Wall clock time and date at job start Tue Mar 31 2020 11:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.33584 * 125.73773 * 2 1 4 4 C 1.34882 * 109.83461 * 180.25889 * 3 2 1 5 5 C 1.43198 * 125.76129 * 179.80396 * 4 3 2 6 6 N 4.69758 * 150.57855 * 359.60015 * 2 1 3 7 7 C 1.36108 * 108.47449 * 359.76922 * 4 3 2 8 8 C 1.36737 * 125.73639 * 179.86059 * 2 1 3 9 9 C 1.47478 * 126.70180 * 0.02562 * 8 2 1 10 10 O 1.21603 * 120.00113 * 359.71057 * 9 8 2 11 11 N 1.34780 * 120.00435 * 179.71164 * 9 8 2 12 12 C 1.46495 * 120.00145 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47273 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.49452 * 54.93245 * 13 12 11 15 15 C 1.53033 * 109.50202 * 174.99893 * 13 12 11 16 16 C 1.53039 * 109.54135 * 181.31824 * 15 13 12 17 17 C 1.53193 * 109.31182 * 298.63679 * 16 15 13 18 18 N 1.46928 * 108.77558 * 54.63322 * 17 16 15 19 19 C 1.36939 * 120.62948 * 126.36714 * 18 17 16 20 20 H 1.07998 * 119.99697 * 331.91778 * 19 18 17 21 21 C 1.38812 * 119.99948 * 151.91586 * 19 18 17 22 22 N 1.31621 * 119.99722 * 343.21501 * 21 19 18 23 23 Si 1.86797 * 120.00136 * 163.21536 * 21 19 18 24 24 H 1.48497 * 109.47049 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47033 * 119.99925 * 23 21 19 26 26 H 1.48503 * 109.47061 * 240.00183 * 23 21 19 27 27 C 1.46924 * 118.73966 * 306.64301 * 18 17 16 28 28 H 1.09000 * 109.46975 * 270.13940 * 1 2 3 29 29 H 1.08998 * 109.47056 * 30.14135 * 1 2 3 30 30 H 1.09000 * 109.47085 * 150.13738 * 1 2 3 31 31 H 1.07999 * 126.71316 * 179.97438 * 7 4 3 32 32 H 0.96999 * 119.99764 * 359.97438 * 11 9 8 33 33 H 1.08999 * 109.47273 * 60.00148 * 12 11 9 34 34 H 1.08998 * 109.47288 * 300.00079 * 12 11 9 35 35 H 1.09005 * 109.45711 * 61.29310 * 15 13 12 36 36 H 1.08998 * 109.45089 * 301.33651 * 15 13 12 37 37 H 1.08999 * 109.49578 * 178.68575 * 16 15 13 38 38 H 1.08995 * 109.52302 * 58.60070 * 16 15 13 39 39 H 1.08996 * 109.58580 * 294.84971 * 17 16 15 40 40 H 1.09000 * 109.70506 * 174.49058 * 17 16 15 41 41 H 0.97006 * 119.99968 * 180.02562 * 22 21 19 42 42 H 1.08996 * 109.58947 * 173.14529 * 27 18 17 43 43 H 1.09007 * 109.58852 * 293.56956 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2872 1.0843 0.0000 4 6 3.5844 0.7147 -0.0057 5 6 4.7076 1.6029 -0.0115 6 7 5.5987 2.3075 -0.0161 7 6 3.6454 -0.6450 -0.0043 8 6 2.3056 -1.1099 0.0027 9 6 1.8606 -2.5159 0.0056 10 8 0.6731 -2.7779 0.0111 11 7 2.7700 -3.5107 0.0022 12 6 2.3279 -4.9073 0.0057 13 6 3.5492 -5.8289 0.0001 14 1 4.1996 -5.5761 0.8375 15 6 3.0921 -7.2837 0.1294 16 6 4.3146 -8.2039 0.1570 17 6 5.0900 -8.0556 -1.1559 18 7 5.4080 -6.6357 -1.3596 19 6 6.6976 -6.2351 -1.5866 20 1 7.5200 -6.8125 -1.1908 21 6 6.9479 -5.0868 -2.3253 22 7 6.0004 -4.5691 -3.0781 23 14 8.6293 -4.2764 -2.2512 24 1 9.5108 -5.0480 -1.3386 25 1 9.2259 -4.2492 -3.6108 26 1 8.4875 -2.8876 -1.7448 27 6 4.3168 -5.6531 -1.3090 28 1 -0.3633 0.0025 1.0277 29 1 -0.3633 0.8887 -0.5160 30 1 -0.3633 -0.8912 -0.5117 31 1 4.5393 -1.2511 -0.0082 32 1 3.7172 -3.3018 -0.0025 33 1 1.7242 -5.0996 -0.8813 34 1 1.7326 -5.0978 0.8986 35 1 2.4613 -7.5430 -0.7210 36 1 2.5251 -7.4053 1.0523 37 1 3.9892 -9.2377 0.2725 38 1 4.9583 -7.9294 0.9926 39 1 4.4791 -8.4156 -1.9837 40 1 6.0131 -8.6330 -1.1048 41 1 6.1753 -3.7669 -3.5947 42 1 4.7298 -4.6455 -1.3563 43 1 3.6415 -5.8132 -2.1496 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280643946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:07 Heat of formation + Delta-G solvation = 20.947128 kcal Electronic energy + Delta-G solvation = -26348.130206 eV Core-core repulsion = 22588.578478 eV Total energy + Delta-G solvation = -3759.551728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.17094 -39.43473 -37.78988 -36.88118 -34.76751 -33.73243 -33.07731 -32.31801 -30.90984 -29.87176 -27.96893 -25.77263 -25.31220 -23.50015 -22.27930 -22.02651 -21.01057 -20.56748 -19.50490 -18.79834 -16.94817 -16.85644 -16.53775 -15.83303 -15.39737 -15.25488 -14.71038 -14.31248 -14.09439 -13.84700 -13.77595 -13.65696 -13.56737 -13.29046 -13.26157 -13.01875 -12.92803 -12.87108 -12.35924 -12.23242 -12.21041 -12.09042 -11.28262 -11.06309 -10.78662 -10.53500 -10.30871 -10.25348 -10.22825 -10.01515 -9.91937 -9.62301 -9.48562 -8.93697 -8.70430 -8.54693 -6.72512 -5.85828 -3.28501 0.67642 1.39992 1.65282 2.65192 2.98961 3.28310 3.30423 3.38444 3.40889 3.41928 3.75759 4.39749 4.42785 4.50824 4.91879 5.09811 5.11967 5.25841 5.27906 5.34827 5.40606 5.50707 5.52994 5.55347 5.75202 5.78847 5.88241 5.94332 6.05844 6.23819 6.25732 6.36075 6.45523 6.51574 6.61113 6.65396 6.77184 6.81240 6.97064 7.04476 7.24754 7.54069 7.69141 7.73509 8.32351 8.37619 9.14627 9.77620 10.35051 11.22061 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.004527 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.262417 B = 6183.057244 C = 8483.952550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.110 3.890 3 O -0.150 6.150 4 C 0.027 3.973 5 C 0.293 3.707 6 N -0.379 5.379 7 C -0.081 4.081 8 C -0.235 4.235 9 C 0.588 3.412 10 O -0.547 6.547 11 N -0.709 5.709 12 C 0.132 3.868 13 C -0.129 4.129 14 H 0.070 0.930 15 C -0.100 4.100 16 C -0.133 4.133 17 C 0.143 3.857 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.897 3.103 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.179 3.821 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.173 0.827 32 H 0.406 0.594 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.052 0.948 41 H 0.253 0.747 42 H 0.087 0.913 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 5.216 7.931 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 O -0.044 6.044 4 C -0.024 4.024 5 C -0.022 4.022 6 N -0.057 5.057 7 C -0.104 4.104 8 C -0.239 4.239 9 C 0.375 3.625 10 O -0.427 6.427 11 N -0.359 5.359 12 C 0.008 3.992 13 C -0.149 4.149 14 H 0.088 0.912 15 C -0.138 4.138 16 C -0.172 4.172 17 C 0.017 3.983 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.052 3.948 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.136 0.864 31 H 0.190 0.810 32 H 0.241 0.759 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.318 6.524 7.803 14.488 hybrid contribution 1.227 0.242 -0.113 1.256 sum -9.091 6.766 7.689 13.695 Atomic orbital electron populations 1.20761 0.82674 1.05753 1.04922 1.23156 0.94279 0.82286 0.94913 1.83936 1.14956 1.34704 1.70784 1.16087 0.79592 0.89773 1.16982 1.23446 0.92033 0.92729 0.93990 1.81349 1.09512 1.05808 1.09039 1.22102 0.98431 0.92197 0.97685 1.20173 0.92735 0.95002 1.16038 1.17043 0.85672 0.83345 0.76415 1.90732 1.16161 1.84270 1.51538 1.45851 1.10084 1.06362 1.73609 1.21431 0.97191 0.78949 1.01596 1.22083 0.95692 0.94030 1.03140 0.91199 1.21327 0.97464 0.94540 1.00461 1.21987 0.97196 0.97598 1.00447 1.20935 0.96923 0.87278 0.93209 1.44024 1.04525 0.99868 1.83063 1.19235 0.83394 1.08717 1.26762 0.91673 1.25020 0.97233 1.00807 0.96438 1.70048 1.32666 1.23010 1.28788 0.86313 0.84218 0.79328 0.77499 1.20244 1.21683 1.21540 1.20713 0.88421 0.95720 0.89903 0.88681 0.89971 0.86450 0.80960 0.75861 0.91431 0.92035 0.92424 0.93362 0.93053 0.92430 0.96478 0.92918 0.93678 0.89534 0.96300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 9.87 36.00 0.36 -0.33 16 2 C 0.11 1.18 7.37 -34.85 -0.26 0.92 16 3 O -0.15 -1.64 10.62 5.98 0.06 -1.58 16 4 C 0.03 0.31 7.04 -38.42 -0.27 0.04 16 5 C 0.29 3.68 15.87 -22.47 -0.36 3.32 16 6 N -0.38 -5.42 18.54 41.84 0.78 -4.64 16 7 C -0.08 -0.94 10.28 -38.98 -0.40 -1.34 16 8 C -0.23 -2.90 6.13 -105.30 -0.65 -3.55 16 9 C 0.59 8.48 7.82 -12.49 -0.10 8.38 16 10 O -0.55 -8.82 14.77 5.27 0.08 -8.74 16 11 N -0.71 -10.27 5.32 -61.37 -0.33 -10.60 16 12 C 0.13 1.98 5.07 -4.04 -0.02 1.96 16 13 C -0.13 -2.14 2.36 -90.72 -0.21 -2.36 16 14 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 15 C -0.10 -1.52 5.17 -26.69 -0.14 -1.66 16 16 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 17 C 0.14 2.85 6.52 -3.71 -0.02 2.82 16 18 N -0.59 -13.94 3.00 -172.58 -0.52 -14.46 16 19 C -0.25 -6.55 9.58 -15.06 -0.14 -6.69 16 20 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 21 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -24.57 11.20 55.49 0.62 -23.95 16 23 Si 0.90 20.78 29.59 -169.99 -5.03 15.75 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.18 3.83 4.36 -3.93 -0.02 3.81 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.12 1.12 6.44 -51.93 -0.33 0.78 16 31 H 0.17 1.81 7.58 -52.49 -0.40 1.42 16 32 H 0.41 5.73 6.72 -40.82 -0.27 5.46 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.09 2.01 5.26 -51.93 -0.27 1.74 16 43 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -29.90 362.49 -7.24 -37.14 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.89 Total: 2.59 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.48 Total: 3.02 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.55 Total: -53.65 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.14 Total: -10.32 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.90 -7.24 -37.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280643946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.090 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds