Wall clock time and date at job start Tue Mar 31 2020 11:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 110.88279 * 2 1 4 4 N 1.34776 * 120.00327 * 56.12300 * 3 2 1 5 5 O 1.21281 * 119.99853 * 236.11701 * 3 2 1 6 6 C 1.55149 * 111.00324 * 236.11843 * 2 1 3 7 7 C 1.54324 * 102.94198 * 206.38250 * 6 2 1 8 8 N 1.47021 * 107.26979 * 22.19586 * 7 6 2 9 9 C 1.34781 * 125.65016 * 181.01760 * 8 7 6 10 10 O 1.21581 * 120.00019 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99591 * 0.30567 * 9 8 7 12 12 C 1.39249 * 119.99787 * 175.43448 * 11 9 8 13 13 C 1.39472 * 119.83077 * 215.01947 * 12 11 9 14 14 C 1.36382 * 120.16683 * 179.75800 * 13 12 11 15 15 C 1.40870 * 119.82798 * 0.51319 * 14 13 12 16 16 C 1.41156 * 120.16412 * 179.71652 * 15 14 13 17 17 H 1.07998 * 119.99988 * 214.80514 * 16 15 14 18 18 C 1.39891 * 119.99704 * 34.80961 * 16 15 14 19 19 N 1.30872 * 120.00316 * 355.56227 * 18 16 15 20 20 Si 1.86805 * 119.99722 * 175.56329 * 18 16 15 21 21 H 1.48500 * 109.46900 * 59.99843 * 20 18 16 22 22 H 1.48495 * 109.47194 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47115 * 299.99869 * 20 18 16 24 24 C 1.40874 * 119.66927 * 359.74294 * 15 14 13 25 25 C 1.36370 * 119.82795 * 359.97438 * 24 15 14 26 26 C 1.47431 * 108.70379 * 1.28455 * 8 7 6 27 27 H 1.09005 * 109.47345 * 183.88227 * 1 2 3 28 28 H 1.09004 * 109.47432 * 303.87921 * 1 2 3 29 29 H 1.09004 * 109.47053 * 63.87944 * 1 2 3 30 30 H 0.97010 * 119.99766 * 359.97438 * 4 3 2 31 31 H 0.97000 * 120.00266 * 179.97438 * 4 3 2 32 32 H 1.09003 * 110.71995 * 88.02335 * 6 2 1 33 33 H 1.08990 * 110.87639 * 324.81836 * 6 2 1 34 34 H 1.09002 * 109.88768 * 262.77909 * 7 6 2 35 35 H 1.09002 * 109.88489 * 141.60995 * 7 6 2 36 36 H 0.96999 * 120.00170 * 355.42591 * 11 9 8 37 37 H 1.08004 * 119.92401 * 0.02562 * 13 12 11 38 38 H 1.07999 * 120.08828 * 180.27657 * 14 13 12 39 39 H 0.97002 * 120.00247 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.08149 * 180.02562 * 24 15 14 41 41 H 1.08005 * 119.91306 * 179.97438 * 25 24 15 42 42 H 1.09006 * 110.36228 * 94.47907 * 26 8 7 43 43 H 1.08994 * 110.36572 * 216.80232 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4080 0.0000 4 7 1.6996 2.2696 0.9690 5 8 2.8304 1.7658 -0.8720 6 6 2.0861 -0.8075 -1.2025 7 6 3.4678 -1.2730 -0.6968 8 7 3.4280 -1.2421 0.7725 9 6 4.4490 -1.5603 1.5929 10 8 4.3022 -1.4988 2.7982 11 7 5.6344 -1.9411 1.0769 12 6 6.7169 -2.1780 1.9202 13 6 8.0072 -1.8564 1.4997 14 6 9.0719 -2.0809 2.3219 15 6 8.8668 -2.6490 3.5946 16 6 9.9643 -2.8899 4.4490 17 1 9.9633 -3.7523 5.0992 18 6 11.0531 -2.0116 4.4536 19 7 11.0942 -1.0159 3.6053 20 14 12.4483 -2.2600 5.6707 21 1 13.0640 -3.5936 5.4524 22 1 13.4728 -1.2037 5.4715 23 1 11.9174 -2.1805 7.0552 24 6 7.5611 -2.9761 4.0100 25 6 6.5058 -2.7404 3.1790 26 6 2.0843 -0.8117 1.2001 27 1 -0.3634 -1.0253 0.0696 28 1 -0.3634 0.5729 0.8532 29 1 -0.3633 0.4525 -0.9227 30 1 1.0888 1.9834 1.6663 31 1 2.0456 3.1757 0.9692 32 1 2.1915 -0.1693 -2.0798 33 1 1.4483 -1.6630 -1.4240 34 1 4.2426 -0.5981 -1.0609 35 1 3.6659 -2.2881 -1.0410 36 1 5.7334 -2.0504 0.1182 37 1 8.1634 -1.4245 0.5221 38 1 10.0701 -1.8273 1.9968 39 1 11.8494 -0.4071 3.6082 40 1 7.3962 -3.4115 4.9844 41 1 5.5042 -2.9910 3.4959 42 1 1.4537 -1.6784 1.3986 43 1 2.1523 -0.1801 2.0858 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280571850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:00 Heat of formation + Delta-G solvation = -66.451537 kcal Electronic energy + Delta-G solvation = -26239.707163 eV Core-core repulsion = 22476.365545 eV Total energy + Delta-G solvation = -3763.341618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97865 -40.89115 -39.31424 -38.08213 -36.16768 -35.13925 -34.67290 -33.59324 -31.49003 -30.75196 -30.52258 -27.86839 -26.41778 -24.77524 -23.88634 -23.23177 -22.55454 -20.86661 -20.43885 -19.45717 -19.16007 -18.53434 -17.82745 -17.50976 -17.03637 -16.94750 -16.34459 -15.87035 -15.80071 -15.57537 -14.94498 -14.74344 -14.53418 -14.27262 -14.07053 -14.02686 -13.80781 -13.61827 -13.42903 -13.24065 -13.19400 -12.86276 -12.76441 -12.48540 -12.28533 -12.15231 -11.83624 -11.77610 -11.41136 -11.25504 -11.04245 -10.92622 -10.69036 -10.67924 -9.73267 -9.47435 -8.69750 -8.49346 -6.32241 0.83394 1.13649 1.39562 1.48217 1.51970 1.54883 1.58359 2.12989 2.24984 2.52357 2.81246 2.99065 3.30748 3.50277 3.68283 3.78545 4.05530 4.22718 4.33517 4.36539 4.46777 4.54136 4.63991 4.72389 4.85760 4.89713 4.93671 4.96783 5.08422 5.13574 5.15120 5.23446 5.31686 5.39211 5.42933 5.67822 5.81425 5.83452 6.03328 6.10376 6.18768 6.38778 6.39126 6.67892 6.94166 6.97542 7.01040 7.27824 7.56098 8.43373 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.002654 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.190577 B =10548.465683 C =10728.723774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C 0.525 3.475 4 N -0.840 5.840 5 O -0.584 6.584 6 C -0.099 4.099 7 C 0.091 3.909 8 N -0.636 5.636 9 C 0.710 3.290 10 O -0.619 6.619 11 N -0.659 5.659 12 C 0.038 3.962 13 C -0.123 4.123 14 C -0.157 4.157 15 C 0.067 3.933 16 C -0.498 4.498 17 H 0.074 0.926 18 C 0.026 3.974 19 N -0.844 5.844 20 Si 0.990 3.010 21 H -0.257 1.257 22 H -0.269 1.269 23 H -0.265 1.265 24 C -0.217 4.217 25 C -0.095 4.095 26 C 0.135 3.865 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.416 0.584 31 H 0.406 0.594 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.409 0.591 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.284 0.716 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.675 2.713 -9.967 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.096 4.096 3 C 0.310 3.690 4 N -0.403 5.403 5 O -0.464 6.464 6 C -0.137 4.137 7 C -0.032 4.032 8 N -0.375 5.375 9 C 0.412 3.588 10 O -0.500 6.500 11 N -0.306 5.306 12 C -0.056 4.056 13 C -0.143 4.143 14 C -0.177 4.177 15 C 0.065 3.935 16 C -0.529 4.529 17 H 0.093 0.907 18 C -0.185 4.185 19 N -0.472 5.472 20 Si 0.810 3.190 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.189 1.189 24 C -0.237 4.237 25 C -0.115 4.115 26 C 0.012 3.988 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.247 0.753 31 H 0.237 0.763 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.144 3.011 -9.767 23.484 hybrid contribution 0.932 0.472 0.568 1.189 sum -20.212 3.483 -9.199 22.478 Atomic orbital electron populations 1.21772 0.87582 1.05301 1.03988 1.22044 0.99756 0.90460 0.97306 1.20676 0.79473 0.88037 0.80771 1.43768 1.50995 1.15931 1.29595 1.90720 1.37048 1.79429 1.39187 1.22628 0.93880 1.00446 0.96728 1.22253 1.00250 1.02105 0.78564 1.47555 1.11781 1.71086 1.07042 1.15663 0.80372 0.78296 0.84461 1.90869 1.82758 1.62058 1.14323 1.41925 1.08298 1.70453 1.09903 1.17131 0.86029 1.08818 0.93642 1.20505 0.91456 1.02142 1.00198 1.21151 0.98273 1.04586 0.93685 1.18024 0.92410 0.91091 0.92012 1.19695 1.01907 1.10248 1.21008 0.90736 1.26764 1.00777 0.93490 0.97492 1.69832 1.30817 1.13298 1.33229 0.85139 0.76444 0.79161 0.78208 1.18131 1.19350 1.18922 1.20933 0.92659 1.10491 0.99615 1.20506 0.97953 0.98880 0.94200 1.22362 0.81570 0.98825 0.96047 0.88748 0.90275 0.90625 0.75318 0.76342 0.89129 0.86264 0.92793 0.89391 0.75426 0.86398 0.86291 0.90532 0.88317 0.87310 0.88028 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 8.58 71.98 0.62 -0.13 16 2 C -0.09 -1.30 0.81 -51.46 -0.04 -1.34 16 3 C 0.53 10.72 6.71 87.66 0.59 11.30 16 4 N -0.84 -11.75 8.72 -173.53 -1.51 -13.27 16 5 O -0.58 -17.26 16.42 -3.03 -0.05 -17.31 16 6 C -0.10 -1.36 5.61 31.78 0.18 -1.18 16 7 C 0.09 1.83 5.85 86.73 0.51 2.33 16 8 N -0.64 -17.13 3.31 -829.30 -2.74 -19.87 16 9 C 0.71 26.87 8.32 179.05 1.49 28.36 16 10 O -0.62 -28.62 14.01 -3.97 -0.06 -28.68 16 11 N -0.66 -24.92 5.26 -316.79 -1.67 -26.58 16 12 C 0.04 1.77 6.31 38.56 0.24 2.01 16 13 C -0.12 -5.88 9.90 22.13 0.22 -5.66 16 14 C -0.16 -8.55 8.62 22.48 0.19 -8.36 16 15 C 0.07 3.82 5.55 -21.27 -0.12 3.70 16 16 C -0.50 -28.03 9.02 23.39 0.21 -27.82 16 17 H 0.07 4.02 7.85 -2.91 -0.02 4.00 16 18 C 0.03 1.39 5.42 85.24 0.46 1.85 16 19 N -0.84 -45.97 10.60 21.82 0.23 -45.74 16 20 Si 0.99 40.09 29.56 68.60 2.03 42.11 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 C -0.22 -11.70 9.74 22.48 0.22 -11.48 16 25 C -0.10 -4.83 8.61 22.13 0.19 -4.64 16 26 C 0.13 2.62 5.84 86.93 0.51 3.13 16 27 H 0.09 0.26 8.07 -2.38 -0.02 0.24 16 28 H 0.08 0.25 7.37 -2.38 -0.02 0.23 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.42 3.26 8.06 -92.70 -0.75 2.52 16 31 H 0.41 5.43 8.93 -92.71 -0.83 4.61 16 32 H 0.09 1.40 7.41 -2.39 -0.02 1.39 16 33 H 0.12 0.88 8.04 -2.39 -0.02 0.86 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.41 12.49 7.81 -92.71 -0.72 11.77 16 37 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 38 H 0.12 6.73 6.13 -2.91 -0.02 6.71 16 39 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 40 H 0.10 5.07 8.06 -2.91 -0.02 5.05 16 41 H 0.11 5.48 6.22 -2.91 -0.02 5.46 16 42 H 0.10 1.54 7.99 -2.38 -0.02 1.52 16 43 H 0.07 1.50 7.91 -2.39 -0.02 1.48 16 Total: -1.00 -79.30 354.72 0.48 -78.83 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -1.22 Total: 38.42 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.47 Total: -7.91 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -5.69 Total: -105.47 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.11 Total: -45.98 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Total: -79.30 0.48 -78.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280571850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.377 kcal (2) G-P(sol) polarization free energy of solvation -79.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds