Wall clock time and date at job start Tue Mar 31 2020 11:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38136 * 119.57337 * 2 1 4 4 C 1.38800 * 119.31142 * 179.97438 * 3 2 1 5 5 C 1.38396 * 118.49747 * 0.26792 * 4 3 2 6 6 C 1.39041 * 119.09956 * 359.46969 * 5 4 3 7 7 N 1.39246 * 119.69785 * 180.24897 * 6 5 4 8 8 C 1.34777 * 120.00121 * 174.59686 * 7 6 5 9 9 O 1.21365 * 119.99755 * 3.99896 * 8 7 6 10 10 C 1.49371 * 120.00464 * 183.99721 * 8 7 6 11 11 O 1.21358 * 119.99420 * 357.79259 * 10 8 7 12 12 N 1.34773 * 120.00151 * 177.79626 * 10 8 7 13 13 C 1.46500 * 120.00035 * 354.58272 * 12 10 8 14 14 C 1.50697 * 109.47490 * 84.41430 * 13 12 10 15 15 H 1.08004 * 119.99966 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00367 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99567 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47354 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47031 * 119.99682 * 18 16 14 21 21 H 1.48496 * 109.47302 * 239.99761 * 18 16 14 22 22 C 1.46500 * 120.00124 * 174.57940 * 12 10 8 23 23 C 1.53003 * 109.46803 * 94.68280 * 22 12 10 24 24 C 1.52993 * 117.49911 * 243.62424 * 23 22 12 25 25 C 1.52996 * 60.00265 * 252.51216 * 24 23 22 26 26 N 1.31887 * 119.57308 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47741 * 89.99670 * 1 2 3 28 28 H 1.08999 * 109.47143 * 210.00194 * 1 2 3 29 29 H 1.08998 * 109.46870 * 329.99701 * 1 2 3 30 30 H 1.07999 * 120.34715 * 359.95826 * 3 2 1 31 31 H 1.07999 * 120.74814 * 180.02562 * 4 3 2 32 32 H 1.07996 * 120.44956 * 179.70278 * 5 4 3 33 33 H 0.97002 * 120.00360 * 354.59572 * 7 6 5 34 34 H 1.09001 * 109.47464 * 204.41561 * 13 12 10 35 35 H 1.09006 * 109.47145 * 324.41100 * 13 12 10 36 36 H 0.97003 * 119.99462 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47145 * 214.68556 * 22 12 10 38 38 H 1.08994 * 109.46789 * 334.68896 * 22 12 10 39 39 H 1.09002 * 115.54916 * 29.33570 * 23 22 12 40 40 H 1.09002 * 117.50149 * 359.97438 * 24 23 22 41 41 H 1.09004 * 117.50240 * 145.02630 * 24 23 22 42 42 H 1.09001 * 117.50243 * 252.51513 * 25 24 23 43 43 H 1.08997 * 117.50439 * 107.48739 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2014 0.0000 4 6 3.5767 1.1951 0.0005 5 6 4.2315 -0.0242 -0.0046 6 6 3.4811 -1.1947 0.0011 7 7 4.1270 -2.4283 0.0013 8 6 3.4107 -3.5641 0.1167 9 8 2.1984 -3.5164 0.1474 10 6 4.1088 -4.8816 0.2067 11 8 5.3192 -4.9329 0.1357 12 7 3.3945 -6.0132 0.3668 13 6 1.9456 -5.9420 0.5714 14 6 1.2535 -5.8506 -0.7641 15 1 1.8347 -5.8464 -1.6744 16 6 -0.1218 -5.7724 -0.8241 17 7 -0.8296 -5.7780 0.2843 18 14 -0.9796 -5.6583 -2.4795 19 1 0.0344 -5.6711 -3.5644 20 1 -1.8942 -6.8166 -2.6439 21 1 -1.7609 -4.3973 -2.5464 22 6 4.0668 -7.3144 0.3361 23 6 4.4019 -7.7490 1.7643 24 6 5.8803 -7.8987 2.1287 25 6 5.0054 -9.1419 1.9556 26 7 2.1579 -1.1471 0.0005 27 1 -0.3635 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6474 2.1360 -0.0007 31 1 4.1331 2.1207 0.0010 32 1 5.3106 -0.0659 -0.0092 33 1 5.0926 -2.4702 -0.0817 34 1 1.6081 -6.8365 1.0949 35 1 1.7054 -5.0607 1.1662 36 1 -1.7972 -5.7234 0.2421 37 1 3.4094 -8.0523 -0.1235 38 1 4.9859 -7.2348 -0.2444 39 1 3.7272 -7.3823 2.5379 40 1 6.6142 -7.6880 1.3509 41 1 6.1785 -7.6304 3.1422 42 1 4.7279 -9.6914 2.8552 43 1 5.1636 -9.7486 1.0641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194088752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:05 Heat of formation + Delta-G solvation = 22.004986 kcal Electronic energy + Delta-G solvation = -26805.715466 eV Core-core repulsion = 23046.209610 eV Total energy + Delta-G solvation = -3759.505856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68447 -39.61375 -37.93651 -36.85800 -35.39540 -34.17136 -32.62696 -32.33409 -31.00289 -27.99688 -27.44806 -26.68036 -24.39493 -22.97044 -22.31976 -22.12436 -21.76825 -20.33921 -19.15824 -17.50039 -16.90150 -16.50632 -16.24226 -16.00603 -15.51518 -15.18954 -14.99246 -14.52982 -14.33234 -14.08432 -13.88292 -13.75510 -13.21854 -13.05184 -12.84744 -12.31547 -12.20659 -12.02170 -11.99144 -11.83538 -11.51196 -11.37969 -11.29494 -10.89716 -10.79131 -10.50203 -10.31266 -10.24343 -9.95262 -9.68598 -9.57553 -9.53365 -9.30432 -8.48168 -8.17116 -8.01826 -7.82229 -5.97333 -3.98338 1.20892 1.46904 2.29488 2.80248 3.34224 3.41706 3.45473 3.82054 3.88576 4.12111 4.18553 4.48613 4.59308 4.83209 5.01167 5.05053 5.14934 5.18685 5.21019 5.28455 5.36583 5.40495 5.69519 5.70587 5.73924 5.81206 5.86312 5.99702 6.08250 6.09186 6.14256 6.23857 6.31119 6.31777 6.49774 6.52478 6.73051 6.95664 7.32106 7.41861 7.48134 7.91310 8.09895 8.23287 8.28117 8.53958 8.75070 9.00895 9.63942 11.11906 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.005368 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.344489 B = 5215.183653 C = 7534.154672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.166 3.834 3 C -0.217 4.217 4 C -0.046 4.046 5 C -0.223 4.223 6 C 0.377 3.623 7 N -0.651 5.651 8 C 0.471 3.529 9 O -0.373 6.373 10 C 0.509 3.491 11 O -0.561 6.561 12 N -0.557 5.557 13 C 0.230 3.770 14 C -0.511 4.511 15 H 0.053 0.947 16 C 0.072 3.928 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.283 1.283 22 C 0.147 3.853 23 C -0.161 4.161 24 C -0.175 4.175 25 C -0.178 4.178 26 N -0.472 5.472 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.421 0.579 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.260 0.740 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.448 8.246 1.994 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.239 4.239 4 C -0.072 4.072 5 C -0.246 4.246 6 C 0.145 3.855 7 N -0.300 5.300 8 C 0.250 3.750 9 O -0.233 6.233 10 C 0.291 3.709 11 O -0.442 6.442 12 N -0.286 5.286 13 C 0.111 3.889 14 C -0.549 4.549 15 H 0.071 0.929 16 C -0.131 4.131 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.209 1.209 22 C 0.024 3.976 23 C -0.181 4.181 24 C -0.212 4.212 25 C -0.216 4.216 26 N -0.188 5.188 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.258 0.742 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.443 7.287 2.068 11.343 hybrid contribution 0.401 0.851 -0.953 1.339 sum 8.844 8.138 1.115 12.070 Atomic orbital electron populations 1.20746 0.88751 1.03625 1.03226 1.21227 0.97047 0.87294 0.91710 1.21802 0.94844 0.99065 1.08141 1.21244 0.94252 0.97287 0.94453 1.21397 1.00735 0.91791 1.10698 1.18462 0.89035 0.85097 0.92876 1.43411 1.11515 1.03117 1.71965 1.20506 0.88440 0.85004 0.81032 1.91103 1.11443 1.84798 1.35966 1.19827 0.86622 0.85586 0.78820 1.90634 1.13631 1.87305 1.52653 1.48207 1.11546 1.03755 1.65113 1.19934 0.71305 0.99307 0.98337 1.21185 0.91463 1.50519 0.91764 0.92879 1.24760 0.97166 0.94858 0.96275 1.69925 1.06181 1.50376 1.26364 0.86534 0.79535 0.77490 0.84341 1.20070 1.21195 1.20935 1.21024 0.98008 0.84667 0.93923 1.22743 0.96414 0.99574 0.99335 1.22972 0.93941 1.01913 1.02361 1.22910 1.04845 0.90799 1.03028 1.67604 1.06853 1.29064 1.15287 0.90389 0.89614 0.90983 0.85155 0.84861 0.84876 0.74153 0.94854 0.91946 0.92997 0.89455 0.90363 0.87595 0.88696 0.89421 0.89038 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.17 36.00 0.37 -1.12 16 2 C 0.17 2.65 6.78 -82.61 -0.56 2.09 16 3 C -0.22 -2.68 9.73 -39.41 -0.38 -3.06 16 4 C -0.05 -0.52 10.17 -39.32 -0.40 -0.92 16 5 C -0.22 -2.86 9.94 -39.23 -0.39 -3.25 16 6 C 0.38 6.45 7.42 -154.81 -1.15 5.30 16 7 N -0.65 -11.33 5.38 -11.86 -0.06 -11.39 16 8 C 0.47 10.08 7.68 -11.62 -0.09 9.99 16 9 O -0.37 -9.35 10.39 5.48 0.06 -9.29 16 10 C 0.51 10.80 7.68 -11.62 -0.09 10.71 16 11 O -0.56 -11.59 16.04 5.49 0.09 -11.50 16 12 N -0.56 -11.98 2.47 -175.60 -0.43 -12.42 16 13 C 0.23 5.78 4.78 -5.20 -0.02 5.75 16 14 C -0.51 -14.10 7.78 -34.44 -0.27 -14.37 16 15 H 0.05 1.50 7.81 -52.48 -0.41 1.09 16 16 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 17 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 18 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 22 C 0.15 2.66 5.68 -4.04 -0.02 2.63 16 23 C -0.16 -2.56 6.01 -90.62 -0.54 -3.11 16 24 C -0.17 -2.40 10.18 -26.74 -0.27 -2.67 16 25 C -0.18 -2.28 10.25 -26.73 -0.27 -2.56 16 26 N -0.47 -9.21 7.80 -8.62 -0.07 -9.28 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.42 6.05 8.17 -40.82 -0.33 5.71 16 34 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 35 H 0.06 1.73 5.86 -51.93 -0.30 1.42 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 38 H 0.08 1.38 7.10 -51.93 -0.37 1.01 16 39 H 0.11 1.81 8.14 -51.93 -0.42 1.38 16 40 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -33.10 368.44 -9.38 -42.48 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.03 Total: 6.65 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -4.20 Total: 7.36 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.17 Total: -58.37 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.15 Total: -20.79 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.10 -9.38 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194088752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.485 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds