Wall clock time and date at job start Tue Mar 31 2020 11:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.50698 * 109.47004 * 59.99614 * 3 2 1 5 5 O 1.21283 * 120.00472 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99538 * 179.97438 * 4 3 2 7 7 S 1.65602 * 119.99511 * 179.72426 * 6 4 3 8 8 O 1.42109 * 104.27511 * 181.34842 * 7 6 4 9 9 O 1.42098 * 104.28120 * 309.20840 * 7 6 4 10 10 C 1.81394 * 104.44973 * 65.28308 * 7 6 4 11 11 C 1.53003 * 109.47387 * 179.97438 * 10 7 6 12 12 C 1.50707 * 109.47138 * 179.97438 * 11 10 7 13 13 H 1.08001 * 119.99608 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99869 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99869 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00166 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47450 * 59.99845 * 16 14 12 18 18 H 1.48500 * 109.47529 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46855 * 300.00322 * 16 14 12 20 20 C 1.52998 * 109.46652 * 119.99991 * 2 1 3 21 21 C 1.52999 * 109.47363 * 60.00174 * 20 2 1 22 22 C 1.52998 * 109.47306 * 59.99817 * 21 20 2 23 23 C 1.53006 * 109.46950 * 300.00173 * 22 21 20 24 24 C 1.52998 * 109.46935 * 239.99910 * 2 1 3 25 25 H 1.09001 * 109.46592 * 60.00382 * 1 2 3 26 26 H 1.09002 * 109.46680 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47127 * 300.00256 * 1 2 3 28 28 H 1.09003 * 109.46690 * 299.99964 * 3 2 1 29 29 H 1.08993 * 109.46773 * 180.02562 * 3 2 1 30 30 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 31 31 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 32 32 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 33 33 H 1.08994 * 109.46789 * 299.99279 * 11 10 7 34 34 H 1.08993 * 109.47045 * 59.99537 * 11 10 7 35 35 H 0.97007 * 119.99442 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.46908 * 180.02562 * 20 2 1 37 37 H 1.09003 * 109.47244 * 299.99905 * 20 2 1 38 38 H 1.09001 * 109.47054 * 299.99844 * 21 20 2 39 39 H 1.08995 * 109.46838 * 179.97438 * 21 20 2 40 40 H 1.09001 * 109.47080 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47042 * 60.00020 * 22 21 20 42 42 H 1.09007 * 109.46697 * 299.99754 * 23 22 21 43 43 H 1.08998 * 109.46912 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.47540 * 59.99982 * 24 2 1 45 45 H 1.09001 * 109.46719 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5377 2.1529 1.2304 5 8 0.8407 1.5634 2.0290 6 7 1.8637 3.4431 1.4439 7 16 1.3060 4.2257 2.7925 8 8 1.8138 5.5469 2.6661 9 8 -0.0927 3.9751 2.7899 10 6 2.1040 3.3669 4.1767 11 6 1.6636 4.0058 5.4954 12 6 2.3262 3.2919 6.6454 13 1 2.9941 2.4649 6.4548 14 6 2.0796 3.6945 7.9408 15 7 1.2665 4.7019 8.1728 16 14 2.9013 2.8101 9.3662 17 1 4.3763 2.9180 9.2317 18 1 2.4738 3.4301 10.6461 19 1 2.5066 1.3785 9.3541 20 6 2.0400 -0.7213 1.2493 21 6 1.5300 -2.1638 1.2493 22 6 2.0400 -2.8850 0.0001 23 6 1.5300 -2.1638 -1.2492 24 6 2.0400 -0.7213 -1.2492 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 2.4214 3.9145 0.8054 31 1 1.8149 2.3159 4.1675 32 1 3.1866 3.4467 4.0784 33 1 1.9531 5.0566 5.5044 34 1 0.5811 3.9263 5.5940 35 1 1.0934 4.9854 9.0842 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -0.2074 2.1393 38 1 0.4400 -2.1637 1.2492 39 1 1.8936 -2.6776 2.1390 40 1 1.6770 -3.9128 0.0003 41 1 3.1300 -2.8851 0.0001 42 1 0.4400 -2.1638 -1.2492 43 1 1.8930 -2.6779 -2.1392 44 1 1.6767 -0.2075 -2.1392 45 1 3.1300 -0.7216 -1.2490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181289422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:39 Heat of formation + Delta-G solvation = -169.049153 kcal Electronic energy + Delta-G solvation = -25772.946984 eV Core-core repulsion = 22108.307599 eV Total energy + Delta-G solvation = -3664.639385 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78282 -39.56421 -38.26356 -37.21286 -35.96584 -35.56574 -34.07850 -33.18401 -31.53922 -29.04908 -27.68956 -27.53196 -23.83731 -23.51714 -23.21769 -21.69681 -20.70089 -19.43039 -19.07856 -18.59915 -18.28875 -17.37036 -16.69953 -16.57607 -16.50680 -16.25147 -15.90159 -15.28594 -15.18604 -15.09430 -14.50463 -14.49558 -13.98938 -13.80722 -13.71135 -13.37804 -13.25006 -13.23419 -12.94474 -12.85863 -12.83680 -12.66723 -12.57771 -12.36947 -12.28335 -12.22042 -11.99238 -11.81440 -11.76695 -11.64436 -11.33967 -11.09013 -10.96386 -10.82575 -10.66186 -10.45736 -8.28405 -6.42717 -0.97573 1.10932 1.39023 1.43048 1.48586 1.51356 2.36027 2.58719 3.04692 3.06565 3.34239 3.65419 3.84213 3.88919 4.00871 4.05706 4.10168 4.25343 4.36550 4.48657 4.53979 4.59550 4.68205 4.73196 4.74822 4.78320 4.90973 4.98149 5.10068 5.19278 5.21008 5.22461 5.25426 5.29390 5.36552 5.40965 5.48902 5.54330 5.64855 5.66107 5.76909 5.79148 6.02477 6.60987 6.69708 7.27284 8.83886 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.003707 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.089232 B = 7551.937113 C = 8969.013119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.045 4.045 3 C -0.129 4.129 4 C 0.525 3.475 5 O -0.517 6.517 6 N -1.038 6.038 7 S 2.598 3.402 8 O -0.976 6.976 9 O -0.980 6.980 10 C -0.578 4.578 11 C 0.023 3.977 12 C -0.541 4.541 13 H 0.074 0.926 14 C -0.003 4.003 15 N -0.933 5.933 16 Si 0.975 3.025 17 H -0.260 1.260 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.101 4.101 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.450 0.550 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.014 0.986 34 H 0.003 0.997 35 H 0.268 0.732 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.366 -12.525 -23.647 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.045 4.045 3 C -0.170 4.170 4 C 0.314 3.686 5 O -0.391 6.391 6 N -0.806 5.806 7 S 2.697 3.303 8 O -0.966 6.966 9 O -0.970 6.970 10 C -0.711 4.711 11 C -0.016 4.016 12 C -0.580 4.580 13 H 0.092 0.908 14 C -0.201 4.201 15 N -0.573 5.573 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.165 4.165 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.139 4.139 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.290 0.710 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.032 0.968 34 H 0.021 0.979 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.162 -12.110 -23.001 26.502 hybrid contribution 0.431 -0.146 1.227 1.308 sum 5.593 -12.256 -21.774 25.605 Atomic orbital electron populations 1.22213 0.95458 1.02174 1.01972 1.20344 0.95420 0.92457 0.96302 1.22120 1.05030 0.95543 0.94313 1.21708 0.77539 0.79942 0.89415 1.90824 1.35615 1.64728 1.47902 1.54916 1.62534 1.22372 1.40777 1.05357 0.74718 0.74188 0.76049 1.93556 1.81557 1.35696 1.85807 1.93544 1.31763 1.85678 1.86043 1.30228 1.14033 1.13617 1.13187 1.18812 0.96174 0.95821 0.90780 1.21445 1.28280 1.17142 0.91159 0.90797 1.26119 0.95722 0.95851 1.02436 1.70097 1.37040 1.28177 1.21939 0.85350 0.79180 0.78599 0.77044 1.18420 1.20721 1.19122 1.21859 1.00444 0.95796 0.98370 1.21537 1.00440 0.95710 0.98208 1.21524 1.00891 0.98625 0.94289 1.21571 1.00801 0.95762 0.97683 1.21558 1.01297 0.95082 0.95925 0.92229 0.92130 0.93141 0.84861 0.84334 0.70978 0.84769 0.83193 0.96797 0.97867 0.92288 0.91363 0.92211 0.92900 0.93027 0.92169 0.91548 0.92354 0.90843 0.90359 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 7.48 71.99 0.54 -2.72 16 2 C -0.04 -0.70 0.51 -52.18 -0.03 -0.72 16 3 C -0.13 -1.61 4.77 29.85 0.14 -1.47 16 4 C 0.52 12.12 6.98 87.66 0.61 12.73 16 5 O -0.52 -16.69 9.46 13.42 0.13 -16.56 16 6 N -1.04 -23.26 5.60 -173.53 -0.97 -24.23 16 7 S 2.60 93.94 5.11 -56.49 -0.29 93.65 16 8 O -0.98 -38.52 18.08 -127.65 -2.31 -40.83 16 9 O -0.98 -43.92 17.03 -120.70 -2.06 -45.97 16 10 C -0.58 -23.03 5.83 71.98 0.42 -22.61 16 11 C 0.02 1.25 4.98 29.85 0.15 1.39 16 12 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 13 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 14 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 15 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 16 Si 0.98 44.03 29.54 68.60 2.03 46.05 16 17 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 C -0.13 -2.52 4.43 30.59 0.14 -2.39 16 21 C -0.12 -2.30 5.65 30.59 0.17 -2.13 16 22 C -0.12 -1.61 5.92 30.60 0.18 -1.43 16 23 C -0.12 -1.41 5.65 30.60 0.17 -1.23 16 24 C -0.10 -1.03 4.73 30.59 0.14 -0.89 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.18 4.81 -2.39 -0.01 1.17 16 27 H 0.05 1.40 5.51 -2.39 -0.01 1.39 16 28 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.45 5.70 8.79 -96.74 -0.85 4.85 16 31 H 0.13 5.26 7.20 -2.39 -0.02 5.24 16 32 H 0.15 4.95 8.14 -2.39 -0.02 4.93 16 33 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.60 5.51 -2.39 -0.01 1.59 16 38 H 0.05 1.11 6.43 -2.39 -0.02 1.10 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.77 6.43 -2.38 -0.02 0.76 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -81.39 357.50 0.29 -81.10 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.14 Total: 15.84 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 3.34 Total: -51.75 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -0.69 Total: -81.55 kcal Atomic # 8 Polarization: -99.13 SS G_CDS: -4.24 Total: -103.36 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 93.94 SS G_CDS: -0.29 Total: 93.65 kcal Total: -81.39 0.29 -81.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181289422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.946 kcal (2) G-P(sol) polarization free energy of solvation -81.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds