Wall clock time and date at job start Tue Mar 31 2020 11:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00180 * 2 1 4 4 C 1.53001 * 109.47102 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47505 * 179.97438 * 4 3 2 6 6 C 1.36539 * 124.77430 * 90.01407 * 5 4 3 7 7 C 1.50696 * 125.38011 * 0.02562 * 6 5 4 8 8 C 1.34327 * 109.23812 * 180.02562 * 6 5 4 9 9 C 1.46972 * 106.38481 * 0.02562 * 8 6 5 10 10 C 1.41819 * 127.07913 * 179.97438 * 9 8 6 11 11 C 1.38178 * 120.00203 * 343.09537 * 10 9 8 12 12 C 1.43205 * 119.99846 * 353.17422 * 11 10 9 13 13 N 8.17684 * 115.01426 * 10.64475 * 2 1 3 14 14 C 1.46827 * 119.99855 * 173.17280 * 11 10 9 15 15 O 1.21713 * 119.99773 * 0.02562 * 14 11 10 16 16 N 1.34774 * 119.99399 * 179.72547 * 14 11 10 17 17 C 1.36880 * 119.99511 * 180.02562 * 16 14 11 18 18 H 1.08003 * 120.00393 * 359.97438 * 17 16 14 19 19 C 1.39017 * 119.99906 * 180.02562 * 17 16 14 20 20 N 1.31391 * 119.99927 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47188 * 60.00091 * 21 19 17 23 23 H 1.48504 * 109.47125 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47401 * 299.99788 * 21 19 17 25 25 C 1.34596 * 124.77249 * 270.29775 * 5 4 3 26 26 C 1.50694 * 125.95616 * 0.03844 * 25 5 4 27 27 H 1.09000 * 109.46903 * 59.99867 * 1 2 3 28 28 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47134 * 300.00563 * 1 2 3 30 30 H 1.08994 * 109.47223 * 59.99771 * 3 2 1 31 31 H 1.09000 * 109.46785 * 299.99330 * 3 2 1 32 32 H 1.08994 * 109.47542 * 59.99631 * 4 3 2 33 33 H 1.09005 * 109.46898 * 299.99372 * 4 3 2 34 34 H 1.08997 * 109.47123 * 269.96956 * 7 6 5 35 35 H 1.08996 * 109.47279 * 29.96978 * 7 6 5 36 36 H 1.09001 * 109.47312 * 149.97103 * 7 6 5 37 37 H 1.07999 * 126.80688 * 180.02562 * 8 6 5 38 38 H 1.08002 * 119.99663 * 163.10076 * 10 9 8 39 39 H 0.97002 * 120.00727 * 0.02562 * 16 14 11 40 40 H 0.97005 * 119.99757 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.46687 * 270.14814 * 26 25 5 42 42 H 1.09000 * 109.47190 * 30.14270 * 26 25 5 43 43 H 1.08997 * 109.47655 * 150.15000 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1315 2.5228 -0.0013 6 6 4.4490 3.2344 1.1199 7 6 4.2424 2.7671 2.5376 8 6 4.9748 4.4168 0.7596 9 6 4.9817 4.4369 -0.7100 10 6 5.4453 5.4823 -1.5486 11 6 5.6293 6.7512 -1.0336 12 6 5.2153 7.0476 0.3049 13 7 4.8865 7.2824 1.3687 14 6 6.2493 7.7956 -1.8586 15 8 6.6008 7.5438 -2.9963 16 7 6.4237 9.0348 -1.3580 17 6 7.0012 10.0086 -2.1272 18 1 7.3175 9.7839 -3.1352 19 6 7.1815 11.2866 -1.6108 20 7 6.7972 11.5598 -0.3844 21 14 7.9703 12.6153 -2.6603 22 1 7.1520 12.8335 -3.8801 23 1 8.0472 13.8789 -1.8839 24 1 9.3383 12.1902 -3.0515 25 6 4.4380 3.2261 -1.1072 26 6 4.2276 2.7747 -2.5294 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8568 0.6438 -0.8908 33 1 3.8574 0.6435 0.8892 34 1 3.2538 3.0726 2.8804 35 1 4.3209 1.6807 2.5772 36 1 5.0028 3.2100 3.1807 37 1 5.3233 5.1979 1.4191 38 1 5.6545 5.2866 -2.5900 39 1 6.1399 9.2366 -0.4526 40 1 6.9234 12.4515 -0.0240 41 1 5.1144 2.2450 -2.8774 42 1 3.3654 2.1094 -2.5757 43 1 4.0508 3.6432 -3.1639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195453871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:05 Heat of formation + Delta-G solvation = -14.915191 kcal Electronic energy + Delta-G solvation = -25442.970876 eV Core-core repulsion = 21681.864041 eV Total energy + Delta-G solvation = -3761.106835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.54514 -40.26585 -38.96049 -37.77049 -36.18442 -35.33726 -34.05228 -33.35956 -32.82780 -30.18045 -29.72004 -27.74418 -26.91003 -26.02076 -24.45717 -23.48477 -22.15938 -21.25410 -20.20837 -19.68973 -18.29359 -17.82815 -17.16615 -17.03940 -16.78964 -16.48321 -16.07044 -15.77619 -15.67959 -15.43058 -15.32513 -15.09554 -14.47561 -14.21460 -14.13854 -14.10538 -14.04086 -13.72665 -13.51524 -13.43700 -13.35282 -12.99300 -12.91391 -12.71187 -12.67449 -12.48758 -12.42688 -12.33769 -12.14676 -12.10945 -11.55239 -11.04961 -10.77726 -10.51194 -10.09178 -9.38168 -8.61607 -8.49598 -5.95851 -0.43571 1.16432 1.42656 1.43740 1.55962 1.58903 1.72233 1.84307 1.96337 2.30333 2.77767 2.84607 3.10258 3.25158 3.33642 3.62760 3.72229 3.78316 3.87449 4.04780 4.16775 4.20313 4.35774 4.43695 4.46331 4.48508 4.51069 4.59287 4.67869 4.72133 4.78338 4.83474 4.84936 4.99685 5.01303 5.14259 5.29515 5.38905 5.39877 5.78256 5.96439 5.99861 6.05346 6.26242 6.49651 6.58252 7.05517 7.47228 8.00689 8.68045 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.002529 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.872675 B =11068.076856 C =11597.404369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.050 3.950 4 C 0.098 3.902 5 N -0.424 5.424 6 C 0.014 3.986 7 C -0.083 4.083 8 C -0.196 4.196 9 C -0.229 4.229 10 C 0.125 3.875 11 C -0.177 4.177 12 C 0.284 3.716 13 N -0.471 5.471 14 C 0.497 3.503 15 O -0.621 6.621 16 N -0.567 5.567 17 C -0.331 4.331 18 H 0.097 0.903 19 C -0.021 4.021 20 N -0.924 5.924 21 Si 1.005 2.995 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.265 1.265 25 C 0.116 3.884 26 C -0.099 4.099 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.165 0.835 39 H 0.388 0.612 40 H 0.279 0.721 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 -26.986 1.068 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.028 4.028 4 C -0.023 4.023 5 N -0.100 5.100 6 C -0.093 4.093 7 C -0.140 4.140 8 C -0.219 4.219 9 C -0.235 4.235 10 C 0.100 3.900 11 C -0.185 4.185 12 C -0.027 4.027 13 N -0.150 5.150 14 C 0.286 3.714 15 O -0.510 6.510 16 N -0.200 5.200 17 C -0.461 4.461 18 H 0.115 0.885 19 C -0.221 4.221 20 N -0.564 5.564 21 Si 0.827 3.173 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.190 1.190 25 C -0.003 4.003 26 C -0.156 4.156 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.143 0.857 38 H 0.182 0.818 39 H 0.221 0.779 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.724 -27.055 2.151 29.564 hybrid contribution 0.227 1.606 0.138 1.628 sum -11.497 -25.448 2.289 28.018 Atomic orbital electron populations 1.22966 0.78888 1.04248 1.00870 1.87766 1.21750 1.26833 1.95648 1.22732 0.92994 0.85466 1.01618 1.21848 0.92105 0.80541 1.07758 1.43576 1.46859 1.14932 1.04628 1.20481 1.05920 0.92872 0.90066 1.20426 1.03240 1.02517 0.87862 1.22365 1.06921 0.98333 0.94325 1.18672 1.15511 0.96431 0.92922 1.21326 0.82569 0.87164 0.98956 1.18030 1.15837 0.96862 0.87805 1.25813 0.92511 0.91685 0.92720 1.81152 1.12009 1.09498 1.12344 1.17616 0.84198 0.82465 0.87115 1.90584 1.58551 1.81972 1.19886 1.41956 1.53303 1.09048 1.15716 1.19870 1.37139 0.90227 0.98825 0.88540 1.26350 0.97665 1.00485 0.97599 1.69733 1.47047 1.23466 1.16199 0.84809 0.78770 0.76047 0.77633 1.18922 1.19887 1.18989 1.21435 0.98059 0.90119 0.90685 1.20749 1.04580 1.03828 0.86475 0.93155 0.87781 0.93492 0.92937 0.92206 0.85982 0.86719 0.90491 0.89233 0.90341 0.85692 0.81767 0.77860 0.91175 0.87815 0.88883 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.40 -4.80 10.70 -148.98 -1.59 -6.39 16 3 C 0.05 0.55 6.26 71.98 0.45 1.00 16 4 C 0.10 1.01 5.73 86.38 0.49 1.51 16 5 N -0.42 -7.44 2.68 -494.02 -1.33 -8.77 16 6 C 0.01 0.30 6.84 40.93 0.28 0.58 16 7 C -0.08 -1.33 10.04 71.23 0.72 -0.61 16 8 C -0.20 -5.95 9.37 23.67 0.22 -5.73 16 9 C -0.23 -6.54 5.91 -20.03 -0.12 -6.66 16 10 C 0.13 4.14 9.19 23.14 0.21 4.35 16 11 C -0.18 -7.48 5.90 -19.80 -0.12 -7.60 16 12 C 0.28 12.31 10.95 88.31 0.97 13.28 16 13 N -0.47 -20.95 17.26 19.03 0.33 -20.62 16 14 C 0.50 25.73 7.69 86.49 0.67 26.39 16 15 O -0.62 -34.24 15.88 -4.39 -0.07 -34.31 16 16 N -0.57 -32.24 5.23 -310.49 -1.62 -33.87 16 17 C -0.33 -19.61 9.68 84.09 0.81 -18.79 16 18 H 0.10 5.80 7.15 -2.91 -0.02 5.78 16 19 C -0.02 -1.20 5.50 84.95 0.47 -0.73 16 20 N -0.92 -53.88 13.05 21.68 0.28 -53.60 16 21 Si 1.01 44.02 29.55 68.60 2.03 46.05 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 C 0.12 2.31 6.95 42.21 0.29 2.60 16 26 C -0.10 -1.16 9.62 71.23 0.69 -0.48 16 27 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 32 H 0.12 0.84 7.51 -2.39 -0.02 0.82 16 33 H 0.11 0.94 6.88 -2.38 -0.02 0.93 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 0.95 6.92 -2.39 -0.02 0.93 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 4.46 5.17 -2.91 -0.02 4.44 16 38 H 0.17 4.81 7.49 -2.91 -0.02 4.79 16 39 H 0.39 22.38 6.76 -92.71 -0.63 21.75 16 40 H 0.28 15.16 8.31 -92.70 -0.77 14.39 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 0.67 7.57 -2.39 -0.02 0.65 16 43 H 0.09 1.16 7.85 -2.39 -0.02 1.15 16 Total: -1.00 -77.08 373.01 5.73 -71.35 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.42 Total: 29.58 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 7.28 Total: 10.57 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -2.34 Total: -116.85 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.66 Total: -40.70 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -77.08 5.73 -71.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195453871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.439 kcal (2) G-P(sol) polarization free energy of solvation -77.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds