Wall clock time and date at job start Tue Mar 31 2020 11:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 110.28688 * 2 1 4 4 N 1.34777 * 120.00076 * 300.69315 * 3 2 1 5 5 O 1.21283 * 119.99875 * 120.69996 * 3 2 1 6 6 C 1.54616 * 110.32475 * 122.12990 * 2 1 3 7 7 C 1.55112 * 102.75843 * 97.21184 * 6 2 1 8 8 N 1.48114 * 103.31607 * 37.26098 * 7 6 2 9 9 C 1.34772 * 127.03557 * 140.72824 * 8 7 6 10 10 O 1.21579 * 120.00601 * 180.02562 * 9 8 7 11 11 N 1.34783 * 119.99925 * 0.04730 * 9 8 7 12 12 C 1.39239 * 119.99959 * 175.31894 * 11 9 8 13 13 C 1.39478 * 119.83093 * 215.22800 * 12 11 9 14 14 C 1.36378 * 120.16756 * 179.75982 * 13 12 11 15 15 C 1.40868 * 119.82461 * 0.51521 * 14 13 12 16 16 C 1.41165 * 120.16259 * 179.75952 * 15 14 13 17 17 H 1.07994 * 120.00127 * 148.75305 * 16 15 14 18 18 C 1.39898 * 119.99666 * 328.75461 * 16 15 14 19 19 N 1.30878 * 119.99358 * 167.76308 * 18 16 15 20 20 Si 1.86796 * 120.00419 * 347.76851 * 18 16 15 21 21 H 1.48503 * 109.47231 * 92.59424 * 20 18 16 22 22 H 1.48496 * 109.47240 * 212.59898 * 20 18 16 23 23 H 1.48505 * 109.46899 * 332.59616 * 20 18 16 24 24 C 1.40862 * 119.67744 * 359.74170 * 15 14 13 25 25 C 1.36372 * 119.82531 * 359.97438 * 24 15 14 26 26 C 1.47486 * 105.93442 * 320.76914 * 8 7 6 27 27 H 1.08996 * 109.46951 * 59.30163 * 1 2 3 28 28 H 1.08999 * 109.46974 * 179.29868 * 1 2 3 29 29 H 1.09000 * 109.47384 * 299.30256 * 1 2 3 30 30 H 0.97002 * 119.99636 * 0.02562 * 4 3 2 31 31 H 0.96996 * 120.00277 * 179.72616 * 4 3 2 32 32 H 1.09003 * 110.73927 * 215.48551 * 6 2 1 33 33 H 1.09000 * 110.74269 * 338.81123 * 6 2 1 34 34 H 1.09007 * 110.58412 * 278.82767 * 7 6 2 35 35 H 1.09001 * 110.82780 * 155.81809 * 7 6 2 36 36 H 0.96998 * 119.99453 * 355.31978 * 11 9 8 37 37 H 1.08002 * 119.91900 * 0.02562 * 13 12 11 38 38 H 1.07998 * 120.08522 * 180.25481 * 14 13 12 39 39 H 0.97004 * 119.99903 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.08747 * 179.97438 * 24 15 14 41 41 H 1.08011 * 119.91783 * 180.02562 * 25 24 15 42 42 H 1.09002 * 109.90895 * 266.08683 * 26 8 7 43 43 H 1.08999 * 109.91769 * 144.80637 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4135 0.0000 4 7 1.7274 2.2522 -1.0037 5 8 2.7658 1.7964 0.9031 6 6 2.0671 -0.7711 1.2278 7 6 2.3642 -2.1779 0.6458 8 7 2.8826 -1.8835 -0.7101 9 6 3.8948 -2.5068 -1.3451 10 8 4.2167 -2.1582 -2.4645 11 7 4.5500 -3.5170 -0.7395 12 6 5.5297 -4.2249 -1.4307 13 6 5.6872 -5.5923 -1.2048 14 6 6.6412 -6.2933 -1.8817 15 6 7.4760 -5.6308 -2.8029 16 6 8.4692 -6.3485 -3.5037 17 1 8.7526 -6.0449 -4.5006 18 6 9.0864 -7.4530 -2.9067 19 7 9.8240 -8.2590 -3.6272 20 14 8.8576 -7.7774 -1.0814 21 1 7.7074 -8.6954 -0.8821 22 1 10.0886 -8.3994 -0.5311 23 1 8.5948 -6.4951 -0.3799 24 6 7.3144 -4.2486 -3.0217 25 6 6.3521 -3.5622 -2.3417 26 6 2.0651 -0.7681 -1.2228 27 1 -0.3633 0.5246 -0.8836 28 1 -0.3633 -1.0276 -0.0126 29 1 -0.3634 0.5030 0.8962 30 1 1.1567 1.9460 -1.7259 31 1 2.0604 3.1632 -1.0017 32 1 2.9795 -0.3092 1.6049 33 1 1.3099 -0.8272 2.0099 34 1 1.4505 -2.7695 0.5881 35 1 3.1173 -2.6929 1.2421 36 1 4.3390 -3.7508 0.1780 37 1 5.0491 -6.0980 -0.4952 38 1 6.7593 -7.3528 -1.7087 39 1 10.2522 -9.0246 -3.2133 40 1 7.9510 -3.7340 -3.7262 41 1 6.2267 -2.5025 -2.5086 42 1 1.2332 -1.1570 -1.8101 43 1 2.6795 -0.1087 -1.8358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280571851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:04 Heat of formation + Delta-G solvation = -36.704722 kcal Electronic energy + Delta-G solvation = -26128.147138 eV Core-core repulsion = 22366.095439 eV Total energy + Delta-G solvation = -3762.051700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01306 -39.74212 -38.05626 -37.03348 -34.50360 -34.25590 -33.22985 -32.62223 -29.89454 -29.70956 -29.54130 -27.00588 -25.07770 -23.88166 -22.78973 -21.94262 -20.70981 -19.72496 -19.64624 -18.42509 -17.49879 -17.34957 -16.81958 -16.66069 -16.12120 -15.39566 -15.06177 -14.97056 -14.54353 -14.36798 -13.89224 -13.69428 -13.34343 -13.25386 -12.98779 -12.80497 -12.67698 -12.47704 -12.36274 -12.28307 -11.93312 -11.86650 -11.45721 -11.13122 -10.86726 -10.80430 -10.51374 -10.23702 -10.16216 -10.05002 -9.76795 -9.64178 -9.10502 -9.03133 -8.74000 -7.76341 -7.11432 -6.88714 -4.39978 2.24959 2.45241 2.67095 2.77044 3.09337 3.12347 3.22856 3.32458 3.51471 3.91377 4.00518 4.09725 4.31072 4.38490 4.56300 4.63177 4.79632 4.94124 5.07699 5.22508 5.29962 5.40495 5.43875 5.45141 5.53283 5.62717 5.84474 5.94425 6.05303 6.13768 6.41047 6.49589 6.72459 6.78378 6.88970 6.93394 7.03242 7.27463 7.41976 7.61061 7.70881 7.88569 7.89010 8.16523 8.27262 8.38228 8.66182 8.82890 8.93846 10.14026 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031172 B = 0.002680 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.034927 B =10445.605836 C =10781.173254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 C 0.533 3.467 4 N -0.853 5.853 5 O -0.537 6.537 6 C -0.116 4.116 7 C 0.100 3.900 8 N -0.642 5.642 9 C 0.719 3.281 10 O -0.574 6.574 11 N -0.664 5.664 12 C 0.013 3.987 13 C -0.091 4.091 14 C -0.227 4.227 15 C 0.087 3.913 16 C -0.443 4.443 17 H 0.091 0.909 18 C 0.080 3.920 19 N -0.816 5.816 20 Si 0.916 3.084 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.243 1.243 24 C -0.196 4.196 25 C -0.069 4.069 26 C 0.140 3.860 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.402 0.598 31 H 0.403 0.597 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.392 0.608 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.284 0.716 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.864 13.996 9.673 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 C 0.317 3.683 4 N -0.416 5.416 5 O -0.412 6.412 6 C -0.154 4.154 7 C -0.023 4.023 8 N -0.382 5.382 9 C 0.422 3.578 10 O -0.450 6.450 11 N -0.310 5.310 12 C -0.079 4.079 13 C -0.111 4.111 14 C -0.247 4.247 15 C 0.084 3.916 16 C -0.471 4.471 17 H 0.109 0.891 18 C -0.138 4.138 19 N -0.441 5.441 20 Si 0.744 3.256 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.166 1.166 24 C -0.216 4.216 25 C -0.089 4.089 26 C 0.015 3.985 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.231 0.769 31 H 0.234 0.766 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.226 0.774 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.094 0.906 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.905 14.047 9.352 25.341 hybrid contribution -0.370 -0.224 0.787 0.898 sum -19.275 13.823 10.139 25.795 Atomic orbital electron populations 1.21872 0.91068 1.03578 1.02760 1.21757 0.97737 0.92457 0.98469 1.20269 0.79406 0.87195 0.81384 1.43840 1.54995 1.16168 1.26642 1.90747 1.36906 1.77354 1.36226 1.22799 1.03232 0.94012 0.95395 1.22541 0.99409 0.96964 0.83429 1.47789 1.35139 1.37254 1.18028 1.15410 0.78380 0.80290 0.83683 1.90915 1.68263 1.67362 1.18507 1.42042 1.39054 1.34502 1.15412 1.16929 0.95860 0.90348 1.04790 1.20088 0.99189 0.91536 1.00303 1.20596 1.00558 0.98353 1.05146 1.17803 0.91657 0.91666 0.90481 1.19474 1.16599 1.08119 1.02957 0.89125 1.26179 0.93085 0.93473 1.01070 1.69685 1.24820 1.11277 1.38276 0.86263 0.76521 0.80352 0.82473 1.19843 1.22201 1.16626 1.20739 1.01908 0.93827 1.05149 1.20564 0.93141 0.99189 0.96007 1.21784 0.94709 0.88115 0.93855 0.91749 0.90703 0.91474 0.76923 0.76637 0.88742 0.89402 0.90792 0.90165 0.77384 0.88678 0.87868 0.90543 0.87843 0.86825 0.90640 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 8.11 37.16 0.30 -0.31 16 2 C -0.10 -0.77 0.80 -154.29 -0.12 -0.90 16 3 C 0.53 5.10 6.58 -10.99 -0.07 5.03 16 4 N -0.85 -5.03 8.67 31.22 0.27 -4.76 16 5 O -0.54 -7.46 16.27 5.55 0.09 -7.37 16 6 C -0.12 -0.95 5.98 -24.76 -0.15 -1.10 16 7 C 0.10 0.87 6.98 -2.04 -0.01 0.86 16 8 N -0.64 -8.17 3.29 -175.37 -0.58 -8.75 16 9 C 0.72 12.70 8.37 -86.92 -0.73 11.97 16 10 O -0.57 -12.43 14.10 5.30 0.07 -12.36 16 11 N -0.66 -11.52 5.27 -14.10 -0.07 -11.60 16 12 C 0.01 0.29 6.30 -83.57 -0.53 -0.24 16 13 C -0.09 -1.95 9.90 -39.79 -0.39 -2.35 16 14 C -0.23 -5.49 6.93 -39.26 -0.27 -5.76 16 15 C 0.09 2.27 5.13 -106.80 -0.55 1.72 16 16 C -0.44 -12.21 9.59 -37.85 -0.36 -12.57 16 17 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 18 C 0.08 2.12 5.47 -17.34 -0.09 2.02 16 19 N -0.82 -22.10 13.93 55.55 0.77 -21.33 16 20 Si 0.92 20.98 24.40 -169.99 -4.15 16.83 16 21 H -0.27 -5.99 6.67 56.52 0.38 -5.61 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.24 -5.66 6.67 56.52 0.38 -5.28 16 24 C -0.20 -4.85 9.74 -39.26 -0.38 -5.23 16 25 C -0.07 -1.61 8.61 -39.79 -0.34 -1.96 16 26 C 0.14 1.40 6.24 -2.98 -0.02 1.38 16 27 H 0.06 0.19 7.58 -51.93 -0.39 -0.20 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.40 1.29 8.25 -40.82 -0.34 0.95 16 31 H 0.40 2.06 8.93 -40.82 -0.36 1.70 16 32 H 0.09 1.03 6.89 -51.93 -0.36 0.67 16 33 H 0.09 0.53 7.85 -51.93 -0.41 0.12 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.65 6.77 -51.93 -0.35 0.30 16 36 H 0.39 5.39 7.13 -40.82 -0.29 5.10 16 37 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.10 2.46 4.40 -52.49 -0.23 2.23 16 39 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 40 H 0.10 2.44 8.06 -52.49 -0.42 2.02 16 41 H 0.11 2.66 6.22 -52.48 -0.33 2.34 16 42 H 0.08 0.63 7.68 -51.93 -0.40 0.24 16 43 H 0.08 0.92 7.53 -51.93 -0.39 0.52 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -34.94 347.24 -7.66 -42.59 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.57 Total: 8.94 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.73 Total: -7.43 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.39 Total: -46.44 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.17 Total: -19.73 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.15 Total: 16.83 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.94 -7.66 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280571851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.886 kcal (2) G-P(sol) polarization free energy of solvation -34.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds