42 H 1.09007 * 109.46697 * 299.99754 * 23 22 21 43 43 H 1.08998 * 109.46912 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.47540 * 59.99982 * 24 2 1 45 45 H 1.09001 * 109.46719 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5377 2.1529 1.2304 5 8 0.8407 1.5634 2.0290 6 7 1.8637 3.4431 1.4439 7 16 1.3060 4.2257 2.7925 8 8 1.8138 5.5469 2.6661 9 8 -0.0927 3.9751 2.7899 10 6 2.1040 3.3669 4.1767 11 6 1.6636 4.0058 5.4954 12 6 2.3262 3.2919 6.6454 13 1 2.9941 2.4649 6.4548 14 6 2.0796 3.6945 7.9408 15 7 1.2665 4.7019 8.1728 16 14 2.9013 2.8101 9.3662 17 1 4.3763 2.9180 9.2317 18 1 2.4738 3.4301 10.6461 19 1 2.5066 1.3785 9.3541 20 6 2.0400 -0.7213 1.2493 21 6 1.5300 -2.1638 1.2493 22 6 2.0400 -2.8850 0.0001 23 6 1.5300 -2.1638 -1.2492 24 6 2.0400 -0.7213 -1.2492 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 2.4214 3.9145 0.8054 31 1 1.8149 2.3159 4.1675 32 1 3.1866 3.4467 4.0784 33 1 1.9531 5.0566 5.5044 34 1 0.5811 3.9263 5.5940 35 1 1.0934 4.9854 9.0842 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -0.2074 2.1393 38 1 0.4400 -2.1637 1.2492 39 1 1.8936 -2.6776 2.1390 40 1 1.6770 -3.9128 0.0003 41 1 3.1300 -2.8851 0.0001 42 1 0.4400 -2.1638 -1.2492 43 1 1.8930 -2.6779 -2.1392 44 1 1.6767 -0.2075 -2.1392 45 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181289422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:39 Heat of formation + Delta-G solvation = -143.729169 kcal Electronic energy + Delta-G solvation = -25771.849027 eV Core-core repulsion = 22108.307599 eV Total energy + Delta-G solvation = -3663.541428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86507 -38.73677 -36.68950 -35.61012 -34.46853 -33.89556 -33.37302 -31.18116 -30.88500 -28.26448 -26.84375 -25.61886 -22.88409 -22.49576 -21.64005 -20.89068 -19.39121 -18.49684 -17.73343 -17.45252 -16.53589 -16.02003 -15.62690 -15.29645 -15.14383 -14.90412 -14.58785 -14.47395 -14.36363 -13.75197 -13.43349 -13.13588 -12.79284 -12.54018 -12.36295 -12.06229 -12.01882 -11.80293 -11.76725 -11.69538 -11.65906 -11.60572 -11.18176 -11.07846 -11.05932 -10.99210 -10.81065 -10.51825 -10.40350 -10.32721 -10.24894 -10.16168 -9.75448 -9.57450 -9.18182 -8.49355 -6.11848 -4.17425 0.51396 2.10308 2.75493 3.28444 3.33035 3.35067 4.00697 4.19410 4.33509 4.37672 4.49536 4.60488 4.71743 4.85773 4.91812 5.01180 5.14076 5.19874 5.23403 5.27506 5.33038 5.37535 5.42608 5.51188 5.59839 5.64830 5.72368 5.81414 5.86567 5.88070 5.95318 5.99743 6.10872 6.21738 6.27950 6.42285 6.45930 6.52490 6.68640 7.28471 7.35173 7.55126 7.80887 8.16903 8.85278 9.47100 10.99237 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.003707 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.089232 B = 7551.937113 C = 8969.013119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.045 4.045 3 C -0.136 4.136 4 C 0.532 3.468 5 O -0.480 6.480 6 N -1.061 6.061 7 S 2.565 3.435 8 O -0.957 6.957 9 O -0.939 6.939 10 C -0.575 4.575 11 C 0.030 3.970 12 C -0.519 4.519 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.891 5.891 16 Si 0.901 3.099 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.107 4.107 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.428 0.572 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.266 0.734 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.935 -11.153 -21.266 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.045 4.045 3 C -0.177 4.177 4 C 0.319 3.681 5 O -0.352 6.352 6 N -0.822 5.822 7 S 2.665 3.335 8 O -0.947 6.947 9 O -0.929 6.929 10 C -0.710 4.710 11 C -0.009 4.009 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.162 4.162 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.145 4.145 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.262 0.738 31 H 0.149 0.851 32 H 0.139 0.861 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.704 -10.750 -20.610 23.402 hybrid contribution 1.230 -0.530 0.556 1.450 sum 3.934 -11.279 -20.054 23.342 Atomic orbital electron populations 1.22247 0.93871 1.02501 1.03191 1.20323 0.96684 0.91645 0.95894 1.21940 1.02938 0.96850 0.96006 1.20706 0.78406 0.80508 0.88478 1.90795 1.33933 1.64161 1.46311 1.55477 1.62253 1.22194 1.42263 1.06707 0.75992 0.74958 0.75862 1.93588 1.81503 1.34355 1.85302 1.93595 1.28995 1.85136 1.85151 1.30334 1.11916 1.13782 1.14933 1.18980 0.98145 0.96380 0.87416 1.20937 1.28097 1.16757 0.90116 0.92028 1.25060 0.95162 0.95110 0.99104 1.69950 1.35387 1.26379 1.21148 0.86510 0.79691 0.79840 0.81117 1.20078 1.21057 1.20024 1.21881 0.99826 0.95727 0.98785 1.21541 1.01239 0.95607 0.97295 1.21553 1.00546 0.98641 0.94984 1.21553 1.01184 0.95339 0.97641 1.21585 1.00418 0.95670 0.96828 0.93501 0.92104 0.89609 0.88079 0.87975 0.73773 0.85054 0.86132 0.94818 0.94606 0.92452 0.92583 0.88938 0.91544 0.92169 0.92443 0.92276 0.91590 0.92376 0.92024 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 7.48 37.16 0.28 -1.42 16 2 C -0.04 -0.41 0.51 -154.51 -0.08 -0.49 16 3 C -0.14 -1.11 4.77 -27.88 -0.13 -1.25 16 4 C 0.53 6.59 6.98 -10.99 -0.08 6.51 16 5 O -0.48 -7.66 9.46 -11.65 -0.11 -7.77 16 6 N -1.06 -12.88 5.60 31.22 0.17 -12.71 16 7 S 2.56 46.10 5.11 -107.50 -0.55 45.55 16 8 O -0.96 -18.97 18.08 -57.54 -1.04 -20.01 16 9 O -0.94 -20.35 17.03 -64.81 -1.10 -21.46 16 10 C -0.58 -11.30 5.83 37.16 0.22 -11.08 16 11 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 12 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 16 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.13 -1.31 4.43 -26.73 -0.12 -1.43 16 21 C -0.12 -1.15 5.65 -26.73 -0.15 -1.30 16 22 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 23 C -0.12 -0.87 5.65 -26.73 -0.15 -1.02 16 24 C -0.11 -0.77 4.73 -26.73 -0.13 -0.90 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.60 4.81 -51.93 -0.25 0.35 16 27 H 0.09 1.16 5.51 -51.93 -0.29 0.87 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.43 3.40 8.79 -34.47 -0.30 3.10 16 31 H 0.13 2.51 7.20 -51.92 -0.37 2.14 16 32 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.21 5.51 -51.93 -0.29 0.93 16 38 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -35.60 357.50 -9.78 -45.38 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.20 Total: 1.27 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -1.05 Total: -26.10 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.91 Total: -38.61 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -2.25 Total: -49.23 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 46.10 SS G_CDS: -0.55 Total: 45.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.60 -9.78 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181289422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.351 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds