Wall clock time and date at job start Tue Mar 31 2020 11:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38599 * 119.16982 * 2 1 4 4 C 1.39439 * 119.20001 * 179.76984 * 3 2 1 5 5 C 1.48002 * 121.10594 * 180.21389 * 4 3 2 6 6 O 1.21531 * 119.99701 * 129.39332 * 5 4 3 7 7 N 1.34778 * 120.00075 * 309.40433 * 5 4 3 8 8 C 1.46496 * 119.99830 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47219 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47506 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99788 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00069 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99866 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00332 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47377 * 89.99928 * 14 12 10 16 16 H 1.48502 * 109.47603 * 209.99891 * 14 12 10 17 17 H 1.48504 * 109.47261 * 330.00042 * 14 12 10 18 18 C 1.40865 * 117.78996 * 0.48686 * 4 3 2 19 19 C 1.40516 * 119.27946 * 359.75055 * 18 4 3 20 20 N 1.31560 * 119.17109 * 180.26575 * 2 1 3 21 21 O 1.34844 * 106.85896 * 180.02562 * 19 18 4 22 22 N 1.41323 * 109.41816 * 0.02562 * 21 19 18 23 23 C 1.29813 * 109.73009 * 359.97438 * 22 21 19 24 24 C 1.50701 * 126.33544 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47021 * 291.14384 * 24 23 22 26 26 C 1.53001 * 109.47117 * 51.14499 * 24 23 22 27 27 H 1.09003 * 109.47315 * 269.72567 * 1 2 3 28 28 H 1.08996 * 109.47257 * 29.73240 * 1 2 3 29 29 H 1.09007 * 109.46427 * 149.72954 * 1 2 3 30 30 H 1.08001 * 120.39611 * 359.97438 * 3 2 1 31 31 H 0.96990 * 119.99792 * 359.97438 * 7 5 4 32 32 H 1.09007 * 109.47257 * 299.99448 * 8 7 5 33 33 H 1.09000 * 109.47560 * 59.99342 * 8 7 5 34 34 H 1.09003 * 109.47435 * 299.99912 * 9 8 7 35 35 H 1.09001 * 109.47263 * 59.99947 * 9 8 7 36 36 H 0.96996 * 119.99881 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.46821 * 171.14311 * 24 23 22 38 38 H 1.09004 * 109.46787 * 60.00328 * 25 24 23 39 39 H 1.09003 * 109.47144 * 179.97438 * 25 24 23 40 40 H 1.08991 * 109.47317 * 300.00317 * 25 24 23 41 41 H 1.08995 * 109.46998 * 179.97438 * 26 24 23 42 42 H 1.08992 * 109.47210 * 300.00374 * 26 24 23 43 43 H 1.09001 * 109.46878 * 60.00117 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1826 1.2102 0.0000 4 6 3.5770 1.2110 0.0049 5 6 4.3409 2.4786 0.0098 6 8 5.2238 2.6527 0.8266 7 7 4.0573 3.4398 -0.8914 8 6 4.8131 4.6947 -0.8861 9 6 4.2966 5.6059 -2.0013 10 6 5.0736 6.8971 -1.9955 11 1 5.8573 7.0525 -1.2687 12 6 4.7841 7.8800 -2.9180 13 7 5.4620 9.0071 -2.9126 14 14 3.4283 7.6116 -4.1746 15 1 2.1382 8.0973 -3.6222 16 1 3.7485 8.3609 -5.4161 17 1 3.3202 6.1633 -4.4844 18 6 4.2344 -0.0349 -0.0010 19 6 3.4712 -1.2147 -0.0060 20 7 2.1483 -1.1487 -0.0053 21 8 4.3423 -2.2439 -0.0104 22 7 5.6632 -1.7416 -0.0076 23 6 5.6384 -0.4437 -0.0022 24 6 6.8352 0.4722 0.0027 25 6 7.5551 0.3634 1.3484 26 6 7.7913 0.0682 -1.1214 27 1 -0.3634 -0.0049 1.0277 28 1 -0.3633 0.8923 -0.5096 29 1 -0.3632 -0.8876 -0.5181 30 1 1.6355 2.1414 -0.0004 31 1 3.3528 3.3006 -1.5433 32 1 4.6871 5.1907 0.0764 33 1 5.8697 4.4833 -1.0502 34 1 4.4229 5.1098 -2.9636 35 1 3.2399 5.8175 -1.8375 36 1 5.2581 9.6988 -3.5613 37 1 6.5067 1.5000 -0.1516 38 1 7.8836 -0.6644 1.5026 39 1 8.4209 1.0256 1.3518 40 1 6.8740 0.6512 2.1491 41 1 8.6566 0.7310 -1.1180 42 1 8.1197 -0.9595 -0.9672 43 1 7.2783 0.1458 -2.0800 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273024007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:36 Heat of formation + Delta-G solvation = 26.338808 kcal Electronic energy + Delta-G solvation = -26358.778345 eV Core-core repulsion = 22599.460418 eV Total energy + Delta-G solvation = -3759.317927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.39002 -39.94127 -39.03016 -36.49004 -35.26741 -33.63209 -32.88992 -32.39121 -31.87239 -30.21856 -28.07075 -27.31041 -25.83306 -24.24810 -23.82294 -23.07044 -21.02839 -20.88097 -19.65758 -18.08742 -17.89713 -17.46924 -17.00568 -16.67955 -15.92132 -15.41656 -14.94635 -14.67723 -14.46494 -14.38845 -14.28333 -14.11737 -13.69468 -13.53580 -13.45398 -13.08615 -12.72643 -12.69202 -12.47304 -12.35344 -12.17942 -11.72731 -11.63849 -11.59819 -11.38658 -11.13473 -10.89680 -10.65987 -10.50490 -10.27112 -10.05642 -9.79641 -9.70384 -9.44119 -9.25818 -8.87438 -8.70092 -6.20405 -4.21664 -0.07685 0.54990 1.63277 1.80090 2.47050 2.97443 3.17437 3.17612 3.25294 3.26825 3.39519 3.72281 4.08995 4.14072 4.28736 4.38223 4.54735 4.72243 4.90451 4.92858 4.96937 5.01263 5.12314 5.16690 5.33227 5.39803 5.44435 5.49727 5.57753 5.64243 5.71667 5.88150 5.89461 5.91325 5.99994 6.09810 6.12287 6.37014 6.39882 6.79370 6.94115 7.06954 7.27179 7.48160 7.54801 8.07346 8.33206 8.83030 9.39104 10.92428 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.003681 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.883951 B = 7604.101470 C = 9086.244086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.204 3.796 3 C -0.178 4.178 4 C 0.012 3.988 5 C 0.546 3.454 6 O -0.516 6.516 7 N -0.708 5.708 8 C 0.128 3.872 9 C -0.022 4.022 10 C -0.526 4.526 11 H 0.077 0.923 12 C 0.071 3.929 13 N -0.896 5.896 14 Si 0.881 3.119 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.266 1.266 18 C -0.216 4.216 19 C 0.297 3.703 20 N -0.475 5.475 21 O -0.084 6.084 22 N -0.273 5.273 23 C 0.166 3.834 24 C -0.040 4.040 25 C -0.136 4.136 26 C -0.147 4.147 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.158 0.842 31 H 0.400 0.600 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.266 0.734 37 H 0.119 0.881 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 -18.293 4.770 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.061 3.939 3 C -0.199 4.199 4 C -0.001 4.001 5 C 0.330 3.670 6 O -0.393 6.393 7 N -0.358 5.358 8 C 0.006 3.994 9 C -0.060 4.060 10 C -0.564 4.564 11 H 0.095 0.905 12 C -0.131 4.131 13 N -0.534 5.534 14 Si 0.708 3.292 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.191 1.191 18 C -0.223 4.223 19 C 0.114 3.886 20 N -0.196 5.196 21 O -0.087 6.087 22 N -0.019 5.019 23 C -0.015 4.015 24 C -0.059 4.059 25 C -0.194 4.194 26 C -0.205 4.205 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.176 0.824 31 H 0.234 0.766 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.606 -19.966 5.243 21.391 hybrid contribution -1.070 1.266 -1.011 1.941 sum -6.675 -18.700 4.232 20.302 Atomic orbital electron populations 1.20891 0.86705 1.04679 1.04237 1.21375 0.97265 0.85970 0.89338 1.22137 0.92507 1.00498 1.04792 1.20088 0.93753 0.92726 0.93562 1.18047 0.83615 0.82860 0.82525 1.90799 1.30747 1.79753 1.38027 1.46364 1.38568 1.17446 1.33401 1.21681 0.95361 0.80995 1.01346 1.19807 0.97065 0.95578 0.93546 1.20865 1.19813 0.97931 1.17796 0.90537 1.24988 0.96123 0.94856 0.97163 1.69896 1.40745 1.06309 1.36420 0.86775 0.82483 0.78677 0.81276 1.20147 1.21187 1.19108 1.21206 0.92861 0.94782 1.13463 1.20290 0.89167 0.86434 0.92679 1.66343 1.05010 1.30320 1.17932 1.89259 1.12037 1.26411 1.81008 1.80058 0.90310 1.10518 1.21008 1.24610 0.94495 0.92384 0.90030 1.20301 0.89320 0.98220 0.98107 1.21740 1.00585 1.02107 0.94956 1.21890 0.99113 1.02346 0.97134 0.89134 0.89303 0.89498 0.82403 0.76570 0.91257 0.91351 0.95889 0.96288 0.92436 0.86332 0.92450 0.90848 0.91743 0.90736 0.91844 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.15 36.01 0.37 -0.25 16 2 C 0.20 2.00 6.78 -82.57 -0.56 1.44 16 3 C -0.18 -1.76 9.38 -39.00 -0.37 -2.13 16 4 C 0.01 0.15 5.71 -104.45 -0.60 -0.45 16 5 C 0.55 7.88 6.42 -12.26 -0.08 7.81 16 6 O -0.52 -8.77 14.45 5.34 0.08 -8.69 16 7 N -0.71 -9.99 5.53 -61.20 -0.34 -10.33 16 8 C 0.13 2.27 5.61 -4.05 -0.02 2.25 16 9 C -0.02 -0.46 4.16 -27.89 -0.12 -0.58 16 10 C -0.53 -13.81 9.66 -34.44 -0.33 -14.14 16 11 H 0.08 2.18 7.99 -52.49 -0.42 1.77 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -26.20 13.96 55.43 0.77 -25.43 16 14 Si 0.88 19.98 27.47 -169.99 -4.67 15.31 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -5.67 6.54 56.52 0.37 -5.30 16 18 C -0.22 -3.04 6.17 -104.83 -0.65 -3.69 16 19 C 0.30 4.27 8.64 -16.43 -0.14 4.13 16 20 N -0.47 -6.08 10.25 -9.24 -0.09 -6.17 16 21 O -0.08 -1.29 12.06 7.63 0.09 -1.20 16 22 N -0.27 -3.98 12.74 34.84 0.44 -3.54 16 23 C 0.17 2.31 6.01 -80.24 -0.48 1.83 16 24 C -0.04 -0.51 2.89 -91.77 -0.26 -0.77 16 25 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 26 C -0.15 -1.59 9.12 37.16 0.34 -1.25 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.33 8.07 -51.93 -0.42 -0.09 16 29 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.40 4.67 8.37 -40.82 -0.34 4.32 16 32 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.12 1.69 4.60 -51.93 -0.24 1.45 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -31.46 364.13 -6.89 -38.35 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.00 Total: 1.40 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.66 Total: -5.18 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.78 Total: -45.47 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.17 Total: -9.89 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.46 -6.89 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273024007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.686 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds