Wall clock time and date at job start Tue Mar 31 2020 11:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 110.28688 * 2 1 4 4 N 1.34777 * 120.00076 * 300.69315 * 3 2 1 5 5 O 1.21283 * 119.99875 * 120.69996 * 3 2 1 6 6 C 1.54616 * 110.32475 * 122.12990 * 2 1 3 7 7 C 1.55112 * 102.75843 * 97.21184 * 6 2 1 8 8 N 1.48114 * 103.31607 * 37.26098 * 7 6 2 9 9 C 1.34772 * 127.03557 * 140.72824 * 8 7 6 10 10 O 1.21579 * 120.00601 * 180.02562 * 9 8 7 11 11 N 1.34783 * 119.99925 * 0.04730 * 9 8 7 12 12 C 1.39239 * 119.99959 * 175.31894 * 11 9 8 13 13 C 1.39478 * 119.83093 * 215.22800 * 12 11 9 14 14 C 1.36378 * 120.16756 * 179.75982 * 13 12 11 15 15 C 1.40868 * 119.82461 * 0.51521 * 14 13 12 16 16 C 1.41165 * 120.16259 * 179.75952 * 15 14 13 17 17 H 1.07994 * 120.00127 * 148.75305 * 16 15 14 18 18 C 1.39898 * 119.99666 * 328.75461 * 16 15 14 19 19 N 1.30878 * 119.99358 * 167.76308 * 18 16 15 20 20 Si 1.86796 * 120.00419 * 347.76851 * 18 16 15 21 21 H 1.48503 * 109.47231 * 92.59424 * 20 18 16 22 22 H 1.48496 * 109.47240 * 212.59898 * 20 18 16 23 23 H 1.48505 * 109.46899 * 332.59616 * 20 18 16 24 24 C 1.40862 * 119.67744 * 359.74170 * 15 14 13 25 25 C 1.36372 * 119.82531 * 359.97438 * 24 15 14 26 26 C 1.47486 * 105.93442 * 320.76914 * 8 7 6 27 27 H 1.08996 * 109.46951 * 59.30163 * 1 2 3 28 28 H 1.08999 * 109.46974 * 179.29868 * 1 2 3 29 29 H 1.09000 * 109.47384 * 299.30256 * 1 2 3 30 30 H 0.97002 * 119.99636 * 0.02562 * 4 3 2 31 31 H 0.96996 * 120.00277 * 179.72616 * 4 3 2 32 32 H 1.09003 * 110.73927 * 215.48551 * 6 2 1 33 33 H 1.09000 * 110.74269 * 338.81123 * 6 2 1 34 34 H 1.09007 * 110.58412 * 278.82767 * 7 6 2 35 35 H 1.09001 * 110.82780 * 155.81809 * 7 6 2 36 36 H 0.96998 * 119.99453 * 355.31978 * 11 9 8 37 37 H 1.08002 * 119.91900 * 0.02562 * 13 12 11 38 38 H 1.07998 * 120.08522 * 180.25481 * 14 13 12 39 39 H 0.97004 * 119.99903 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.08747 * 179.97438 * 24 15 14 41 41 H 1.08011 * 119.91783 * 180.02562 * 25 24 15 42 42 H 1.09002 * 109.90895 * 266.08683 * 26 8 7 43 43 H 1.08999 * 109.91769 * 144.80637 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4135 0.0000 4 7 1.7274 2.2522 -1.0037 5 8 2.7658 1.7964 0.9031 6 6 2.0671 -0.7711 1.2278 7 6 2.3642 -2.1779 0.6458 8 7 2.8826 -1.8835 -0.7101 9 6 3.8948 -2.5068 -1.3451 10 8 4.2167 -2.1582 -2.4645 11 7 4.5500 -3.5170 -0.7395 12 6 5.5297 -4.2249 -1.4307 13 6 5.6872 -5.5923 -1.2048 14 6 6.6412 -6.2933 -1.8817 15 6 7.4760 -5.6308 -2.8029 16 6 8.4692 -6.3485 -3.5037 17 1 8.7526 -6.0449 -4.5006 18 6 9.0864 -7.4530 -2.9067 19 7 9.8240 -8.2590 -3.6272 20 14 8.8576 -7.7774 -1.0814 21 1 7.7074 -8.6954 -0.8821 22 1 10.0886 -8.3994 -0.5311 23 1 8.5948 -6.4951 -0.3799 24 6 7.3144 -4.2486 -3.0217 25 6 6.3521 -3.5622 -2.3417 26 6 2.0651 -0.7681 -1.2228 27 1 -0.3633 0.5246 -0.8836 28 1 -0.3633 -1.0276 -0.0126 29 1 -0.3634 0.5030 0.8962 30 1 1.1567 1.9460 -1.7259 31 1 2.0604 3.1632 -1.0017 32 1 2.9795 -0.3092 1.6049 33 1 1.3099 -0.8272 2.0099 34 1 1.4505 -2.7695 0.5881 35 1 3.1173 -2.6929 1.2421 36 1 4.3390 -3.7508 0.1780 37 1 5.0491 -6.0980 -0.4952 38 1 6.7593 -7.3528 -1.7087 39 1 10.2522 -9.0246 -3.2133 40 1 7.9510 -3.7340 -3.7262 41 1 6.2267 -2.5025 -2.5086 42 1 1.2332 -1.1570 -1.8101 43 1 2.6795 -0.1087 -1.8358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280571851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:03 Heat of formation + Delta-G solvation = -63.782377 kcal Electronic energy + Delta-G solvation = -26129.321314 eV Core-core repulsion = 22366.095439 eV Total energy + Delta-G solvation = -3763.225875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.95032 -40.96989 -39.51993 -38.24674 -36.17904 -35.13561 -34.80448 -33.60651 -31.73895 -31.29948 -30.43464 -27.87833 -26.42542 -25.08658 -23.74174 -23.48976 -22.46705 -21.08250 -20.34568 -19.58762 -19.27050 -18.48670 -17.94295 -17.50220 -17.17446 -17.00403 -16.38828 -16.04113 -15.74395 -15.55425 -15.22943 -15.03400 -14.71011 -14.43174 -14.28794 -14.13790 -13.89085 -13.77760 -13.54248 -13.36462 -13.01063 -12.69216 -12.62782 -12.56383 -12.39022 -12.07778 -11.97123 -11.70444 -11.62719 -11.30235 -10.98351 -10.93244 -10.75495 -10.70398 -9.80221 -9.61411 -8.90839 -8.84747 -6.43680 0.65674 0.86441 1.27978 1.40594 1.46663 1.53265 1.60957 2.07463 2.16066 2.52355 2.65715 2.99159 3.30992 3.49404 3.51660 3.82446 4.07321 4.18789 4.23960 4.31047 4.33451 4.49415 4.59409 4.66659 4.72704 4.83833 4.90547 4.93083 4.94247 4.99815 5.09443 5.16193 5.22487 5.35944 5.38561 5.49105 5.68573 5.82695 5.84966 5.93451 6.07634 6.25543 6.37742 6.38972 6.73079 6.81532 6.93955 7.27603 7.55440 8.23705 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031172 B = 0.002680 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.034927 B =10445.605836 C =10781.173254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C 0.525 3.475 4 N -0.836 5.836 5 O -0.588 6.588 6 C -0.114 4.114 7 C 0.096 3.904 8 N -0.639 5.639 9 C 0.714 3.286 10 O -0.622 6.622 11 N -0.657 5.657 12 C 0.040 3.960 13 C -0.087 4.087 14 C -0.230 4.230 15 C 0.067 3.933 16 C -0.482 4.482 17 H 0.051 0.949 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.973 3.027 21 H -0.250 1.250 22 H -0.282 1.282 23 H -0.248 1.248 24 C -0.209 4.209 25 C -0.081 4.081 26 C 0.134 3.866 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.417 0.583 31 H 0.407 0.593 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.414 0.586 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.293 0.707 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.799 13.980 12.675 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C 0.310 3.690 4 N -0.400 5.400 5 O -0.468 6.468 6 C -0.153 4.153 7 C -0.025 4.025 8 N -0.377 5.377 9 C 0.417 3.583 10 O -0.502 6.502 11 N -0.306 5.306 12 C -0.054 4.054 13 C -0.107 4.107 14 C -0.249 4.249 15 C 0.064 3.936 16 C -0.512 4.512 17 H 0.069 0.931 18 C -0.173 4.173 19 N -0.486 5.486 20 Si 0.796 3.204 21 H -0.175 1.175 22 H -0.209 1.209 23 H -0.172 1.172 24 C -0.229 4.229 25 C -0.101 4.101 26 C 0.011 3.989 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.248 0.752 31 H 0.239 0.761 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.252 0.748 37 H 0.160 0.840 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.928 14.064 12.365 29.604 hybrid contribution 0.643 0.056 -0.155 0.664 sum -22.285 14.120 12.210 29.071 Atomic orbital electron populations 1.21915 0.87927 1.05016 1.04001 1.21734 0.99921 0.90622 0.97020 1.20706 0.78804 0.88281 0.81214 1.43752 1.54127 1.16061 1.26011 1.90730 1.39280 1.78453 1.38351 1.22790 1.02819 0.93411 0.96234 1.22897 1.00851 0.97740 0.81041 1.47796 1.33617 1.36871 1.19439 1.15574 0.79136 0.80232 0.83408 1.90890 1.69828 1.68673 1.20820 1.41847 1.38202 1.34261 1.16253 1.17051 0.94898 0.90751 1.02737 1.20446 0.98656 0.91292 1.00341 1.20766 1.00579 0.98911 1.04692 1.17891 0.92077 0.91980 0.91650 1.19421 1.19165 1.10332 1.02258 0.93107 1.26934 0.92441 0.92814 1.05131 1.69721 1.26408 1.12338 1.40094 0.85403 0.77696 0.80244 0.77030 1.17479 1.20947 1.17169 1.20823 1.02596 0.93907 1.05618 1.20638 0.93501 0.99118 0.96853 1.22039 0.94610 0.87376 0.94910 0.90021 0.89148 0.90851 0.75154 0.76128 0.91836 0.86500 0.87456 0.89376 0.74836 0.83965 0.87228 0.89643 0.88534 0.87248 0.88222 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.59 8.11 71.98 0.58 -0.01 16 2 C -0.09 -1.11 0.80 -52.04 -0.04 -1.15 16 3 C 0.53 9.28 6.58 87.66 0.58 9.86 16 4 N -0.84 -8.46 8.67 -173.53 -1.50 -9.97 16 5 O -0.59 -16.22 16.27 -3.04 -0.05 -16.27 16 6 C -0.11 -1.52 5.98 31.87 0.19 -1.33 16 7 C 0.10 1.27 6.98 86.79 0.61 1.88 16 8 N -0.64 -14.47 3.29 -827.01 -2.72 -17.19 16 9 C 0.71 23.79 8.37 179.05 1.50 25.29 16 10 O -0.62 -26.66 14.10 -3.96 -0.06 -26.72 16 11 N -0.66 -20.81 5.27 -316.79 -1.67 -22.48 16 12 C 0.04 1.62 6.30 38.56 0.24 1.86 16 13 C -0.09 -3.45 9.90 22.13 0.22 -3.23 16 14 C -0.23 -10.76 6.93 22.48 0.16 -10.60 16 15 C 0.07 3.56 5.13 -21.27 -0.11 3.45 16 16 C -0.48 -28.09 9.59 23.39 0.22 -27.86 16 17 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 18 C 0.04 2.18 5.47 85.24 0.47 2.64 16 19 N -0.86 -48.29 13.93 21.82 0.30 -47.98 16 20 Si 0.97 42.66 24.40 68.60 1.67 44.34 16 21 H -0.25 -10.00 6.67 99.48 0.66 -9.33 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.25 -10.97 6.67 99.48 0.66 -10.31 16 24 C -0.21 -10.70 9.74 22.48 0.22 -10.48 16 25 C -0.08 -3.79 8.61 22.13 0.19 -3.60 16 26 C 0.13 2.33 6.24 86.53 0.54 2.87 16 27 H 0.08 0.11 7.58 -2.39 -0.02 0.09 16 28 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.42 1.67 8.25 -92.71 -0.77 0.90 16 31 H 0.41 3.68 8.93 -92.71 -0.83 2.85 16 32 H 0.06 1.29 6.89 -2.39 -0.02 1.28 16 33 H 0.12 0.90 7.85 -2.39 -0.02 0.88 16 34 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.09 1.04 6.77 -2.39 -0.02 1.03 16 36 H 0.41 9.57 7.13 -92.71 -0.66 8.91 16 37 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 38 H 0.11 4.97 4.40 -2.91 -0.01 4.96 16 39 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 40 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 41 H 0.11 5.22 6.22 -2.91 -0.02 5.21 16 42 H 0.10 1.29 7.68 -2.39 -0.02 1.27 16 43 H 0.06 1.26 7.53 -2.39 -0.02 1.24 16 Total: -1.00 -81.39 347.24 0.28 -81.11 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -1.26 Total: 25.58 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 5.56 Total: -10.42 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -5.59 Total: -97.62 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.11 Total: -42.98 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.67 Total: 44.34 kcal Total: -81.39 0.28 -81.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280571851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.323 kcal (2) G-P(sol) polarization free energy of solvation -81.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds