Wall clock time and date at job start Tue Mar 31 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35269 * 126.70740 * 2 1 4 4 C 1.41959 * 103.96111 * 179.97438 * 3 2 1 5 5 N 1.39875 * 126.88873 * 180.02562 * 4 3 2 6 6 C 1.36742 * 124.94908 * 226.96739 * 5 4 3 7 7 C 1.50698 * 125.56327 * 359.97438 * 6 5 4 8 8 C 1.34413 * 108.87491 * 179.97438 * 6 5 4 9 9 C 1.46734 * 106.51410 * 359.97438 * 8 6 5 10 10 C 1.47261 * 126.88835 * 179.97438 * 9 8 6 11 11 O 1.21625 * 120.00235 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00039 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00115 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47267 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47213 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00007 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99919 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00051 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99857 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47394 * 89.99861 * 19 17 15 21 21 H 1.48499 * 109.47025 * 209.99723 * 19 17 15 22 22 H 1.48500 * 109.47000 * 329.99729 * 19 17 15 23 23 C 1.35506 * 124.95207 * 47.20657 * 5 4 3 24 24 C 1.50702 * 125.85931 * 0.04563 * 23 5 4 25 25 N 1.30663 * 106.22581 * 0.26202 * 4 3 2 26 26 O 1.20914 * 111.49028 * 359.53490 * 25 4 3 27 27 H 1.08996 * 109.47513 * 89.99476 * 1 2 3 28 28 H 1.09005 * 109.47328 * 210.00337 * 1 2 3 29 29 H 1.09002 * 109.46875 * 329.99804 * 1 2 3 30 30 H 1.08006 * 128.02066 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47446 * 275.15674 * 7 6 5 32 32 H 1.08999 * 109.46840 * 35.15691 * 7 6 5 33 33 H 1.09006 * 109.46881 * 155.15571 * 7 6 5 34 34 H 1.07997 * 126.74623 * 180.02562 * 8 6 5 35 35 H 0.97000 * 119.99966 * 0.02562 * 12 10 9 36 36 H 1.08996 * 109.47168 * 299.99932 * 13 12 10 37 37 H 1.08998 * 109.46969 * 59.99932 * 13 12 10 38 38 H 1.09006 * 109.46882 * 299.99850 * 14 13 12 39 39 H 1.09002 * 109.47020 * 59.99581 * 14 13 12 40 40 H 0.96998 * 119.99675 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.47083 * 270.20075 * 24 23 5 42 42 H 1.09001 * 109.46730 * 30.19648 * 24 23 5 43 43 H 1.08994 * 109.47570 * 150.20150 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6247 0.5356 0.0006 5 7 4.8316 1.2426 0.0014 6 6 5.8946 0.9788 -0.8174 7 6 5.9516 -0.1120 -1.8556 8 6 6.8802 1.8511 -0.5451 9 6 6.3828 2.7213 0.5266 10 6 7.1026 3.8353 1.1664 11 8 6.5673 4.4780 2.0494 12 7 8.3547 4.1428 0.7736 13 6 9.0706 5.2514 1.4096 14 6 10.4599 5.3875 0.7835 15 6 11.1965 6.5275 1.4382 16 1 10.7211 7.0983 2.2223 17 6 12.4770 6.8427 1.0357 18 7 13.0558 6.1480 0.0807 19 14 13.3904 8.2554 1.8478 20 1 14.1500 7.7463 3.0178 21 1 14.3316 8.8620 0.8725 22 1 12.4156 9.2809 2.2987 23 6 5.1196 2.2860 0.8167 24 6 4.2032 2.8691 1.8613 25 7 3.4764 -0.7626 -0.0048 26 8 2.3083 -1.0750 0.0006 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 2.0311 2.1264 -0.0004 31 1 6.2577 -1.0462 -1.3847 32 1 4.9667 -0.2374 -2.3053 33 1 6.6718 0.1587 -2.6278 34 1 7.8478 1.9022 -1.0220 35 1 8.7816 3.6305 0.0691 36 1 8.5134 6.1764 1.2612 37 1 9.1704 5.0546 2.4770 38 1 11.0174 4.4625 0.9315 39 1 10.3597 5.5845 -0.2839 40 1 13.9565 6.3700 -0.2028 41 1 3.5982 3.6580 1.4144 42 1 3.5510 2.0869 2.2498 43 1 4.7976 3.2841 2.6753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273154793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:32 Heat of formation + Delta-G solvation = 40.527230 kcal Electronic energy + Delta-G solvation = -25457.551758 eV Core-core repulsion = 21698.849087 eV Total energy + Delta-G solvation = -3758.702671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.28833 -42.71636 -40.22676 -36.57554 -35.85267 -34.80469 -34.60689 -33.77728 -32.22958 -31.19337 -30.16491 -28.77218 -27.22128 -25.79740 -24.99431 -23.74589 -22.96534 -22.55992 -20.88520 -19.76963 -18.98045 -18.55817 -18.36645 -18.04861 -17.07725 -16.67926 -16.52862 -16.39656 -16.06710 -15.32948 -15.01085 -14.72873 -14.64247 -14.47191 -14.29463 -14.21698 -14.15240 -13.98346 -13.69791 -13.45205 -13.29535 -13.25832 -13.18337 -12.93029 -12.62388 -12.50181 -12.35317 -12.22496 -11.75759 -11.64373 -11.45001 -10.87940 -10.59514 -10.51963 -10.08024 -9.73839 -9.20453 -8.22819 -6.33316 0.03080 0.47776 0.87113 1.09760 1.32098 1.42250 1.43157 1.54676 2.02571 2.34402 2.45325 2.52890 3.11612 3.12060 3.27266 3.63455 3.77986 3.87164 4.01535 4.04438 4.21353 4.32844 4.47845 4.51694 4.53272 4.56606 4.59075 4.67442 4.70209 4.75693 4.83526 4.86779 4.89939 4.91510 5.11531 5.22697 5.33735 5.51777 5.57743 5.59427 5.76762 5.80816 6.05675 6.17337 6.69162 6.79838 6.98867 7.31702 7.35664 8.89154 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032920 B = 0.002235 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.338724 B =12526.008856 C =13222.720033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.007 3.993 3 C -0.235 4.235 4 C 0.203 3.797 5 N -0.374 5.374 6 C 0.019 3.981 7 C -0.075 4.075 8 C -0.162 4.162 9 C -0.239 4.239 10 C 0.584 3.416 11 O -0.587 6.587 12 N -0.713 5.713 13 C 0.143 3.857 14 C 0.023 3.977 15 C -0.545 4.545 16 H 0.060 0.940 17 C 0.005 3.995 18 N -0.927 5.927 19 Si 0.967 3.033 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.265 1.265 23 C 0.112 3.888 24 C -0.086 4.086 25 N -0.381 5.381 26 O 0.117 5.883 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.197 0.803 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.407 0.593 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.519 -15.889 -4.257 32.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C -0.258 4.258 4 C -0.042 4.042 5 N -0.054 5.054 6 C -0.086 4.086 7 C -0.133 4.133 8 C -0.186 4.186 9 C -0.248 4.248 10 C 0.373 3.627 11 O -0.469 6.469 12 N -0.362 5.362 13 C 0.020 3.980 14 C -0.015 4.015 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.194 4.194 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.190 1.190 23 C -0.001 4.001 24 C -0.144 4.144 25 N -0.084 5.084 26 O 0.047 5.953 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.214 0.786 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.187 0.813 35 H 0.243 0.757 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -28.098 -16.660 -3.776 32.883 hybrid contribution 1.127 1.225 -0.008 1.665 sum -26.970 -15.435 -3.784 31.304 Atomic orbital electron populations 1.20726 0.79590 1.06791 1.06164 1.25185 0.98113 0.83952 0.98411 1.22626 0.88328 1.03254 1.11640 1.20627 0.87540 0.89040 1.07033 1.40162 1.10079 1.25165 1.29970 1.20825 0.86944 1.02294 0.98533 1.20375 1.03383 0.94316 0.95178 1.22106 1.00143 0.96629 0.99700 1.20148 0.96177 1.02820 1.05697 1.17589 0.81020 0.82586 0.81485 1.90672 1.68535 1.54358 1.33378 1.45907 1.15040 1.34855 1.40433 1.21233 0.92838 0.87756 0.96171 1.19138 0.90277 0.96422 0.95650 1.21463 1.00172 1.16177 1.20575 0.92185 1.25906 0.98405 0.99480 0.95586 1.70066 1.14892 1.41706 1.29948 0.85415 0.78268 0.78962 0.78211 1.19800 1.20489 1.18975 1.20728 0.95553 0.89255 0.94576 1.20590 0.97572 1.00712 0.95479 1.74147 0.98607 1.14415 1.21229 1.84865 1.10076 1.33485 1.66851 0.87100 0.87940 0.86702 0.78567 0.90550 0.92020 0.87625 0.81290 0.75709 0.93314 0.93476 0.97470 0.97322 0.92566 0.88581 0.90262 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.01 10.45 71.24 0.74 0.75 16 2 C 0.01 0.07 7.48 25.00 0.19 0.26 16 3 C -0.24 -3.32 10.03 22.51 0.23 -3.10 16 4 C 0.20 4.45 6.53 133.98 0.87 5.32 16 5 N -0.37 -9.78 2.93 -326.35 -0.95 -10.74 16 6 C 0.02 0.48 6.82 40.92 0.28 0.76 16 7 C -0.08 -1.43 9.78 71.24 0.70 -0.74 16 8 C -0.16 -4.51 10.44 23.62 0.25 -4.26 16 9 C -0.24 -7.82 6.29 -19.04 -0.12 -7.94 16 10 C 0.58 22.73 7.81 86.61 0.68 23.40 16 11 O -0.59 -25.72 14.81 -4.11 -0.06 -25.78 16 12 N -0.71 -27.94 5.55 -466.53 -2.59 -30.53 16 13 C 0.14 6.56 5.61 86.38 0.48 7.04 16 14 C 0.02 1.19 5.09 29.85 0.15 1.34 16 15 C -0.55 -31.24 9.11 25.60 0.23 -31.00 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 0.28 5.46 84.66 0.46 0.74 16 18 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 19 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.11 3.24 6.86 41.64 0.29 3.53 16 24 C -0.09 -2.08 9.01 71.24 0.64 -1.44 16 25 N -0.38 -8.40 11.85 -56.20 -0.67 -9.07 16 26 O 0.12 1.89 11.19 71.31 0.80 2.69 16 27 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.10 -0.22 8.14 -2.38 -0.02 -0.24 16 29 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.15 7.91 -2.39 -0.02 1.13 16 33 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.17 3.99 7.69 -2.91 -0.02 3.97 16 35 H 0.41 14.20 7.59 -92.71 -0.70 13.50 16 36 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 1.55 7.42 -2.39 -0.02 1.53 16 43 H 0.08 2.47 6.47 -2.39 -0.02 2.46 16 Total: -1.00 -75.66 369.82 5.24 -70.42 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.33 Total: 16.96 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 6.07 Total: -5.33 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -3.93 Total: -105.40 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.74 Total: -23.09 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -75.66 5.24 -70.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273154793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.949 kcal (2) G-P(sol) polarization free energy of solvation -75.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds