Wall clock time and date at job start Tue Mar 31 2020 11:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29817 * 126.33693 * 2 1 4 4 O 1.41322 * 109.72706 * 179.97438 * 3 2 1 5 5 C 1.34838 * 109.42106 * 0.02562 * 4 3 2 6 6 N 1.32455 * 133.09537 * 179.97438 * 5 4 3 7 7 C 1.31565 * 122.02606 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.17083 * 179.97438 * 7 6 5 9 9 C 1.53009 * 109.46669 * 95.00146 * 8 7 6 10 10 C 1.52991 * 109.47235 * 214.99804 * 8 7 6 11 11 C 1.38591 * 121.65313 * 359.67679 * 7 6 5 12 12 C 1.39439 * 119.20471 * 0.61810 * 11 7 6 13 13 C 1.48002 * 121.10698 * 179.69187 * 12 11 7 14 14 O 1.21525 * 120.00148 * 172.65036 * 13 12 11 15 15 N 1.34783 * 119.99790 * 352.65387 * 13 12 11 16 16 C 1.46502 * 119.99826 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.47228 * 324.99967 * 16 15 13 18 18 C 1.53005 * 109.46861 * 84.99851 * 16 15 13 19 19 C 1.50694 * 109.47177 * 205.00044 * 16 15 13 20 20 H 1.08001 * 119.99960 * 0.02562 * 19 16 15 21 21 C 1.37882 * 120.00295 * 180.02562 * 19 16 15 22 22 N 1.31515 * 119.99728 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 120.00109 * 179.97438 * 21 19 16 24 24 H 1.48505 * 109.47017 * 90.00289 * 23 21 19 25 25 H 1.48500 * 109.46880 * 210.00066 * 23 21 19 26 26 H 1.48502 * 109.47329 * 330.00045 * 23 21 19 27 27 C 1.40518 * 106.86191 * 359.97438 * 5 4 3 28 28 H 1.09001 * 109.47323 * 260.29584 * 1 2 3 29 29 H 1.09007 * 109.47353 * 20.29603 * 1 2 3 30 30 H 1.09000 * 109.47699 * 140.29091 * 1 2 3 31 31 H 1.09000 * 109.47052 * 335.00511 * 8 7 6 32 32 H 1.09000 * 109.47150 * 59.99832 * 9 8 7 33 33 H 1.09004 * 109.46599 * 179.97438 * 9 8 7 34 34 H 1.08995 * 109.46973 * 299.99947 * 9 8 7 35 35 H 1.09004 * 109.47350 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.47678 * 300.00324 * 10 8 7 37 37 H 1.09009 * 109.47065 * 60.00443 * 10 8 7 38 38 H 1.08001 * 120.40019 * 180.31094 * 11 7 6 39 39 H 0.97001 * 119.99913 * 0.02562 * 15 13 12 40 40 H 1.09007 * 109.47014 * 179.97438 * 18 16 15 41 41 H 1.08998 * 109.46623 * 60.00220 * 18 16 15 42 42 H 1.08996 * 109.47505 * 299.99778 * 18 16 15 43 43 H 0.97000 * 120.00333 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2761 1.0457 0.0000 4 8 3.6304 0.6418 0.0006 5 6 3.6965 -0.7050 0.0004 6 7 4.7069 -1.5614 0.0003 7 6 4.5180 -2.8634 -0.0004 8 6 5.7147 -3.7794 -0.0010 9 6 6.0433 -4.1899 1.4359 10 6 5.4014 -5.0272 -0.8289 11 6 3.2460 -3.4137 0.0056 12 6 2.1383 -2.5669 -0.0006 13 6 0.7612 -3.1092 -0.0014 14 8 -0.1870 -2.3601 0.1278 15 7 0.5587 -4.4339 -0.1454 16 6 -0.8044 -4.9708 -0.1456 17 1 -1.4221 -4.3943 0.5430 18 6 -1.3893 -4.8767 -1.5563 19 6 -0.7764 -6.4127 0.2914 20 1 0.1627 -6.8821 0.5445 21 6 -1.9498 -7.1327 0.3683 22 7 -3.0935 -6.5609 0.0605 23 14 -1.9150 -8.9203 0.9094 24 1 -2.0642 -8.9937 2.3851 25 1 -3.0311 -9.6552 0.2618 26 1 -0.6221 -9.5329 0.5115 27 6 2.3733 -1.1781 0.0003 28 1 -0.3634 -0.1732 1.0130 29 1 -0.3634 0.9639 -0.3565 30 1 -0.3634 -0.7905 -0.6565 31 1 6.5692 -3.2603 -0.4350 32 1 5.1887 -4.7089 1.8700 33 1 6.9087 -4.8528 1.4354 34 1 6.2665 -3.3009 2.0257 35 1 6.2672 -5.6895 -0.8298 36 1 4.5469 -5.5462 -0.3949 37 1 5.1673 -4.7347 -1.8526 38 1 3.1143 -4.4857 0.0100 39 1 1.3156 -5.0319 -0.2481 40 1 -2.4033 -5.2766 -1.5566 41 1 -0.7715 -5.4532 -2.2449 42 1 -1.4096 -3.8338 -1.8725 43 1 -3.9190 -7.0673 0.1149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194652747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:28 Heat of formation + Delta-G solvation = 20.952257 kcal Electronic energy + Delta-G solvation = -26810.324631 eV Core-core repulsion = 23050.773125 eV Total energy + Delta-G solvation = -3759.551505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.33975 -41.01106 -40.16003 -36.95229 -36.13687 -35.81151 -34.64950 -33.51255 -30.98013 -30.54468 -29.73084 -28.03423 -27.31098 -26.19118 -25.30931 -23.67001 -22.17737 -21.46291 -21.01636 -19.33563 -19.09967 -18.63151 -17.87931 -17.72450 -17.04259 -16.55099 -16.12298 -15.90974 -15.60357 -15.28659 -14.92824 -14.76623 -14.68895 -14.44697 -14.27480 -14.18936 -13.80334 -13.50546 -13.31996 -13.00107 -12.89104 -12.82627 -12.74260 -12.53788 -12.41659 -12.26380 -12.23018 -12.09063 -12.02637 -11.82738 -11.25960 -11.08593 -10.72692 -10.61738 -10.47698 -10.16091 -9.82562 -8.14850 -6.31305 -1.06884 -0.40936 0.63471 0.83736 1.49113 1.50456 1.59709 1.67404 2.06093 2.41945 2.44755 2.53840 2.87769 3.13746 3.17124 3.21711 3.48279 3.71773 3.90391 4.07719 4.19714 4.27992 4.37244 4.43972 4.56422 4.63101 4.68178 4.80040 4.87206 4.92988 4.96792 5.03549 5.06683 5.10916 5.20535 5.24868 5.40699 5.45190 5.46025 5.61035 5.70206 5.81447 5.90039 6.11683 6.36743 6.72141 6.80083 7.25909 7.43475 8.91045 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012473 B = 0.004311 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.357575 B = 6493.967323 C = 8372.262240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.166 3.834 3 N -0.300 5.300 4 O -0.103 6.103 5 C 0.278 3.722 6 N -0.481 5.481 7 C 0.214 3.786 8 C -0.044 4.044 9 C -0.143 4.143 10 C -0.153 4.153 11 C -0.159 4.159 12 C 0.002 3.998 13 C 0.536 3.464 14 O -0.551 6.551 15 N -0.683 5.683 16 C 0.272 3.728 17 H 0.012 0.988 18 C -0.136 4.136 19 C -0.545 4.545 20 H 0.077 0.923 21 C 0.019 3.981 22 N -0.915 5.915 23 Si 0.966 3.034 24 H -0.280 1.280 25 H -0.289 1.289 26 H -0.257 1.257 27 C -0.228 4.228 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.185 0.815 39 H 0.406 0.594 40 H 0.067 0.933 41 H 0.040 0.960 42 H 0.018 0.982 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.973 1.745 -0.881 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.014 4.014 3 N -0.051 5.051 4 O -0.105 6.105 5 C 0.096 3.904 6 N -0.202 5.202 7 C 0.071 3.929 8 C -0.063 4.063 9 C -0.201 4.201 10 C -0.210 4.210 11 C -0.180 4.180 12 C -0.011 4.011 13 C 0.322 3.678 14 O -0.431 6.431 15 N -0.332 5.332 16 C 0.170 3.830 17 H 0.030 0.970 18 C -0.195 4.195 19 C -0.583 4.583 20 H 0.095 0.905 21 C -0.182 4.182 22 N -0.553 5.553 23 Si 0.792 3.208 24 H -0.206 1.206 25 H -0.214 1.214 26 H -0.181 1.181 27 C -0.235 4.235 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.202 0.798 39 H 0.242 0.758 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.060 3.977 -0.812 16.565 hybrid contribution -1.053 -1.598 0.247 1.929 sum 15.007 2.380 -0.565 15.205 Atomic orbital electron populations 1.20937 0.81946 1.04724 1.05976 1.24965 0.99520 0.88410 0.88478 1.80059 0.83726 1.17557 1.23762 1.89168 1.24226 1.15466 1.81642 1.20501 0.89642 0.86415 0.93872 1.66423 1.32649 1.03149 1.18002 1.22014 0.95882 0.87507 0.87527 1.20372 0.92701 0.93943 0.99282 1.21866 1.03361 1.01831 0.93008 1.22038 1.04005 0.95597 0.99359 1.22531 0.90797 1.02776 1.01858 1.20131 0.94844 0.91033 0.95095 1.18382 0.87929 0.83356 0.78137 1.90695 1.44172 1.57163 1.51102 1.46248 1.11340 1.05970 1.69623 1.18474 0.77769 0.93091 0.93697 0.97047 1.21923 1.02772 0.97313 0.97485 1.21518 0.94522 0.95739 1.46558 0.90461 1.25698 0.94915 1.02694 0.94864 1.70030 0.98685 1.38358 1.48244 0.85424 0.78237 0.79178 0.77989 1.20646 1.21443 1.18105 1.21415 0.93353 0.95063 1.13658 0.88584 0.89155 0.86893 0.87916 0.91813 0.88920 0.93301 0.89078 0.90984 0.92195 0.79843 0.75798 0.91384 0.94112 0.96341 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.30 8.53 71.23 0.61 -1.69 16 2 C 0.17 5.38 7.44 44.93 0.33 5.72 16 3 N -0.30 -10.11 12.81 -43.68 -0.56 -10.67 16 4 O -0.10 -3.59 12.06 29.77 0.36 -3.23 16 5 C 0.28 9.04 8.64 85.16 0.74 9.78 16 6 N -0.48 -13.68 10.25 -296.37 -3.04 -16.72 16 7 C 0.21 4.77 5.79 42.68 0.25 5.02 16 8 C -0.04 -0.63 3.21 -11.54 -0.04 -0.67 16 9 C -0.14 -1.79 9.18 71.99 0.66 -1.13 16 10 C -0.15 -1.62 8.61 71.98 0.62 -1.00 16 11 C -0.16 -3.65 8.64 22.64 0.20 -3.45 16 12 C 0.00 0.05 5.93 -19.76 -0.12 -0.06 16 13 C 0.54 19.11 7.74 86.83 0.67 19.78 16 14 O -0.55 -22.30 11.05 -3.80 -0.04 -22.35 16 15 N -0.68 -24.49 5.03 -448.83 -2.26 -26.74 16 16 C 0.27 12.51 2.56 44.24 0.11 12.63 16 17 H 0.01 0.63 7.58 -2.39 -0.02 0.61 16 18 C -0.14 -6.19 9.26 71.98 0.67 -5.52 16 19 C -0.55 -25.94 8.73 25.60 0.22 -25.71 16 20 H 0.08 3.36 7.74 -2.91 -0.02 3.34 16 21 C 0.02 0.93 5.30 84.66 0.45 1.38 16 22 N -0.91 -48.94 11.32 21.45 0.24 -48.70 16 23 Si 0.97 38.92 29.54 68.60 2.03 40.95 16 24 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 27 C -0.23 -7.45 6.15 -20.00 -0.12 -7.57 16 28 H 0.10 2.83 7.89 -2.39 -0.02 2.81 16 29 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.11 3.73 5.45 -10.01 -0.05 3.68 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.07 0.70 6.46 -2.39 -0.02 0.69 16 37 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.18 3.10 4.82 -2.91 -0.01 3.09 16 39 H 0.41 11.70 6.74 -92.71 -0.63 11.07 16 40 H 0.07 3.46 6.07 -2.38 -0.01 3.45 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -61.82 353.44 2.37 -59.45 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.39 Total: 20.51 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 5.25 Total: 7.50 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -5.61 Total: -102.83 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.32 Total: -25.58 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -61.82 2.37 -59.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194652747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.400 kcal (2) G-P(sol) polarization free energy of solvation -61.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds