Wall clock time and date at job start Tue Mar 31 2020 11:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35277 * 126.70466 * 2 1 4 4 C 1.41958 * 103.95770 * 179.97438 * 3 2 1 5 5 N 1.39873 * 126.88806 * 180.02562 * 4 3 2 6 6 C 1.36740 * 124.95387 * 226.96459 * 5 4 3 7 7 C 1.50699 * 125.55841 * 0.03196 * 6 5 4 8 8 C 1.34412 * 108.87460 * 179.97438 * 6 5 4 9 9 C 1.46724 * 106.51725 * 359.97438 * 8 6 5 10 10 C 1.47265 * 126.88754 * 179.97438 * 9 8 6 11 11 O 1.21624 * 119.99927 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99862 * 0.03186 * 10 9 8 13 13 C 1.46497 * 119.99521 * 179.72514 * 12 10 9 14 14 H 1.08999 * 109.47120 * 324.99410 * 13 12 10 15 15 C 1.52992 * 109.47358 * 84.99888 * 13 12 10 16 16 C 1.50709 * 109.46948 * 204.99961 * 13 12 10 17 17 H 1.08003 * 119.99365 * 359.97438 * 16 13 12 18 18 C 1.37868 * 120.00101 * 179.97438 * 16 13 12 19 19 N 1.31513 * 120.00097 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00075 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47022 * 60.00063 * 20 18 16 22 22 H 1.48496 * 109.47420 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47295 * 300.00011 * 20 18 16 24 24 C 1.35510 * 124.94791 * 47.22748 * 5 4 3 25 25 C 1.50703 * 125.86047 * 0.03034 * 24 5 4 26 26 N 1.30662 * 106.22820 * 0.25757 * 4 3 2 27 27 O 1.20912 * 111.49312 * 359.53827 * 26 4 3 28 28 H 1.08997 * 109.47510 * 90.00088 * 1 2 3 29 29 H 1.09008 * 109.47268 * 210.00484 * 1 2 3 30 30 H 1.09005 * 109.47284 * 330.00153 * 1 2 3 31 31 H 1.08005 * 128.01971 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47268 * 275.15068 * 7 6 5 33 33 H 1.09002 * 109.47401 * 35.15157 * 7 6 5 34 34 H 1.08996 * 109.46932 * 155.14836 * 7 6 5 35 35 H 1.08002 * 126.73907 * 179.97438 * 8 6 5 36 36 H 0.97003 * 120.00057 * 359.97438 * 12 10 9 37 37 H 1.08998 * 109.47749 * 299.99613 * 15 13 12 38 38 H 1.08999 * 109.47396 * 59.99690 * 15 13 12 39 39 H 1.09008 * 109.47231 * 179.97438 * 15 13 12 40 40 H 0.97006 * 120.00163 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.47038 * 270.16619 * 25 24 5 42 42 H 1.08998 * 109.46585 * 30.16709 * 25 24 5 43 43 H 1.08996 * 109.46895 * 150.16469 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6247 0.5357 0.0006 5 7 4.8316 1.2427 0.0014 6 6 5.8946 0.9789 -0.8173 7 6 5.9512 -0.1112 -1.8563 8 6 6.8801 1.8513 -0.5449 9 6 6.3827 2.7214 0.5267 10 6 7.1025 3.8355 1.1665 11 8 6.5671 4.4782 2.0494 12 7 8.3545 4.1431 0.7735 13 6 9.0682 5.2552 1.4059 14 1 8.3614 6.0478 1.6514 15 6 9.7478 4.7635 2.6853 16 6 10.1103 5.7880 0.4564 17 1 10.2293 5.3423 -0.5202 18 6 10.9117 6.8442 0.8345 19 7 10.7672 7.3865 2.0238 20 14 12.2039 7.5041 -0.3421 21 1 11.5447 7.9807 -1.5845 22 1 12.9273 8.6315 0.2987 23 1 13.1672 6.4243 -0.6757 24 6 5.1196 2.2858 0.8170 25 6 4.2032 2.8688 1.8618 26 7 3.4764 -0.7625 -0.0047 27 8 2.3083 -1.0750 0.0007 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 2.0310 2.1264 -0.0004 32 1 6.2567 -1.0459 -1.3860 33 1 4.9663 -0.2358 -2.3063 34 1 6.6716 0.1597 -2.6281 35 1 7.8481 1.9019 -1.0213 36 1 8.7817 3.6303 0.0695 37 1 8.9942 4.3782 3.3721 38 1 10.4547 3.9709 2.4398 39 1 10.2793 5.5909 3.1556 40 1 11.3308 8.1300 2.2897 41 1 3.5988 3.6583 1.4152 42 1 3.5505 2.0867 2.2496 43 1 4.7977 3.2829 2.6761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194652270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:39 Heat of formation + Delta-G solvation = 68.163069 kcal Electronic energy + Delta-G solvation = -26075.203358 eV Core-core repulsion = 22317.699067 eV Total energy + Delta-G solvation = -3757.504291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.46789 -41.48744 -38.35562 -34.95890 -34.69215 -33.93326 -32.70655 -32.24932 -30.77409 -29.28853 -28.54899 -28.30208 -25.20752 -24.86743 -24.07845 -22.80525 -21.81740 -20.42291 -19.08775 -18.84956 -18.13598 -17.54747 -16.96527 -16.42565 -15.42350 -15.16957 -15.06638 -14.51915 -14.25573 -14.14407 -13.82118 -13.72364 -13.63585 -13.21251 -13.17605 -13.00693 -12.83687 -12.51992 -12.40379 -12.28826 -12.26508 -11.61948 -11.55632 -11.38739 -11.03342 -10.91329 -10.80450 -10.63255 -10.25512 -10.15800 -9.87661 -8.97799 -8.94949 -8.60648 -8.47228 -8.03434 -7.69659 -6.05595 -4.14243 0.88182 1.36762 2.10543 2.20496 2.47447 2.63515 3.30170 3.34913 3.36569 3.91948 4.15380 4.22425 4.29460 4.42920 4.52611 4.70908 4.78252 4.86073 4.87189 5.09676 5.11660 5.23817 5.26513 5.30607 5.44408 5.46948 5.53809 5.68491 5.72538 5.81246 5.90430 6.11654 6.36445 6.82687 6.91167 6.99470 7.07865 7.18475 7.25105 7.58147 7.68238 7.76275 7.80347 8.01732 8.23351 8.80916 8.88890 9.28964 9.53832 11.00439 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.002703 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.081943 B =10357.946558 C =10917.103023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.017 4.017 3 C -0.225 4.225 4 C 0.235 3.765 5 N -0.377 5.377 6 C 0.019 3.981 7 C -0.079 4.079 8 C -0.153 4.153 9 C -0.198 4.198 10 C 0.577 3.423 11 O -0.561 6.561 12 N -0.701 5.701 13 C 0.266 3.734 14 H 0.049 0.951 15 C -0.147 4.147 16 C -0.532 4.532 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.102 3.898 25 C -0.090 4.090 26 N -0.358 5.358 27 O 0.114 5.886 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.180 0.820 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.388 0.612 37 H 0.015 0.985 38 H 0.025 0.975 39 H 0.089 0.911 40 H 0.264 0.736 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.838 -16.120 -6.234 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.248 4.248 4 C -0.011 4.011 5 N -0.058 5.058 6 C -0.085 4.085 7 C -0.137 4.137 8 C -0.177 4.177 9 C -0.208 4.208 10 C 0.363 3.637 11 O -0.442 6.442 12 N -0.348 5.348 13 C 0.164 3.836 14 H 0.067 0.933 15 C -0.205 4.205 16 C -0.570 4.570 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.522 5.522 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.009 4.009 25 C -0.147 4.147 26 N -0.062 5.062 27 O 0.046 5.954 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.197 0.803 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.172 0.828 36 H 0.221 0.779 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.484 -16.684 -5.502 26.234 hybrid contribution 0.767 0.848 -1.011 1.526 sum -18.717 -15.836 -6.513 25.368 Atomic orbital electron populations 1.20409 0.83187 1.05129 1.04517 1.24388 0.96596 0.85526 1.01545 1.22380 0.89767 1.01888 1.10802 1.20305 0.87407 0.88481 1.04951 1.40088 1.09187 1.25767 1.30784 1.20290 0.87425 1.02263 0.98555 1.20293 1.02538 0.95292 0.95532 1.21915 0.99012 0.96729 1.00021 1.20581 0.94893 1.02130 1.03150 1.17221 0.81874 0.82323 0.82302 1.90681 1.68213 1.53066 1.32281 1.46309 1.14185 1.35063 1.39236 1.18718 0.90881 0.83399 0.90568 0.93337 1.22075 0.98880 1.01054 0.98525 1.21203 1.18257 1.16720 1.00842 0.92149 1.24878 0.97267 0.96218 0.95362 1.69899 1.39504 1.24015 1.18786 0.86518 0.81317 0.78462 0.80840 1.20208 1.21184 1.20192 1.20468 0.96017 0.89470 0.94909 1.20584 0.97810 0.99601 0.96711 1.74141 0.97193 1.14250 1.20585 1.84892 1.10486 1.32576 1.67448 0.88971 0.89410 0.88588 0.80255 0.90893 0.92339 0.89694 0.82840 0.77908 0.96602 0.95534 0.89218 0.92600 0.90410 0.92480 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.45 36.01 0.38 0.17 16 2 C -0.02 -0.12 7.48 -35.36 -0.26 -0.39 16 3 C -0.23 -2.10 10.03 -39.21 -0.39 -2.50 16 4 C 0.24 3.01 6.53 -154.53 -1.01 2.00 16 5 N -0.38 -5.59 2.93 -54.17 -0.16 -5.75 16 6 C 0.02 0.27 6.82 -81.76 -0.56 -0.28 16 7 C -0.08 -0.88 9.78 36.01 0.35 -0.52 16 8 C -0.15 -2.37 10.43 -37.51 -0.39 -2.76 16 9 C -0.20 -3.62 6.29 -103.35 -0.65 -4.27 16 10 C 0.58 12.67 7.77 -12.59 -0.10 12.57 16 11 O -0.56 -13.84 14.48 5.26 0.08 -13.77 16 12 N -0.70 -15.74 5.07 -56.06 -0.28 -16.03 16 13 C 0.27 7.03 2.56 -69.08 -0.18 6.85 16 14 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 15 C -0.15 -3.79 9.26 37.15 0.34 -3.45 16 16 C -0.53 -14.48 8.73 -34.44 -0.30 -14.78 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 19 N -0.88 -25.36 11.32 55.43 0.63 -24.73 16 20 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 C 0.10 1.67 6.86 -81.51 -0.56 1.11 16 25 C -0.09 -1.28 9.01 36.01 0.32 -0.95 16 26 N -0.36 -4.50 11.85 31.24 0.37 -4.13 16 27 O 0.11 1.13 11.19 17.08 0.19 1.32 16 28 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.15 8.14 -51.92 -0.42 -0.28 16 30 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.64 7.91 -51.93 -0.41 0.22 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.15 2.06 7.69 -52.49 -0.40 1.65 16 36 H 0.39 7.71 7.65 -40.82 -0.31 7.40 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.49 6.07 -51.92 -0.32 2.17 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.69 7.42 -51.93 -0.39 0.30 16 43 H 0.11 1.78 6.47 -51.93 -0.34 1.45 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -33.71 365.00 -7.70 -41.41 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.90 Total: 5.67 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.10 Total: -5.49 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.56 Total: -50.64 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.27 Total: -12.44 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.71 -7.70 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194652270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.570 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds