Wall clock time and date at job start Tue Mar 31 2020 11:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38599 * 119.16982 * 2 1 4 4 C 1.39439 * 119.20001 * 179.76984 * 3 2 1 5 5 C 1.48002 * 121.10594 * 180.21389 * 4 3 2 6 6 O 1.21531 * 119.99701 * 129.39332 * 5 4 3 7 7 N 1.34778 * 120.00075 * 309.40433 * 5 4 3 8 8 C 1.46496 * 119.99830 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47219 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47506 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99788 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00069 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99866 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00332 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47377 * 89.99928 * 14 12 10 16 16 H 1.48502 * 109.47603 * 209.99891 * 14 12 10 17 17 H 1.48504 * 109.47261 * 330.00042 * 14 12 10 18 18 C 1.40865 * 117.78996 * 0.48686 * 4 3 2 19 19 C 1.40516 * 119.27946 * 359.75055 * 18 4 3 20 20 N 1.31560 * 119.17109 * 180.26575 * 2 1 3 21 21 O 1.34844 * 106.85896 * 180.02562 * 19 18 4 22 22 N 1.41323 * 109.41816 * 0.02562 * 21 19 18 23 23 C 1.29813 * 109.73009 * 359.97438 * 22 21 19 24 24 C 1.50701 * 126.33544 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47021 * 291.14384 * 24 23 22 26 26 C 1.53001 * 109.47117 * 51.14499 * 24 23 22 27 27 H 1.09003 * 109.47315 * 269.72567 * 1 2 3 28 28 H 1.08996 * 109.47257 * 29.73240 * 1 2 3 29 29 H 1.09007 * 109.46427 * 149.72954 * 1 2 3 30 30 H 1.08001 * 120.39611 * 359.97438 * 3 2 1 31 31 H 0.96990 * 119.99792 * 359.97438 * 7 5 4 32 32 H 1.09007 * 109.47257 * 299.99448 * 8 7 5 33 33 H 1.09000 * 109.47560 * 59.99342 * 8 7 5 34 34 H 1.09003 * 109.47435 * 299.99912 * 9 8 7 35 35 H 1.09001 * 109.47263 * 59.99947 * 9 8 7 36 36 H 0.96996 * 119.99881 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.46821 * 171.14311 * 24 23 22 38 38 H 1.09004 * 109.46787 * 60.00328 * 25 24 23 39 39 H 1.09003 * 109.47144 * 179.97438 * 25 24 23 40 40 H 1.08991 * 109.47317 * 300.00317 * 25 24 23 41 41 H 1.08995 * 109.46998 * 179.97438 * 26 24 23 42 42 H 1.08992 * 109.47210 * 300.00374 * 26 24 23 43 43 H 1.09001 * 109.46878 * 60.00117 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1826 1.2102 0.0000 4 6 3.5770 1.2110 0.0049 5 6 4.3409 2.4786 0.0098 6 8 5.2238 2.6527 0.8266 7 7 4.0573 3.4398 -0.8914 8 6 4.8131 4.6947 -0.8861 9 6 4.2966 5.6059 -2.0013 10 6 5.0736 6.8971 -1.9955 11 1 5.8573 7.0525 -1.2687 12 6 4.7841 7.8800 -2.9180 13 7 5.4620 9.0071 -2.9126 14 14 3.4283 7.6116 -4.1746 15 1 2.1382 8.0973 -3.6222 16 1 3.7485 8.3609 -5.4161 17 1 3.3202 6.1633 -4.4844 18 6 4.2344 -0.0349 -0.0010 19 6 3.4712 -1.2147 -0.0060 20 7 2.1483 -1.1487 -0.0053 21 8 4.3423 -2.2439 -0.0104 22 7 5.6632 -1.7416 -0.0076 23 6 5.6384 -0.4437 -0.0022 24 6 6.8352 0.4722 0.0027 25 6 7.5551 0.3634 1.3484 26 6 7.7913 0.0682 -1.1214 27 1 -0.3634 -0.0049 1.0277 28 1 -0.3633 0.8923 -0.5096 29 1 -0.3632 -0.8876 -0.5181 30 1 1.6355 2.1414 -0.0004 31 1 3.3528 3.3006 -1.5433 32 1 4.6871 5.1907 0.0764 33 1 5.8697 4.4833 -1.0502 34 1 4.4229 5.1098 -2.9636 35 1 3.2399 5.8175 -1.8375 36 1 5.2581 9.6988 -3.5613 37 1 6.5067 1.5000 -0.1516 38 1 7.8836 -0.6644 1.5026 39 1 8.4209 1.0256 1.3518 40 1 6.8740 0.6512 2.1491 41 1 8.6566 0.7310 -1.1180 42 1 8.1197 -0.9595 -0.9672 43 1 7.2783 0.1458 -2.0800 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273024007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:35 Heat of formation + Delta-G solvation = 3.713454 kcal Electronic energy + Delta-G solvation = -26359.759454 eV Core-core repulsion = 22599.460418 eV Total energy + Delta-G solvation = -3760.299036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.38518 -41.06724 -40.01794 -37.51234 -36.68358 -34.92519 -34.41134 -33.18996 -32.95544 -31.83178 -28.85157 -28.21165 -27.29825 -25.46966 -24.77085 -24.09871 -22.64309 -21.95735 -20.75279 -19.05938 -19.00471 -18.92086 -18.40632 -17.72522 -17.08053 -16.67799 -16.23405 -16.10411 -15.57047 -15.46477 -15.17484 -15.06875 -14.93185 -14.74962 -14.52877 -14.45342 -13.88792 -13.34834 -13.33714 -13.26281 -13.12604 -13.03839 -12.98847 -12.67952 -12.53722 -12.28018 -12.20350 -12.04198 -11.84225 -11.72825 -11.61138 -11.42311 -10.81846 -10.75721 -10.74144 -10.14835 -10.14326 -8.26886 -6.33912 -1.02826 -0.37211 0.61341 0.80934 1.36033 1.41969 1.44587 1.54890 1.84728 2.23755 2.39307 2.41619 2.75257 3.09008 3.14525 3.28306 3.42556 3.63919 3.85140 3.96772 4.05988 4.10665 4.12519 4.35334 4.44882 4.51491 4.52244 4.63423 4.73689 4.77812 4.78108 4.80854 4.88096 4.93729 4.97510 5.05254 5.17647 5.19014 5.33933 5.38172 5.43378 5.63918 5.76917 6.23361 6.36329 6.38864 6.74353 6.96527 7.30944 8.89663 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.003681 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.883951 B = 7604.101470 C = 9086.244086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.211 3.789 3 C -0.158 4.158 4 C -0.001 4.001 5 C 0.553 3.447 6 O -0.545 6.545 7 N -0.696 5.696 8 C 0.144 3.856 9 C -0.015 4.015 10 C -0.536 4.536 11 H 0.032 0.968 12 C 0.005 3.995 13 N -0.951 5.951 14 Si 0.954 3.046 15 H -0.263 1.263 16 H -0.292 1.292 17 H -0.236 1.236 18 C -0.235 4.235 19 C 0.281 3.719 20 N -0.490 5.490 21 O -0.103 6.103 22 N -0.286 5.286 23 C 0.163 3.837 24 C -0.041 4.041 25 C -0.132 4.132 26 C -0.143 4.143 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.195 0.805 31 H 0.416 0.584 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.040 0.960 36 H 0.267 0.733 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.674 -19.182 3.849 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.067 3.933 3 C -0.178 4.178 4 C -0.013 4.013 5 C 0.338 3.662 6 O -0.423 6.423 7 N -0.347 5.347 8 C 0.021 3.979 9 C -0.053 4.053 10 C -0.574 4.574 11 H 0.050 0.950 12 C -0.192 4.192 13 N -0.591 5.591 14 Si 0.777 3.223 15 H -0.188 1.188 16 H -0.218 1.218 17 H -0.158 1.158 18 C -0.242 4.242 19 C 0.099 3.901 20 N -0.212 5.212 21 O -0.105 6.105 22 N -0.034 5.034 23 C -0.017 4.017 24 C -0.060 4.060 25 C -0.190 4.190 26 C -0.201 4.201 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.107 0.893 30 H 0.212 0.788 31 H 0.254 0.746 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.726 -20.896 4.326 23.054 hybrid contribution -0.132 1.577 -0.633 1.705 sum -8.858 -19.319 3.692 21.572 Atomic orbital electron populations 1.21117 0.83249 1.06307 1.05692 1.22194 0.99140 0.85023 0.86917 1.22597 0.91198 1.02118 1.01914 1.19957 0.94843 0.91078 0.95464 1.18205 0.83124 0.83152 0.81753 1.90793 1.32033 1.80327 1.39195 1.46013 1.38651 1.16111 1.33897 1.21194 0.94946 0.82036 0.99723 1.19677 0.97225 0.93365 0.95038 1.21240 1.19170 1.00523 1.16489 0.94977 1.26036 0.99084 0.94305 0.99764 1.70075 1.43337 1.07775 1.37946 0.85611 0.78869 0.80237 0.77607 1.18833 1.21826 1.15845 1.21305 0.92836 0.95353 1.14721 1.20489 0.89787 0.86211 0.93658 1.66476 1.04246 1.31972 1.18495 1.89192 1.12552 1.27325 1.81461 1.80012 0.90224 1.10916 1.22247 1.24849 0.95132 0.92375 0.89373 1.20324 0.89415 0.97060 0.99207 1.21715 1.00532 1.02806 0.93925 1.21877 0.99077 1.02865 0.96250 0.87443 0.86284 0.89288 0.78753 0.74647 0.92492 0.92822 0.94610 0.94176 0.92453 0.87911 0.91739 0.89634 0.93196 0.89439 0.91448 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.15 71.24 0.72 -0.01 16 2 C 0.21 3.44 6.78 42.69 0.29 3.73 16 3 C -0.16 -2.54 9.38 22.65 0.21 -2.33 16 4 C 0.00 -0.01 5.71 -19.76 -0.11 -0.13 16 5 C 0.55 15.21 6.42 86.83 0.56 15.76 16 6 O -0.54 -18.46 14.45 -3.81 -0.06 -18.52 16 7 N -0.70 -18.01 5.53 -465.83 -2.57 -20.58 16 8 C 0.14 4.98 5.61 86.38 0.48 5.46 16 9 C -0.02 -0.60 4.16 29.85 0.12 -0.48 16 10 C -0.54 -28.38 9.66 25.60 0.25 -28.13 16 11 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 12 C 0.01 0.29 5.47 84.65 0.46 0.75 16 13 N -0.95 -57.04 13.96 21.45 0.30 -56.74 16 14 Si 0.95 39.74 27.47 68.60 1.88 41.62 16 15 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 16 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.24 -8.57 6.54 99.48 0.65 -7.92 16 18 C -0.24 -6.52 6.17 -20.00 -0.12 -6.64 16 19 C 0.28 7.97 8.64 85.16 0.74 8.70 16 20 N -0.49 -11.75 10.25 -296.36 -3.04 -14.79 16 21 O -0.10 -3.21 12.06 29.70 0.36 -2.85 16 22 N -0.29 -8.53 12.74 -43.67 -0.56 -9.09 16 23 C 0.16 4.61 6.01 44.94 0.27 4.88 16 24 C -0.04 -1.03 2.89 -11.54 -0.03 -1.07 16 25 C -0.13 -3.05 9.18 71.98 0.66 -2.39 16 26 C -0.14 -3.05 9.12 71.98 0.66 -2.39 16 27 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.12 0.17 8.07 -2.39 -0.02 0.15 16 29 H 0.09 0.65 8.14 -2.38 -0.02 0.64 16 30 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.42 8.09 8.37 -92.72 -0.78 7.32 16 32 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.04 1.34 7.20 -2.39 -0.02 1.32 16 35 H 0.04 1.44 7.57 -2.39 -0.02 1.42 16 36 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.10 2.97 4.60 -2.39 -0.01 2.96 16 38 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -71.73 364.13 1.68 -70.05 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.21 Total: 15.18 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.15 Total: -4.29 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -5.87 Total: -101.20 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.30 Total: -21.37 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.88 Total: 41.62 kcal Total: -71.73 1.68 -70.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273024007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.765 kcal (2) G-P(sol) polarization free energy of solvation -71.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds