Wall clock time and date at job start Tue Mar 31 2020 11:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35278 * 126.69976 * 2 1 4 4 C 1.41967 * 103.95489 * 180.02562 * 3 2 1 5 5 N 1.39869 * 126.88523 * 180.02562 * 4 3 2 6 6 C 1.36744 * 124.95452 * 132.72371 * 5 4 3 7 7 C 1.50698 * 125.55645 * 0.25760 * 6 5 4 8 8 C 1.34410 * 108.87606 * 180.25999 * 6 5 4 9 9 C 1.46721 * 106.51588 * 0.02562 * 8 6 5 10 10 C 1.47268 * 126.88432 * 180.02562 * 9 8 6 11 11 O 1.21633 * 119.99851 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00223 * 359.96743 * 10 9 8 13 13 C 1.46504 * 119.99974 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46936 * 35.00296 * 13 12 10 15 15 C 1.53002 * 109.47287 * 275.00138 * 13 12 10 16 16 C 1.50703 * 109.46906 * 155.00132 * 13 12 10 17 17 H 1.08000 * 119.99820 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99768 * 180.02562 * 16 13 12 19 19 N 1.31508 * 120.00134 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99690 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47386 * 90.00013 * 20 18 16 22 22 H 1.48504 * 109.47018 * 209.99505 * 20 18 16 23 23 H 1.48494 * 109.47563 * 329.99785 * 20 18 16 24 24 C 1.35514 * 124.95215 * 313.01831 * 5 4 3 25 25 C 1.50699 * 125.85457 * 359.70627 * 24 5 4 26 26 N 1.30668 * 106.22759 * 0.25896 * 4 3 2 27 27 O 1.20916 * 111.49113 * 359.54016 * 26 4 3 28 28 H 1.08999 * 109.47441 * 89.99789 * 1 2 3 29 29 H 1.09008 * 109.46714 * 210.00189 * 1 2 3 30 30 H 1.08997 * 109.47328 * 329.99326 * 1 2 3 31 31 H 1.07995 * 128.02430 * 0.03801 * 3 2 1 32 32 H 1.09001 * 109.47046 * 84.83238 * 7 6 5 33 33 H 1.09003 * 109.46904 * 204.82752 * 7 6 5 34 34 H 1.09001 * 109.47769 * 324.83047 * 7 6 5 35 35 H 1.08007 * 126.73728 * 180.02562 * 8 6 5 36 36 H 0.97004 * 120.00113 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.46843 * 60.00414 * 15 13 12 38 38 H 1.08996 * 109.47019 * 179.97438 * 15 13 12 39 39 H 1.08995 * 109.47291 * 300.00361 * 15 13 12 40 40 H 0.97007 * 120.00118 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.47178 * 89.99499 * 25 24 5 42 42 H 1.08995 * 109.47517 * 209.99533 * 25 24 5 43 43 H 1.09003 * 109.47039 * 329.99654 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0846 0.0000 4 6 3.6248 0.5357 -0.0006 5 7 4.8315 1.2429 -0.0004 6 6 5.8920 0.9824 0.8226 7 6 5.9478 -0.1076 1.8618 8 6 6.8765 1.8571 0.5535 9 6 6.3810 2.7251 -0.5206 10 6 7.1005 3.8407 -1.1584 11 8 6.5668 4.4814 -2.0439 12 7 8.3501 4.1516 -0.7608 13 6 9.0660 5.2610 -1.3957 14 1 8.3596 6.0515 -1.6493 15 6 9.7527 4.7628 -2.6690 16 6 10.1027 5.8000 -0.4439 17 1 10.2171 5.3599 0.5357 18 6 10.9050 6.8550 -0.8238 19 7 10.7660 7.3905 -2.0168 20 14 12.1905 7.5226 0.3558 21 1 13.4714 6.7990 0.1534 22 1 12.3941 8.9709 0.0980 23 1 11.7280 7.3289 1.7535 24 6 5.1181 2.2897 -0.8118 25 6 4.2019 2.8738 -1.8561 26 7 3.4764 -0.7625 -0.0066 27 8 2.3084 -1.0749 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 2.0310 2.1264 0.0006 32 1 6.2578 -1.0414 1.3926 33 1 6.6646 0.1653 2.6364 34 1 4.9615 -0.2351 2.3080 35 1 7.8425 1.9104 1.0336 36 1 8.7758 3.6405 -0.0548 37 1 9.0028 4.3730 -3.3574 38 1 10.2849 5.5883 -3.1415 39 1 10.4589 3.9723 -2.4154 40 1 11.3308 8.1325 -2.2842 41 1 3.5964 3.6618 -1.4084 42 1 4.7963 3.2899 -2.6693 43 1 3.5500 2.0918 -2.2458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194652287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:41 Heat of formation + Delta-G solvation = 47.972926 kcal Electronic energy + Delta-G solvation = -26076.012272 eV Core-core repulsion = 22317.632471 eV Total energy + Delta-G solvation = -3758.379801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.27725 -42.67165 -40.12516 -36.68796 -35.83113 -34.59973 -34.31062 -33.73174 -32.04365 -30.71779 -30.03546 -28.76460 -27.33574 -26.19423 -25.05359 -23.93081 -23.03264 -22.13576 -20.79374 -19.83535 -18.97336 -18.66285 -18.30413 -17.85014 -17.07674 -16.80768 -16.48788 -16.00467 -15.41905 -15.28539 -14.98408 -14.69989 -14.46399 -14.43359 -14.21501 -14.13483 -13.97875 -13.73106 -13.61343 -13.43829 -13.28063 -13.23637 -12.98397 -12.84165 -12.69906 -12.56214 -12.34234 -12.27150 -12.12443 -11.73138 -11.08703 -10.76767 -10.56520 -10.51212 -9.90554 -9.61146 -9.15819 -8.15929 -6.33191 0.05223 0.50784 0.92190 1.13703 1.34993 1.45600 1.46622 1.57395 2.03270 2.38551 2.58817 2.77309 3.13826 3.14731 3.28860 3.67674 3.79171 3.91649 4.05313 4.11718 4.23332 4.35596 4.51256 4.56640 4.60898 4.68582 4.72242 4.75862 4.76351 4.84139 4.91116 4.92754 4.93868 5.10471 5.16180 5.22739 5.45688 5.60586 5.63857 5.71302 5.80669 5.94995 6.10505 6.11884 6.74001 6.99829 7.03577 7.33826 7.59550 8.90720 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027318 B = 0.002702 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.737820 B =10360.340706 C =10915.913130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.007 3.993 3 C -0.237 4.237 4 C 0.204 3.796 5 N -0.375 5.375 6 C 0.020 3.980 7 C -0.074 4.074 8 C -0.162 4.162 9 C -0.235 4.235 10 C 0.574 3.426 11 O -0.598 6.598 12 N -0.699 5.699 13 C 0.273 3.727 14 H 0.001 0.999 15 C -0.133 4.133 16 C -0.547 4.547 17 H 0.072 0.928 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.974 3.026 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.265 1.265 24 C 0.106 3.894 25 C -0.085 4.085 26 N -0.380 5.380 27 O 0.118 5.882 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.195 0.805 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.171 0.829 36 H 0.402 0.598 37 H 0.011 0.989 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.266 0.734 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.292 -17.776 8.255 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 C -0.260 4.260 4 C -0.041 4.041 5 N -0.055 5.055 6 C -0.085 4.085 7 C -0.131 4.131 8 C -0.186 4.186 9 C -0.245 4.245 10 C 0.363 3.637 11 O -0.482 6.482 12 N -0.347 5.347 13 C 0.170 3.830 14 H 0.019 0.981 15 C -0.192 4.192 16 C -0.585 4.585 17 H 0.090 0.910 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.189 1.189 24 C -0.007 4.007 25 C -0.142 4.142 26 N -0.083 5.083 27 O 0.048 5.952 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.212 0.788 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.188 0.812 36 H 0.237 0.763 37 H 0.030 0.970 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.942 -18.390 7.543 28.873 hybrid contribution 1.006 1.264 0.341 1.651 sum -19.936 -17.127 7.884 27.440 Atomic orbital electron populations 1.20720 0.79542 1.06792 1.06139 1.25173 0.98101 0.83924 0.98433 1.22632 0.88477 1.03235 1.11689 1.20618 0.87511 0.89055 1.06940 1.40144 1.10263 1.25040 1.30057 1.20835 0.86953 1.02290 0.98381 1.20372 1.03395 0.94234 0.95084 1.22089 1.00262 0.96622 0.99601 1.20278 0.96169 1.02592 1.05436 1.17719 0.81494 0.82710 0.81732 1.90651 1.68896 1.54771 1.33850 1.46056 1.14719 1.34557 1.39349 1.18351 0.89938 0.83562 0.91157 0.98127 1.21904 0.98668 1.00411 0.98217 1.21533 1.18575 1.17294 1.01069 0.91024 1.25811 0.99374 0.96369 0.97039 1.70055 1.40336 1.24704 1.20476 0.85317 0.78702 0.77200 0.78937 1.19606 1.21060 1.18879 1.20666 0.95616 0.89448 0.94961 1.20544 0.97517 1.00575 0.95541 1.74140 0.98590 1.14346 1.21252 1.84860 1.10060 1.33414 1.66837 0.87187 0.87767 0.86793 0.78780 0.90473 0.87507 0.92024 0.81208 0.76337 0.97017 0.91234 0.94328 0.92513 0.88879 0.90102 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 10.45 71.24 0.74 0.64 16 2 C 0.01 0.08 7.48 25.00 0.19 0.27 16 3 C -0.24 -3.89 10.02 22.51 0.23 -3.67 16 4 C 0.20 4.92 6.52 133.98 0.87 5.80 16 5 N -0.38 -10.86 2.93 -326.34 -0.95 -11.81 16 6 C 0.02 0.56 6.82 40.92 0.28 0.84 16 7 C -0.07 -1.49 9.80 71.24 0.70 -0.79 16 8 C -0.16 -4.98 10.43 23.61 0.25 -4.73 16 9 C -0.23 -8.79 6.29 -19.04 -0.12 -8.91 16 10 C 0.57 26.34 7.77 86.62 0.67 27.01 16 11 O -0.60 -31.20 14.47 -4.13 -0.06 -31.26 16 12 N -0.70 -32.40 5.06 -449.50 -2.28 -34.68 16 13 C 0.27 15.00 2.56 44.25 0.11 15.11 16 14 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 15 C -0.13 -7.14 9.26 71.98 0.67 -6.47 16 16 C -0.55 -30.12 8.73 25.60 0.22 -29.90 16 17 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 18 C 0.01 0.77 5.30 84.66 0.45 1.22 16 19 N -0.92 -53.81 11.32 21.45 0.24 -53.57 16 20 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 24 C 0.11 3.49 6.86 41.63 0.29 3.78 16 25 C -0.08 -2.42 9.01 71.24 0.64 -1.78 16 26 N -0.38 -9.01 11.88 -56.19 -0.67 -9.67 16 27 O 0.12 2.08 11.19 71.31 0.80 2.88 16 28 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.10 -0.12 8.14 -2.38 -0.02 -0.14 16 30 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.22 7.91 -2.39 -0.02 1.20 16 35 H 0.17 4.41 7.69 -2.91 -0.02 4.39 16 36 H 0.40 16.17 7.65 -92.70 -0.71 15.46 16 37 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 39 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 41 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.08 2.80 6.46 -2.39 -0.02 2.78 16 43 H 0.08 1.86 7.41 -2.39 -0.02 1.84 16 Total: -1.00 -76.16 365.02 5.63 -70.53 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.33 Total: 24.14 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 6.19 Total: -1.57 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -3.66 Total: -109.74 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: 0.74 Total: -28.39 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -76.16 5.63 -70.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194652287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.505 kcal (2) G-P(sol) polarization free energy of solvation -76.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds