Wall clock time and date at job start Tue Mar 31 2020 11:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00180 * 2 1 4 4 C 1.53001 * 109.47102 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47505 * 179.97438 * 4 3 2 6 6 C 1.36539 * 124.77430 * 90.01407 * 5 4 3 7 7 C 1.50696 * 125.38011 * 0.02562 * 6 5 4 8 8 C 1.34327 * 109.23812 * 180.02562 * 6 5 4 9 9 C 1.46972 * 106.38481 * 0.02562 * 8 6 5 10 10 C 1.41819 * 127.07913 * 179.97438 * 9 8 6 11 11 C 1.38178 * 120.00203 * 343.09537 * 10 9 8 12 12 C 1.43205 * 119.99846 * 353.17422 * 11 10 9 13 13 N 8.17684 * 115.01426 * 10.64475 * 2 1 3 14 14 C 1.46827 * 119.99855 * 173.17280 * 11 10 9 15 15 O 1.21713 * 119.99773 * 0.02562 * 14 11 10 16 16 N 1.34774 * 119.99399 * 179.72547 * 14 11 10 17 17 C 1.36880 * 119.99511 * 180.02562 * 16 14 11 18 18 H 1.08003 * 120.00393 * 359.97438 * 17 16 14 19 19 C 1.39017 * 119.99906 * 180.02562 * 17 16 14 20 20 N 1.31391 * 119.99927 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47188 * 60.00091 * 21 19 17 23 23 H 1.48504 * 109.47125 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47401 * 299.99788 * 21 19 17 25 25 C 1.34596 * 124.77249 * 270.29775 * 5 4 3 26 26 C 1.50694 * 125.95616 * 0.03844 * 25 5 4 27 27 H 1.09000 * 109.46903 * 59.99867 * 1 2 3 28 28 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47134 * 300.00563 * 1 2 3 30 30 H 1.08994 * 109.47223 * 59.99771 * 3 2 1 31 31 H 1.09000 * 109.46785 * 299.99330 * 3 2 1 32 32 H 1.08994 * 109.47542 * 59.99631 * 4 3 2 33 33 H 1.09005 * 109.46898 * 299.99372 * 4 3 2 34 34 H 1.08997 * 109.47123 * 269.96956 * 7 6 5 35 35 H 1.08996 * 109.47279 * 29.96978 * 7 6 5 36 36 H 1.09001 * 109.47312 * 149.97103 * 7 6 5 37 37 H 1.07999 * 126.80688 * 180.02562 * 8 6 5 38 38 H 1.08002 * 119.99663 * 163.10076 * 10 9 8 39 39 H 0.97002 * 120.00727 * 0.02562 * 16 14 11 40 40 H 0.97005 * 119.99757 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.46687 * 270.14814 * 26 25 5 42 42 H 1.09000 * 109.47190 * 30.14270 * 26 25 5 43 43 H 1.08997 * 109.47655 * 150.15000 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1315 2.5228 -0.0013 6 6 4.4490 3.2344 1.1199 7 6 4.2424 2.7671 2.5376 8 6 4.9748 4.4168 0.7596 9 6 4.9817 4.4369 -0.7100 10 6 5.4453 5.4823 -1.5486 11 6 5.6293 6.7512 -1.0336 12 6 5.2153 7.0476 0.3049 13 7 4.8865 7.2824 1.3687 14 6 6.2493 7.7956 -1.8586 15 8 6.6008 7.5438 -2.9963 16 7 6.4237 9.0348 -1.3580 17 6 7.0012 10.0086 -2.1272 18 1 7.3175 9.7839 -3.1352 19 6 7.1815 11.2866 -1.6108 20 7 6.7972 11.5598 -0.3844 21 14 7.9703 12.6153 -2.6603 22 1 7.1520 12.8335 -3.8801 23 1 8.0472 13.8789 -1.8839 24 1 9.3383 12.1902 -3.0515 25 6 4.4380 3.2261 -1.1072 26 6 4.2276 2.7747 -2.5294 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8568 0.6438 -0.8908 33 1 3.8574 0.6435 0.8892 34 1 3.2538 3.0726 2.8804 35 1 4.3209 1.6807 2.5772 36 1 5.0028 3.2100 3.1807 37 1 5.3233 5.1979 1.4191 38 1 5.6545 5.2866 -2.5900 39 1 6.1399 9.2366 -0.4526 40 1 6.9234 12.4515 -0.0240 41 1 5.1144 2.2450 -2.8774 42 1 3.3654 2.1094 -2.5757 43 1 4.0508 3.6432 -3.1639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195453871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:06 Heat of formation + Delta-G solvation = 6.629318 kcal Electronic energy + Delta-G solvation = -25442.036636 eV Core-core repulsion = 21681.864041 eV Total energy + Delta-G solvation = -3760.172595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51469 -38.49953 -38.28750 -36.19492 -34.48790 -33.86734 -33.13037 -31.77234 -31.25381 -29.39810 -28.78116 -26.71420 -25.79196 -24.54872 -23.60590 -22.43588 -20.43766 -20.06265 -18.70513 -18.00291 -17.11978 -16.86203 -16.54460 -16.13963 -15.69492 -14.82973 -14.75855 -14.72991 -14.38512 -13.93860 -13.82997 -13.57777 -13.49095 -13.37870 -13.00227 -12.87195 -12.82846 -12.65760 -12.47301 -12.31313 -12.03785 -11.98563 -11.88437 -11.68081 -11.58216 -11.35066 -11.10875 -11.07542 -10.46882 -10.27149 -10.25703 -9.82298 -9.52668 -8.51640 -8.27130 -8.05726 -7.37612 -6.50988 -3.83136 0.92698 2.16944 2.45556 3.11418 3.19885 3.23982 3.27863 3.31430 3.45208 3.67495 4.12319 4.21745 4.43271 4.52282 4.56377 4.63930 4.72991 4.75307 4.82397 4.85680 4.90530 4.98900 5.07385 5.15880 5.16644 5.18512 5.33029 5.39456 5.41875 5.59508 5.62484 5.72215 5.80152 5.91031 6.19113 6.30898 6.50672 6.67209 6.71349 6.97794 7.12511 7.21805 7.46360 7.98750 8.11665 8.52965 9.08456 9.45484 9.99797 10.65194 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.002529 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.872675 B =11068.076856 C =11597.404369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.046 3.954 4 C 0.103 3.897 5 N -0.433 5.433 6 C 0.006 3.994 7 C -0.083 4.083 8 C -0.166 4.166 9 C -0.170 4.170 10 C 0.050 3.950 11 C -0.111 4.111 12 C 0.270 3.730 13 N -0.444 5.444 14 C 0.481 3.519 15 O -0.596 6.596 16 N -0.542 5.542 17 C -0.293 4.293 18 H 0.111 0.889 19 C 0.022 3.978 20 N -0.886 5.886 21 Si 0.937 3.063 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.067 3.933 26 C -0.092 4.092 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.394 0.606 40 H 0.277 0.723 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 -23.035 2.009 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.032 4.032 4 C -0.020 4.020 5 N -0.111 5.111 6 C -0.101 4.101 7 C -0.141 4.141 8 C -0.190 4.190 9 C -0.176 4.176 10 C 0.023 3.977 11 C -0.119 4.119 12 C -0.042 4.042 13 N -0.122 5.122 14 C 0.269 3.731 15 O -0.484 6.484 16 N -0.175 5.175 17 C -0.423 4.423 18 H 0.129 0.871 19 C -0.182 4.182 20 N -0.525 5.525 21 Si 0.763 3.237 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.048 4.048 26 C -0.149 4.149 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.228 0.772 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.487 -23.052 3.066 25.510 hybrid contribution 0.060 1.046 -0.140 1.057 sum -10.427 -22.005 2.926 24.526 Atomic orbital electron populations 1.22789 0.80047 1.03093 1.00430 1.87790 1.20489 1.26962 1.95579 1.22830 0.93240 0.85348 1.01749 1.21542 0.92059 0.82607 1.05771 1.43268 1.48356 1.14020 1.05443 1.20140 1.07872 0.93772 0.88315 1.20324 1.02886 1.00838 0.90005 1.22411 1.05162 0.97303 0.94122 1.18637 1.11101 0.94972 0.92917 1.20977 0.89724 0.88463 0.98510 1.18600 1.09292 0.96598 0.87403 1.25878 0.93262 0.92195 0.92902 1.81188 1.10235 1.08996 1.11751 1.17053 0.86257 0.82430 0.87357 1.90639 1.57799 1.81299 1.18642 1.41932 1.51353 1.08300 1.15875 1.19823 1.34815 0.88831 0.98807 0.87132 1.25448 0.97557 0.98815 0.96404 1.69632 1.45273 1.22899 1.14654 0.85816 0.79699 0.78917 0.79252 1.19584 1.20861 1.19572 1.20852 1.03046 0.92181 0.88769 1.20467 1.02271 1.02802 0.89396 0.93706 0.89180 0.93793 0.92399 0.92313 0.88195 0.88264 0.91300 0.91930 0.90061 0.83289 0.83379 0.77247 0.91340 0.90181 0.91667 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.09 10.70 -35.23 -0.38 -3.46 16 3 C 0.05 0.35 6.26 37.16 0.23 0.58 16 4 C 0.10 0.79 5.73 -4.04 -0.02 0.76 16 5 N -0.43 -4.67 2.68 -107.50 -0.29 -4.96 16 6 C 0.01 0.07 6.84 -81.88 -0.56 -0.49 16 7 C -0.08 -0.77 10.04 36.00 0.36 -0.41 16 8 C -0.17 -2.57 9.37 -37.43 -0.35 -2.92 16 9 C -0.17 -2.56 5.91 -104.88 -0.62 -3.18 16 10 C 0.05 0.84 9.19 -38.24 -0.35 0.49 16 11 C -0.11 -2.26 5.90 -104.52 -0.62 -2.87 16 12 C 0.27 5.54 10.95 -22.41 -0.25 5.30 16 13 N -0.44 -9.31 17.26 41.91 0.72 -8.59 16 14 C 0.48 11.89 7.69 -12.79 -0.10 11.79 16 15 O -0.60 -15.94 15.88 5.18 0.08 -15.86 16 16 N -0.54 -14.49 5.23 -12.13 -0.06 -14.55 16 17 C -0.29 -8.21 9.68 -15.01 -0.15 -8.35 16 18 H 0.11 3.14 7.15 -52.48 -0.38 2.76 16 19 C 0.02 0.58 5.50 -17.45 -0.10 0.49 16 20 N -0.89 -24.64 13.05 55.50 0.72 -23.92 16 21 Si 0.94 20.82 29.55 -169.99 -5.02 15.79 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 C 0.07 0.79 6.95 -81.27 -0.56 0.23 16 26 C -0.09 -0.78 9.62 36.00 0.35 -0.43 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.10 0.65 7.51 -51.93 -0.39 0.26 16 33 H 0.10 0.67 6.88 -51.93 -0.36 0.31 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.15 2.55 5.17 -52.49 -0.27 2.28 16 38 H 0.15 2.31 7.49 -52.49 -0.39 1.92 16 39 H 0.39 10.54 6.76 -40.82 -0.28 10.27 16 40 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.44 7.57 -51.93 -0.39 0.05 16 43 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -33.03 373.01 -5.96 -38.99 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.74 Total: 8.68 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.62 Total: 2.26 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 1.10 Total: -52.02 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.29 Total: -19.32 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.03 -5.96 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195453871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.615 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds