Wall clock time and date at job start Tue Mar 31 2020 11:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35277 * 126.70466 * 2 1 4 4 C 1.41958 * 103.95770 * 179.97438 * 3 2 1 5 5 N 1.39873 * 126.88806 * 180.02562 * 4 3 2 6 6 C 1.36740 * 124.95387 * 226.96459 * 5 4 3 7 7 C 1.50699 * 125.55841 * 0.03196 * 6 5 4 8 8 C 1.34412 * 108.87460 * 179.97438 * 6 5 4 9 9 C 1.46724 * 106.51725 * 359.97438 * 8 6 5 10 10 C 1.47265 * 126.88754 * 179.97438 * 9 8 6 11 11 O 1.21624 * 119.99927 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99862 * 0.03186 * 10 9 8 13 13 C 1.46497 * 119.99521 * 179.72514 * 12 10 9 14 14 H 1.08999 * 109.47120 * 324.99410 * 13 12 10 15 15 C 1.52992 * 109.47358 * 84.99888 * 13 12 10 16 16 C 1.50709 * 109.46948 * 204.99961 * 13 12 10 17 17 H 1.08003 * 119.99365 * 359.97438 * 16 13 12 18 18 C 1.37868 * 120.00101 * 179.97438 * 16 13 12 19 19 N 1.31513 * 120.00097 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00075 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47022 * 60.00063 * 20 18 16 22 22 H 1.48496 * 109.47420 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47295 * 300.00011 * 20 18 16 24 24 C 1.35510 * 124.94791 * 47.22748 * 5 4 3 25 25 C 1.50703 * 125.86047 * 0.03034 * 24 5 4 26 26 N 1.30662 * 106.22820 * 0.25757 * 4 3 2 27 27 O 1.20912 * 111.49312 * 359.53827 * 26 4 3 28 28 H 1.08997 * 109.47510 * 90.00088 * 1 2 3 29 29 H 1.09008 * 109.47268 * 210.00484 * 1 2 3 30 30 H 1.09005 * 109.47284 * 330.00153 * 1 2 3 31 31 H 1.08005 * 128.01971 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47268 * 275.15068 * 7 6 5 33 33 H 1.09002 * 109.47401 * 35.15157 * 7 6 5 34 34 H 1.08996 * 109.46932 * 155.14836 * 7 6 5 35 35 H 1.08002 * 126.73907 * 179.97438 * 8 6 5 36 36 H 0.97003 * 120.00057 * 359.97438 * 12 10 9 37 37 H 1.08998 * 109.47749 * 299.99613 * 15 13 12 38 38 H 1.08999 * 109.47396 * 59.99690 * 15 13 12 39 39 H 1.09008 * 109.47231 * 179.97438 * 15 13 12 40 40 H 0.97006 * 120.00163 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.47038 * 270.16619 * 25 24 5 42 42 H 1.08998 * 109.46585 * 30.16709 * 25 24 5 43 43 H 1.08996 * 109.46895 * 150.16469 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6247 0.5357 0.0006 5 7 4.8316 1.2427 0.0014 6 6 5.8946 0.9789 -0.8173 7 6 5.9512 -0.1112 -1.8563 8 6 6.8801 1.8513 -0.5449 9 6 6.3827 2.7214 0.5267 10 6 7.1025 3.8355 1.1665 11 8 6.5671 4.4782 2.0494 12 7 8.3545 4.1431 0.7735 13 6 9.0682 5.2552 1.4059 14 1 8.3614 6.0478 1.6514 15 6 9.7478 4.7635 2.6853 16 6 10.1103 5.7880 0.4564 17 1 10.2293 5.3423 -0.5202 18 6 10.9117 6.8442 0.8345 19 7 10.7672 7.3865 2.0238 20 14 12.2039 7.5041 -0.3421 21 1 11.5447 7.9807 -1.5845 22 1 12.9273 8.6315 0.2987 23 1 13.1672 6.4243 -0.6757 24 6 5.1196 2.2858 0.8170 25 6 4.2032 2.8688 1.8618 26 7 3.4764 -0.7625 -0.0047 27 8 2.3083 -1.0750 0.0007 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 2.0310 2.1264 -0.0004 32 1 6.2567 -1.0459 -1.3860 33 1 4.9663 -0.2358 -2.3063 34 1 6.6716 0.1597 -2.6281 35 1 7.8481 1.9019 -1.0213 36 1 8.7817 3.6303 0.0695 37 1 8.9942 4.3782 3.3721 38 1 10.4547 3.9709 2.4398 39 1 10.2793 5.5909 3.1556 40 1 11.3308 8.1300 2.2897 41 1 3.5988 3.6583 1.4152 42 1 3.5505 2.0867 2.2496 43 1 4.7977 3.2829 2.6761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194652270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:39 Heat of formation + Delta-G solvation = 48.088248 kcal Electronic energy + Delta-G solvation = -26076.073867 eV Core-core repulsion = 22317.699067 eV Total energy + Delta-G solvation = -3758.374801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.27846 -42.67160 -40.12580 -36.68755 -35.83118 -34.60054 -34.30956 -33.73142 -32.04334 -30.71678 -30.03467 -28.76466 -27.33326 -26.19373 -25.05345 -23.92950 -23.03476 -22.13373 -20.79162 -19.83201 -18.98008 -18.66490 -18.30016 -17.84802 -17.07385 -16.79985 -16.49141 -16.00859 -15.41669 -15.29034 -14.98360 -14.69937 -14.46133 -14.43138 -14.21499 -14.13363 -13.97932 -13.72826 -13.60835 -13.44161 -13.27919 -13.23460 -12.97645 -12.84060 -12.71079 -12.56506 -12.34215 -12.25353 -12.13448 -11.73445 -11.10044 -10.76532 -10.55733 -10.51049 -9.90420 -9.61027 -9.15786 -8.15639 -6.33085 0.05252 0.50539 0.92336 1.13513 1.35310 1.45620 1.48278 1.55994 2.03314 2.38673 2.58883 2.77381 3.13706 3.14759 3.28987 3.67681 3.79151 3.91680 4.05311 4.11727 4.23389 4.35568 4.51314 4.56690 4.60862 4.68604 4.72262 4.75911 4.76390 4.84159 4.91110 4.92731 4.94099 5.10645 5.16215 5.22774 5.45591 5.60588 5.63764 5.71484 5.80621 5.94976 6.10524 6.11946 6.73836 6.99862 7.03664 7.33890 7.59595 8.90788 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.002703 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.081943 B =10357.946558 C =10917.103023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.007 3.993 3 C -0.237 4.237 4 C 0.204 3.796 5 N -0.375 5.375 6 C 0.020 3.980 7 C -0.074 4.074 8 C -0.162 4.162 9 C -0.235 4.235 10 C 0.574 3.426 11 O -0.598 6.598 12 N -0.699 5.699 13 C 0.274 3.726 14 H 0.001 0.999 15 C -0.133 4.133 16 C -0.548 4.548 17 H 0.072 0.928 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.974 3.026 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.264 1.264 24 C 0.106 3.894 25 C -0.085 4.085 26 N -0.380 5.380 27 O 0.118 5.882 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.195 0.805 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.170 0.830 36 H 0.402 0.598 37 H 0.011 0.989 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.266 0.734 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.280 -17.770 -8.246 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 C -0.260 4.260 4 C -0.041 4.041 5 N -0.055 5.055 6 C -0.085 4.085 7 C -0.131 4.131 8 C -0.186 4.186 9 C -0.245 4.245 10 C 0.363 3.637 11 O -0.482 6.482 12 N -0.347 5.347 13 C 0.170 3.830 14 H 0.018 0.982 15 C -0.192 4.192 16 C -0.586 4.586 17 H 0.090 0.910 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.007 4.007 25 C -0.142 4.142 26 N -0.083 5.083 27 O 0.048 5.952 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.212 0.788 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.188 0.812 36 H 0.237 0.763 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.928 -18.381 -7.546 28.858 hybrid contribution 0.997 1.262 -0.361 1.648 sum -19.931 -17.120 -7.907 27.438 Atomic orbital electron populations 1.20722 0.79544 1.06764 1.06176 1.25172 0.98100 0.83914 0.98434 1.22627 0.88465 1.03237 1.11703 1.20617 0.87521 0.89045 1.06940 1.40149 1.10144 1.25179 1.30019 1.20835 0.86836 1.02295 0.98528 1.20371 1.03395 0.94231 0.95076 1.22089 1.00225 0.96589 0.99664 1.20281 0.96167 1.02590 1.05449 1.17718 0.81497 0.82724 0.81716 1.90649 1.68890 1.54639 1.33975 1.46058 1.14566 1.34425 1.39643 1.18343 0.89968 0.83500 0.91165 0.98155 1.21902 0.98643 1.00436 0.98208 1.21508 1.18434 1.17266 1.01379 0.91015 1.25809 0.99409 0.96339 0.97013 1.70049 1.40453 1.24408 1.20649 0.85373 0.78465 0.77899 0.78446 1.19554 1.21020 1.18897 1.20668 0.95618 0.89547 0.94844 1.20545 0.97515 1.00587 0.95523 1.74134 0.98590 1.14306 1.21299 1.84859 1.10065 1.33417 1.66841 0.87049 0.87867 0.86817 0.78776 0.90470 0.92035 0.87519 0.81214 0.76339 0.97006 0.94345 0.91230 0.92503 0.88887 0.90176 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 10.45 71.24 0.74 0.64 16 2 C 0.01 0.09 7.48 25.00 0.19 0.27 16 3 C -0.24 -3.89 10.03 22.51 0.23 -3.67 16 4 C 0.20 4.92 6.53 133.98 0.87 5.80 16 5 N -0.38 -10.86 2.93 -326.35 -0.95 -11.81 16 6 C 0.02 0.55 6.82 40.92 0.28 0.83 16 7 C -0.07 -1.49 9.78 71.24 0.70 -0.79 16 8 C -0.16 -4.98 10.43 23.61 0.25 -4.73 16 9 C -0.24 -8.80 6.29 -19.04 -0.12 -8.92 16 10 C 0.57 26.34 7.77 86.62 0.67 27.01 16 11 O -0.60 -31.19 14.48 -4.11 -0.06 -31.25 16 12 N -0.70 -32.41 5.07 -449.52 -2.28 -34.69 16 13 C 0.27 15.02 2.56 44.25 0.11 15.13 16 14 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 15 C -0.13 -7.14 9.26 71.98 0.67 -6.47 16 16 C -0.55 -30.19 8.73 25.60 0.22 -29.97 16 17 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 18 C 0.01 0.79 5.30 84.65 0.45 1.24 16 19 N -0.92 -53.83 11.32 21.44 0.24 -53.59 16 20 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 24 C 0.11 3.50 6.86 41.64 0.29 3.78 16 25 C -0.08 -2.41 9.01 71.24 0.64 -1.77 16 26 N -0.38 -9.00 11.85 -56.20 -0.67 -9.67 16 27 O 0.12 2.08 11.19 71.29 0.80 2.87 16 28 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.10 -0.09 8.14 -2.38 -0.02 -0.11 16 30 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 31 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.22 7.91 -2.39 -0.02 1.20 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.17 4.41 7.69 -2.91 -0.02 4.39 16 36 H 0.40 16.18 7.65 -92.71 -0.71 15.47 16 37 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 4.01 6.07 -2.38 -0.01 3.99 16 40 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 41 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.08 1.86 7.42 -2.39 -0.02 1.84 16 43 H 0.08 2.79 6.47 -2.39 -0.02 2.78 16 Total: -1.00 -76.12 365.00 5.63 -70.49 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.33 Total: 24.24 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 6.19 Total: -1.60 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -3.66 Total: -109.75 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: 0.74 Total: -28.38 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -76.12 5.63 -70.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194652270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.582 kcal (2) G-P(sol) polarization free energy of solvation -76.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds