Wall clock time and date at job start Tue Mar 31 2020 11:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38136 * 119.57337 * 2 1 4 4 C 1.38800 * 119.31142 * 179.97438 * 3 2 1 5 5 C 1.38396 * 118.49747 * 0.26792 * 4 3 2 6 6 C 1.39041 * 119.09956 * 359.46969 * 5 4 3 7 7 N 1.39246 * 119.69785 * 180.24897 * 6 5 4 8 8 C 1.34777 * 120.00121 * 174.59686 * 7 6 5 9 9 O 1.21365 * 119.99755 * 3.99896 * 8 7 6 10 10 C 1.49371 * 120.00464 * 183.99721 * 8 7 6 11 11 O 1.21358 * 119.99420 * 357.79259 * 10 8 7 12 12 N 1.34773 * 120.00151 * 177.79626 * 10 8 7 13 13 C 1.46500 * 120.00035 * 354.58272 * 12 10 8 14 14 C 1.50697 * 109.47490 * 84.41430 * 13 12 10 15 15 H 1.08004 * 119.99966 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00367 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99567 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47354 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47031 * 119.99682 * 18 16 14 21 21 H 1.48496 * 109.47302 * 239.99761 * 18 16 14 22 22 C 1.46500 * 120.00124 * 174.57940 * 12 10 8 23 23 C 1.53003 * 109.46803 * 94.68280 * 22 12 10 24 24 C 1.52993 * 117.49911 * 243.62424 * 23 22 12 25 25 C 1.52996 * 60.00265 * 252.51216 * 24 23 22 26 26 N 1.31887 * 119.57308 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47741 * 89.99670 * 1 2 3 28 28 H 1.08999 * 109.47143 * 210.00194 * 1 2 3 29 29 H 1.08998 * 109.46870 * 329.99701 * 1 2 3 30 30 H 1.07999 * 120.34715 * 359.95826 * 3 2 1 31 31 H 1.07999 * 120.74814 * 180.02562 * 4 3 2 32 32 H 1.07996 * 120.44956 * 179.70278 * 5 4 3 33 33 H 0.97002 * 120.00360 * 354.59572 * 7 6 5 34 34 H 1.09001 * 109.47464 * 204.41561 * 13 12 10 35 35 H 1.09006 * 109.47145 * 324.41100 * 13 12 10 36 36 H 0.97003 * 119.99462 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47145 * 214.68556 * 22 12 10 38 38 H 1.08994 * 109.46789 * 334.68896 * 22 12 10 39 39 H 1.09002 * 115.54916 * 29.33570 * 23 22 12 40 40 H 1.09002 * 117.50149 * 359.97438 * 24 23 22 41 41 H 1.09004 * 117.50240 * 145.02630 * 24 23 22 42 42 H 1.09001 * 117.50243 * 252.51513 * 25 24 23 43 43 H 1.08997 * 117.50439 * 107.48739 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2014 0.0000 4 6 3.5767 1.1951 0.0005 5 6 4.2315 -0.0242 -0.0046 6 6 3.4811 -1.1947 0.0011 7 7 4.1270 -2.4283 0.0013 8 6 3.4107 -3.5641 0.1167 9 8 2.1984 -3.5164 0.1474 10 6 4.1088 -4.8816 0.2067 11 8 5.3192 -4.9329 0.1357 12 7 3.3945 -6.0132 0.3668 13 6 1.9456 -5.9420 0.5714 14 6 1.2535 -5.8506 -0.7641 15 1 1.8347 -5.8464 -1.6744 16 6 -0.1218 -5.7724 -0.8241 17 7 -0.8296 -5.7780 0.2843 18 14 -0.9796 -5.6583 -2.4795 19 1 0.0344 -5.6711 -3.5644 20 1 -1.8942 -6.8166 -2.6439 21 1 -1.7609 -4.3973 -2.5464 22 6 4.0668 -7.3144 0.3361 23 6 4.4019 -7.7490 1.7643 24 6 5.8803 -7.8987 2.1287 25 6 5.0054 -9.1419 1.9556 26 7 2.1579 -1.1471 0.0005 27 1 -0.3635 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6474 2.1360 -0.0007 31 1 4.1331 2.1207 0.0010 32 1 5.3106 -0.0659 -0.0092 33 1 5.0926 -2.4702 -0.0817 34 1 1.6081 -6.8365 1.0949 35 1 1.7054 -5.0607 1.1662 36 1 -1.7972 -5.7234 0.2421 37 1 3.4094 -8.0523 -0.1235 38 1 4.9859 -7.2348 -0.2444 39 1 3.7272 -7.3823 2.5379 40 1 6.6142 -7.6880 1.3509 41 1 6.1785 -7.6304 3.1422 42 1 4.7279 -9.6914 2.8552 43 1 5.1636 -9.7486 1.0641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194088752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:04 Heat of formation + Delta-G solvation = 1.674239 kcal Electronic energy + Delta-G solvation = -26806.597073 eV Core-core repulsion = 23046.209610 eV Total energy + Delta-G solvation = -3760.387463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09777 -41.02055 -39.41218 -38.25593 -36.93533 -35.74083 -34.40829 -33.68416 -32.24199 -29.77131 -28.80801 -28.22522 -25.87055 -24.86674 -23.49053 -23.20707 -23.06652 -21.66078 -20.66694 -19.00804 -18.56336 -18.43007 -17.68948 -17.11690 -16.86853 -16.78586 -16.46673 -16.06902 -15.94105 -15.57726 -15.14408 -15.01369 -14.66453 -14.50340 -14.29862 -13.82370 -13.70824 -13.49791 -13.37173 -13.10134 -13.02389 -12.83687 -12.71008 -12.58861 -12.37252 -12.32498 -11.91817 -11.75685 -11.62246 -11.32116 -10.86369 -10.73697 -10.67362 -10.47563 -9.78133 -9.64877 -9.17965 -8.14304 -6.21570 0.01081 0.41688 0.75804 1.33660 1.35312 1.37839 1.47066 2.27445 2.36931 2.51814 2.93897 2.95298 3.20316 3.25916 3.63771 3.81150 3.92186 4.00678 4.09805 4.11587 4.25671 4.34444 4.39188 4.60564 4.65284 4.72980 4.74567 4.77622 4.80742 4.84980 5.02422 5.04671 5.16499 5.23185 5.27311 5.28821 5.29089 5.38789 5.53041 5.75132 5.88535 6.04116 6.10713 6.28611 6.72867 6.82267 7.08653 7.35191 7.43788 8.94672 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009749 B = 0.005368 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.344489 B = 5215.183653 C = 7534.154672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.129 3.871 3 C -0.197 4.197 4 C -0.039 4.039 5 C -0.205 4.205 6 C 0.335 3.665 7 N -0.638 5.638 8 C 0.470 3.530 9 O -0.423 6.423 10 C 0.507 3.493 11 O -0.555 6.555 12 N -0.562 5.562 13 C 0.254 3.746 14 C -0.513 4.513 15 H 0.041 0.959 16 C 0.024 3.976 17 N -0.920 5.920 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.270 1.270 21 H -0.285 1.285 22 C 0.146 3.854 23 C -0.190 4.190 24 C -0.166 4.166 25 C -0.153 4.153 26 N -0.530 5.530 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.109 0.891 30 H 0.169 0.831 31 H 0.184 0.816 32 H 0.168 0.832 33 H 0.433 0.567 34 H 0.021 0.979 35 H 0.035 0.965 36 H 0.262 0.738 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 10.067 1.478 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.009 4.009 3 C -0.217 4.217 4 C -0.065 4.065 5 C -0.228 4.228 6 C 0.105 3.895 7 N -0.289 5.289 8 C 0.249 3.751 9 O -0.287 6.287 10 C 0.289 3.711 11 O -0.436 6.436 12 N -0.292 5.292 13 C 0.134 3.866 14 C -0.551 4.551 15 H 0.059 0.941 16 C -0.176 4.176 17 N -0.560 5.560 18 Si 0.777 3.223 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.211 1.211 22 C 0.024 3.976 23 C -0.209 4.209 24 C -0.203 4.203 25 C -0.190 4.190 26 N -0.247 5.247 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.128 0.872 30 H 0.186 0.814 31 H 0.201 0.799 32 H 0.186 0.814 33 H 0.273 0.727 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.436 9.130 1.546 13.952 hybrid contribution -0.103 0.438 -0.768 0.890 sum 10.333 9.568 0.779 14.104 Atomic orbital electron populations 1.20757 0.88562 1.03416 1.03188 1.21589 0.97670 0.87965 0.93696 1.22216 0.95752 0.98899 1.04879 1.21854 0.93977 0.98395 0.92243 1.21812 1.02301 0.90674 1.08012 1.18827 0.89090 0.85781 0.95805 1.43199 1.11860 1.02660 1.71149 1.20626 0.88119 0.85969 0.80393 1.91087 1.13194 1.85539 1.38899 1.19944 0.86748 0.85716 0.78695 1.90612 1.13096 1.87335 1.52544 1.48146 1.10304 1.05331 1.65386 1.19357 0.73363 0.97177 0.96749 1.21317 0.91757 1.49923 0.92141 0.94054 1.25488 0.97931 0.94714 0.99432 1.70024 1.06424 1.51441 1.28156 0.85633 0.78550 0.77690 0.80468 1.19953 1.19578 1.21145 1.21173 0.97679 0.82972 0.95735 1.22564 0.97985 1.03051 0.97306 1.23032 0.92233 1.02124 1.02948 1.23037 1.02117 0.89620 1.04272 1.67389 1.08766 1.31737 1.16770 0.90378 0.93643 0.87239 0.81385 0.79907 0.81444 0.72658 0.96135 0.94749 0.92863 0.89837 0.89728 0.89458 0.88573 0.88324 0.87378 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.94 10.17 71.24 0.72 -2.21 16 2 C 0.13 4.09 6.78 42.53 0.29 4.38 16 3 C -0.20 -4.22 9.73 22.38 0.22 -4.00 16 4 C -0.04 -0.70 10.17 22.44 0.23 -0.48 16 5 C -0.21 -4.67 9.94 22.50 0.22 -4.45 16 6 C 0.34 11.48 7.42 132.96 0.99 12.46 16 7 N -0.64 -22.66 5.38 -309.79 -1.67 -24.33 16 8 C 0.47 21.11 7.68 87.24 0.67 21.78 16 9 O -0.42 -22.71 10.39 -3.29 -0.03 -22.75 16 10 C 0.51 22.24 7.68 87.24 0.67 22.91 16 11 O -0.55 -22.99 16.04 -3.27 -0.05 -23.04 16 12 N -0.56 -25.28 2.47 -827.84 -2.05 -27.33 16 13 C 0.25 13.55 4.78 85.63 0.41 13.96 16 14 C -0.51 -29.60 7.78 25.60 0.20 -29.40 16 15 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 16 C 0.02 1.38 5.46 84.66 0.46 1.84 16 17 N -0.92 -56.04 13.29 21.45 0.28 -55.75 16 18 Si 0.95 46.69 29.54 68.60 2.03 48.71 16 19 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 22 C 0.15 5.40 5.68 86.38 0.49 5.89 16 23 C -0.19 -6.05 6.01 -10.79 -0.06 -6.11 16 24 C -0.17 -4.32 10.18 30.59 0.31 -4.01 16 25 C -0.15 -3.64 10.25 30.59 0.31 -3.32 16 26 N -0.53 -21.46 7.80 -181.19 -1.41 -22.88 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.11 2.18 8.08 -2.39 -0.02 2.16 16 30 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.43 12.32 8.17 -92.71 -0.76 11.57 16 34 H 0.02 1.14 8.03 -2.39 -0.02 1.12 16 35 H 0.03 2.06 5.86 -2.38 -0.01 2.05 16 36 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.08 3.07 8.11 -2.39 -0.02 3.06 16 38 H 0.08 2.97 7.10 -2.39 -0.02 2.96 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.10 2.49 8.03 -2.39 -0.02 2.47 16 41 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -77.32 368.44 3.50 -73.81 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.28 Total: 24.31 kcal Atomic # 6 Polarization: 23.11 SS G_CDS: 6.13 Total: 29.24 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -4.84 Total: -130.29 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.09 Total: -45.79 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.32 3.50 -73.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194088752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.485 kcal (2) G-P(sol) polarization free energy of solvation -77.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds