Wall clock time and date at job start Tue Mar 31 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35269 * 126.70740 * 2 1 4 4 C 1.41959 * 103.96111 * 179.97438 * 3 2 1 5 5 N 1.39875 * 126.88873 * 180.02562 * 4 3 2 6 6 C 1.36742 * 124.94908 * 226.96739 * 5 4 3 7 7 C 1.50698 * 125.56327 * 359.97438 * 6 5 4 8 8 C 1.34413 * 108.87491 * 179.97438 * 6 5 4 9 9 C 1.46734 * 106.51410 * 359.97438 * 8 6 5 10 10 C 1.47261 * 126.88835 * 179.97438 * 9 8 6 11 11 O 1.21625 * 120.00235 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00039 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00115 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47267 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47213 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00007 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99919 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00051 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99857 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47394 * 89.99861 * 19 17 15 21 21 H 1.48499 * 109.47025 * 209.99723 * 19 17 15 22 22 H 1.48500 * 109.47000 * 329.99729 * 19 17 15 23 23 C 1.35506 * 124.95207 * 47.20657 * 5 4 3 24 24 C 1.50702 * 125.85931 * 0.04563 * 23 5 4 25 25 N 1.30663 * 106.22581 * 0.26202 * 4 3 2 26 26 O 1.20914 * 111.49028 * 359.53490 * 25 4 3 27 27 H 1.08996 * 109.47513 * 89.99476 * 1 2 3 28 28 H 1.09005 * 109.47328 * 210.00337 * 1 2 3 29 29 H 1.09002 * 109.46875 * 329.99804 * 1 2 3 30 30 H 1.08006 * 128.02066 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47446 * 275.15674 * 7 6 5 32 32 H 1.08999 * 109.46840 * 35.15691 * 7 6 5 33 33 H 1.09006 * 109.46881 * 155.15571 * 7 6 5 34 34 H 1.07997 * 126.74623 * 180.02562 * 8 6 5 35 35 H 0.97000 * 119.99966 * 0.02562 * 12 10 9 36 36 H 1.08996 * 109.47168 * 299.99932 * 13 12 10 37 37 H 1.08998 * 109.46969 * 59.99932 * 13 12 10 38 38 H 1.09006 * 109.46882 * 299.99850 * 14 13 12 39 39 H 1.09002 * 109.47020 * 59.99581 * 14 13 12 40 40 H 0.96998 * 119.99675 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.47083 * 270.20075 * 24 23 5 42 42 H 1.09001 * 109.46730 * 30.19648 * 24 23 5 43 43 H 1.08994 * 109.47570 * 150.20150 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6247 0.5356 0.0006 5 7 4.8316 1.2426 0.0014 6 6 5.8946 0.9788 -0.8174 7 6 5.9516 -0.1120 -1.8556 8 6 6.8802 1.8511 -0.5451 9 6 6.3828 2.7213 0.5266 10 6 7.1026 3.8353 1.1664 11 8 6.5673 4.4780 2.0494 12 7 8.3547 4.1428 0.7736 13 6 9.0706 5.2514 1.4096 14 6 10.4599 5.3875 0.7835 15 6 11.1965 6.5275 1.4382 16 1 10.7211 7.0983 2.2223 17 6 12.4770 6.8427 1.0357 18 7 13.0558 6.1480 0.0807 19 14 13.3904 8.2554 1.8478 20 1 14.1500 7.7463 3.0178 21 1 14.3316 8.8620 0.8725 22 1 12.4156 9.2809 2.2987 23 6 5.1196 2.2860 0.8167 24 6 4.2032 2.8691 1.8613 25 7 3.4764 -0.7626 -0.0048 26 8 2.3083 -1.0750 0.0006 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 2.0311 2.1264 -0.0004 31 1 6.2577 -1.0462 -1.3847 32 1 4.9667 -0.2374 -2.3053 33 1 6.6718 0.1587 -2.6278 34 1 7.8478 1.9022 -1.0220 35 1 8.7816 3.6305 0.0691 36 1 8.5134 6.1764 1.2612 37 1 9.1704 5.0546 2.4770 38 1 11.0174 4.4625 0.9315 39 1 10.3597 5.5845 -0.2839 40 1 13.9565 6.3700 -0.2028 41 1 3.5982 3.6580 1.4144 42 1 3.5510 2.0869 2.2498 43 1 4.7976 3.2841 2.6753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273154793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:32 Heat of formation + Delta-G solvation = 61.002037 kcal Electronic energy + Delta-G solvation = -25456.663903 eV Core-core repulsion = 21698.849087 eV Total energy + Delta-G solvation = -3757.814817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.56981 -41.66712 -38.69897 -35.06558 -34.78041 -34.03919 -32.91138 -32.68409 -31.00857 -29.62770 -29.07651 -28.39579 -25.58782 -24.43107 -24.05092 -22.74371 -21.78225 -20.81486 -19.56423 -18.90015 -18.23635 -17.60428 -17.06665 -16.31285 -15.85684 -15.53782 -14.91593 -14.66171 -14.51989 -14.42407 -14.27639 -13.88004 -13.81552 -13.40607 -13.35088 -13.12649 -12.96868 -12.82625 -12.66916 -12.52982 -12.40556 -12.23920 -11.68864 -11.57830 -11.13823 -11.00826 -10.92881 -10.59739 -10.25560 -9.97239 -9.72228 -9.40654 -9.13913 -8.80645 -8.46200 -8.30318 -8.07001 -6.04772 -4.07174 0.78025 1.23945 1.91701 2.04197 2.30347 2.53536 3.32576 3.38458 3.42696 3.79194 3.87906 3.95381 4.03729 4.33307 4.46404 4.60819 4.63264 4.72025 4.80350 4.96664 5.01346 5.13892 5.16499 5.30555 5.32171 5.35975 5.38051 5.50079 5.55678 5.67597 5.73701 5.90429 6.15675 6.44071 6.44292 6.65294 6.82007 6.82516 7.01370 7.07569 7.59107 7.65776 7.69002 7.94158 8.18562 8.34653 8.82376 8.99126 9.57188 11.06874 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032920 B = 0.002235 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.338724 B =12526.008856 C =13222.720033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.015 4.015 3 C -0.226 4.226 4 C 0.233 3.767 5 N -0.375 5.375 6 C 0.023 3.977 7 C -0.081 4.081 8 C -0.153 4.153 9 C -0.205 4.205 10 C 0.583 3.417 11 O -0.558 6.558 12 N -0.715 5.715 13 C 0.124 3.876 14 C 0.012 3.988 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.109 3.891 24 C -0.092 4.092 25 N -0.355 5.355 26 O 0.116 5.884 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.180 0.820 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.397 0.603 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.453 -15.452 -4.006 30.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.249 4.249 4 C -0.014 4.014 5 N -0.056 5.056 6 C -0.082 4.082 7 C -0.138 4.138 8 C -0.177 4.177 9 C -0.215 4.215 10 C 0.370 3.630 11 O -0.438 6.438 12 N -0.364 5.364 13 C 0.001 3.999 14 C -0.026 4.026 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.003 4.003 24 C -0.149 4.149 25 N -0.059 5.059 26 O 0.047 5.953 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.198 0.802 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.174 0.826 35 H 0.231 0.769 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -26.024 -16.191 -3.505 30.849 hybrid contribution 0.654 1.208 -0.058 1.375 sum -25.369 -14.983 -3.562 29.678 Atomic orbital electron populations 1.20422 0.83119 1.05184 1.04590 1.24403 0.96635 0.85475 1.01340 1.22367 0.89697 1.01899 1.10916 1.20297 0.87310 0.88540 1.05280 1.40085 1.09266 1.25624 1.30626 1.20338 0.87281 1.02148 0.98389 1.20320 1.02681 0.95276 0.95547 1.21926 0.99134 0.96688 0.99914 1.20353 0.95048 1.02326 1.03766 1.17229 0.81460 0.82305 0.81999 1.90700 1.67994 1.53113 1.32043 1.46094 1.14773 1.35387 1.40130 1.21703 0.94371 0.86911 0.96872 1.19329 0.88880 0.97821 0.96534 1.21061 0.99350 1.15269 1.20165 0.92249 1.25002 0.97533 0.96771 0.95069 1.69957 1.14386 1.40167 1.28801 0.86516 0.79613 0.82342 0.79095 1.20601 1.21217 1.19746 1.20462 0.95837 0.89309 0.94656 1.20605 0.97867 0.99787 0.96615 1.74154 0.97242 1.14182 1.20331 1.84901 1.10459 1.32583 1.67344 0.88901 0.89346 0.88557 0.80238 0.90736 0.92235 0.89528 0.82639 0.76879 0.92565 0.92577 0.95930 0.95914 0.92901 0.90277 0.92236 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 10.45 36.01 0.38 0.24 16 2 C -0.02 -0.10 7.48 -35.37 -0.26 -0.36 16 3 C -0.23 -1.84 10.03 -39.22 -0.39 -2.23 16 4 C 0.23 2.69 6.53 -154.52 -1.01 1.68 16 5 N -0.37 -5.01 2.93 -54.17 -0.16 -5.17 16 6 C 0.02 0.30 6.82 -81.75 -0.56 -0.26 16 7 C -0.08 -0.81 9.78 36.00 0.35 -0.46 16 8 C -0.15 -2.12 10.44 -37.50 -0.39 -2.51 16 9 C -0.21 -3.31 6.29 -103.35 -0.65 -3.96 16 10 C 0.58 11.04 7.81 -12.59 -0.10 10.94 16 11 O -0.56 -11.88 14.81 5.26 0.08 -11.80 16 12 N -0.72 -13.61 5.55 -61.44 -0.34 -13.95 16 13 C 0.12 2.74 5.61 -4.04 -0.02 2.72 16 14 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 19 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.11 1.58 6.86 -81.51 -0.56 1.02 16 24 C -0.09 -1.12 9.01 36.01 0.32 -0.80 16 25 N -0.36 -4.11 11.85 31.24 0.37 -3.74 16 26 O 0.12 1.04 11.19 17.09 0.19 1.23 16 27 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.18 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.59 7.91 -51.93 -0.41 0.18 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.16 1.84 7.69 -52.49 -0.40 1.44 16 35 H 0.40 6.72 7.59 -40.82 -0.31 6.41 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.62 7.42 -51.93 -0.39 0.23 16 43 H 0.11 1.53 6.47 -51.93 -0.34 1.20 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -34.54 369.82 -8.05 -42.60 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.04 Total: 1.61 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.45 Total: -7.26 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.61 Total: -48.59 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.27 Total: -10.57 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.54 -8.05 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273154793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.598 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds