Wall clock time and date at job start Tue Mar 31 2020 11:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35278 * 126.69976 * 2 1 4 4 C 1.41967 * 103.95489 * 180.02562 * 3 2 1 5 5 N 1.39869 * 126.88523 * 180.02562 * 4 3 2 6 6 C 1.36744 * 124.95452 * 132.72371 * 5 4 3 7 7 C 1.50698 * 125.55645 * 0.25760 * 6 5 4 8 8 C 1.34410 * 108.87606 * 180.25999 * 6 5 4 9 9 C 1.46721 * 106.51588 * 0.02562 * 8 6 5 10 10 C 1.47268 * 126.88432 * 180.02562 * 9 8 6 11 11 O 1.21633 * 119.99851 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00223 * 359.96743 * 10 9 8 13 13 C 1.46504 * 119.99974 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46936 * 35.00296 * 13 12 10 15 15 C 1.53002 * 109.47287 * 275.00138 * 13 12 10 16 16 C 1.50703 * 109.46906 * 155.00132 * 13 12 10 17 17 H 1.08000 * 119.99820 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99768 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00134 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99690 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47386 * 90.00013 * 20 18 16 22 22 H 1.48504 * 109.47018 * 209.99505 * 20 18 16 23 23 H 1.48494 * 109.47563 * 329.99785 * 20 18 16 24 24 C 1.35514 * 124.95215 * 313.01831 * 5 4 3 25 25 C 1.50699 * 125.85457 * 359.70627 * 24 5 4 26 26 N 1.30668 * 106.22759 * 0.25896 * 4 3 2 27 27 O 1.20916 * 111.49113 * 359.54016 * 26 4 3 28 28 H 1.08999 * 109.47441 * 89.99789 * 1 2 3 29 29 H 1.09008 * 109.46714 * 210.00189 * 1 2 3 30 30 H 1.08997 * 109.47328 * 329.99326 * 1 2 3 31 31 H 1.07995 * 128.02430 * 0.03801 * 3 2 1 32 32 H 1.09001 * 109.47046 * 84.83238 * 7 6 5 33 33 H 1.09003 * 109.46904 * 204.82752 * 7 6 5 34 34 H 1.09001 * 109.47769 * 324.83047 * 7 6 5 35 35 H 1.08007 * 126.73728 * 180.02562 * 8 6 5 36 36 H 0.97004 * 120.00113 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.46843 * 60.00414 * 15 13 12 38 38 H 1.08996 * 109.47019 * 179.97438 * 15 13 12 39 39 H 1.08995 * 109.47291 * 300.00361 * 15 13 12 40 40 H 0.97007 * 120.00118 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.47178 * 89.99499 * 25 24 5 42 42 H 1.08995 * 109.47517 * 209.99533 * 25 24 5 43 43 H 1.09003 * 109.47039 * 329.99654 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0846 0.0000 4 6 3.6248 0.5357 -0.0006 5 7 4.8315 1.2429 -0.0004 6 6 5.8920 0.9824 0.8226 7 6 5.9478 -0.1076 1.8618 8 6 6.8765 1.8571 0.5535 9 6 6.3810 2.7251 -0.5206 10 6 7.1005 3.8407 -1.1584 11 8 6.5668 4.4814 -2.0439 12 7 8.3501 4.1516 -0.7608 13 6 9.0660 5.2610 -1.3957 14 1 8.3596 6.0515 -1.6493 15 6 9.7527 4.7628 -2.6690 16 6 10.1027 5.8000 -0.4439 17 1 10.2171 5.3599 0.5357 18 6 10.9050 6.8550 -0.8238 19 7 10.7660 7.3905 -2.0168 20 14 12.1905 7.5226 0.3558 21 1 13.4714 6.7990 0.1534 22 1 12.3941 8.9709 0.0980 23 1 11.7280 7.3289 1.7535 24 6 5.1181 2.2897 -0.8118 25 6 4.2019 2.8738 -1.8561 26 7 3.4764 -0.7625 -0.0066 27 8 2.3084 -1.0749 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 2.0310 2.1264 0.0006 32 1 6.2578 -1.0414 1.3926 33 1 6.6646 0.1653 2.6364 34 1 4.9615 -0.2351 2.3080 35 1 7.8425 1.9104 1.0336 36 1 8.7758 3.6405 -0.0548 37 1 9.0028 4.3730 -3.3574 38 1 10.2849 5.5883 -3.1415 39 1 10.4589 3.9723 -2.4154 40 1 11.3308 8.1325 -2.2842 41 1 3.5964 3.6618 -1.4084 42 1 4.7963 3.2899 -2.6693 43 1 3.5500 2.0918 -2.2458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194652287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:42 Heat of formation + Delta-G solvation = 68.074018 kcal Electronic energy + Delta-G solvation = -26075.140624 eV Core-core repulsion = 22317.632471 eV Total energy + Delta-G solvation = -3757.508153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.46632 -41.48760 -38.35507 -34.95868 -34.69267 -33.93249 -32.70645 -32.25066 -30.77449 -29.28937 -28.55067 -28.30155 -25.20985 -24.86823 -24.07843 -22.80527 -21.81683 -20.42551 -19.09169 -18.85076 -18.12684 -17.54970 -16.96455 -16.43041 -15.42998 -15.17102 -15.06591 -14.51573 -14.25546 -14.14052 -13.82974 -13.71409 -13.63683 -13.21001 -13.17713 -13.00834 -12.83707 -12.52038 -12.40569 -12.29218 -12.26609 -11.62377 -11.55548 -11.38733 -11.04405 -10.90677 -10.79639 -10.63142 -10.25183 -10.16482 -9.87659 -8.96952 -8.94912 -8.60897 -8.47920 -8.03448 -7.69719 -6.05889 -4.14368 0.88206 1.36929 2.10674 2.20252 2.47421 2.63403 3.28643 3.35183 3.37870 3.92030 4.15394 4.22417 4.29371 4.42852 4.52488 4.70820 4.78245 4.86103 4.87523 5.09578 5.11620 5.23819 5.26373 5.30526 5.44317 5.46968 5.53735 5.68418 5.72538 5.81195 5.90388 6.11647 6.36467 6.82652 6.91041 6.99473 7.07567 7.18459 7.24891 7.58125 7.68297 7.76230 7.80137 8.01754 8.23160 8.80993 8.88844 9.28916 9.53749 11.00198 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027318 B = 0.002702 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.737820 B =10360.340706 C =10915.913130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.017 4.017 3 C -0.225 4.225 4 C 0.235 3.765 5 N -0.377 5.377 6 C 0.019 3.981 7 C -0.079 4.079 8 C -0.153 4.153 9 C -0.198 4.198 10 C 0.577 3.423 11 O -0.561 6.561 12 N -0.701 5.701 13 C 0.266 3.734 14 H 0.049 0.951 15 C -0.147 4.147 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.102 3.898 25 C -0.090 4.090 26 N -0.357 5.357 27 O 0.115 5.885 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.180 0.820 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.154 0.846 36 H 0.388 0.612 37 H 0.015 0.985 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.263 0.737 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 -16.137 6.251 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.248 4.248 4 C -0.012 4.012 5 N -0.058 5.058 6 C -0.085 4.085 7 C -0.137 4.137 8 C -0.177 4.177 9 C -0.207 4.207 10 C 0.363 3.637 11 O -0.443 6.443 12 N -0.348 5.348 13 C 0.164 3.836 14 H 0.067 0.933 15 C -0.205 4.205 16 C -0.569 4.569 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.009 4.009 25 C -0.147 4.147 26 N -0.062 5.062 27 O 0.046 5.954 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.197 0.803 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.172 0.828 36 H 0.221 0.779 37 H 0.034 0.966 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.489 -16.704 5.507 26.252 hybrid contribution 0.770 0.853 0.993 1.519 sum -18.719 -15.851 6.501 25.375 Atomic orbital electron populations 1.20409 0.83186 1.05059 1.04583 1.24388 0.96597 0.85536 1.01542 1.22385 0.89779 1.01885 1.10790 1.20306 0.87396 0.88495 1.04956 1.40082 1.09304 1.25635 1.30812 1.20289 0.87552 1.02259 0.98408 1.20294 1.02538 0.95296 0.95536 1.21914 0.99049 0.96755 0.99964 1.20578 0.94894 1.02142 1.03133 1.17223 0.81872 0.82308 0.82319 1.90684 1.68216 1.53200 1.32155 1.46307 1.14345 1.35187 1.38943 1.18728 0.90849 0.83460 0.90569 0.93312 1.22077 0.98903 1.01027 0.98536 1.21239 1.18390 1.16751 1.00561 0.92095 1.24882 0.97265 0.96229 0.95376 1.69907 1.39374 1.24296 1.18617 0.86461 0.81516 0.78130 0.81056 1.20590 1.21122 1.19874 1.20466 0.96016 0.89363 0.95027 1.20584 0.97813 0.99598 0.96721 1.74147 0.97189 1.14287 1.20531 1.84893 1.10484 1.32575 1.67448 0.88909 0.89430 0.88634 0.80258 0.90897 0.89686 0.92336 0.82837 0.77907 0.96615 0.89217 0.95527 0.92660 0.90408 0.87373 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.45 36.01 0.38 0.17 16 2 C -0.02 -0.13 7.48 -35.36 -0.26 -0.39 16 3 C -0.23 -2.10 10.02 -39.21 -0.39 -2.50 16 4 C 0.24 3.01 6.52 -154.52 -1.01 2.00 16 5 N -0.38 -5.59 2.93 -54.17 -0.16 -5.75 16 6 C 0.02 0.28 6.82 -81.75 -0.56 -0.28 16 7 C -0.08 -0.88 9.80 36.00 0.35 -0.52 16 8 C -0.15 -2.37 10.43 -37.51 -0.39 -2.76 16 9 C -0.20 -3.62 6.29 -103.35 -0.65 -4.27 16 10 C 0.58 12.67 7.77 -12.59 -0.10 12.57 16 11 O -0.56 -13.85 14.47 5.25 0.08 -13.77 16 12 N -0.70 -15.74 5.06 -56.05 -0.28 -16.02 16 13 C 0.27 7.02 2.56 -69.08 -0.18 6.84 16 14 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 15 C -0.15 -3.79 9.26 37.16 0.34 -3.45 16 16 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 19 N -0.88 -25.35 11.32 55.43 0.63 -24.72 16 20 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.10 1.67 6.86 -81.51 -0.56 1.11 16 25 C -0.09 -1.28 9.01 36.01 0.32 -0.95 16 26 N -0.36 -4.51 11.88 31.24 0.37 -4.13 16 27 O 0.11 1.13 11.19 17.08 0.19 1.33 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.14 8.14 -51.92 -0.42 -0.28 16 30 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.63 7.91 -51.93 -0.41 0.22 16 35 H 0.15 2.06 7.69 -52.48 -0.40 1.65 16 36 H 0.39 7.71 7.65 -40.82 -0.31 7.40 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.11 1.79 6.46 -51.93 -0.34 1.45 16 43 H 0.06 0.69 7.41 -51.93 -0.38 0.30 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -33.74 365.02 -7.69 -41.43 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.90 Total: 5.64 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.10 Total: -5.48 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.56 Total: -50.63 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.27 Total: -12.45 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.74 -7.69 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194652287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.503 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds