Wall clock time and date at job start Tue Mar 31 2020 11:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.33584 * 125.73773 * 2 1 4 4 C 1.34882 * 109.83461 * 180.25889 * 3 2 1 5 5 C 1.43198 * 125.76129 * 179.80396 * 4 3 2 6 6 N 4.69758 * 150.57855 * 359.60015 * 2 1 3 7 7 C 1.36108 * 108.47449 * 359.76922 * 4 3 2 8 8 C 1.36737 * 125.73639 * 179.86059 * 2 1 3 9 9 C 1.47478 * 126.70180 * 0.02562 * 8 2 1 10 10 O 1.21603 * 120.00113 * 359.71057 * 9 8 2 11 11 N 1.34780 * 120.00435 * 179.71164 * 9 8 2 12 12 C 1.46495 * 120.00145 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47273 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.49452 * 54.93245 * 13 12 11 15 15 C 1.53033 * 109.50202 * 174.99893 * 13 12 11 16 16 C 1.53039 * 109.54135 * 181.31824 * 15 13 12 17 17 C 1.53193 * 109.31182 * 298.63679 * 16 15 13 18 18 N 1.46928 * 108.77558 * 54.63322 * 17 16 15 19 19 C 1.36939 * 120.62948 * 126.36714 * 18 17 16 20 20 H 1.07998 * 119.99697 * 331.91778 * 19 18 17 21 21 C 1.38812 * 119.99948 * 151.91586 * 19 18 17 22 22 N 1.31621 * 119.99722 * 343.21501 * 21 19 18 23 23 Si 1.86797 * 120.00136 * 163.21536 * 21 19 18 24 24 H 1.48497 * 109.47049 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47033 * 119.99925 * 23 21 19 26 26 H 1.48503 * 109.47061 * 240.00183 * 23 21 19 27 27 C 1.46924 * 118.73966 * 306.64301 * 18 17 16 28 28 H 1.09000 * 109.46975 * 270.13940 * 1 2 3 29 29 H 1.08998 * 109.47056 * 30.14135 * 1 2 3 30 30 H 1.09000 * 109.47085 * 150.13738 * 1 2 3 31 31 H 1.07999 * 126.71316 * 179.97438 * 7 4 3 32 32 H 0.96999 * 119.99764 * 359.97438 * 11 9 8 33 33 H 1.08999 * 109.47273 * 60.00148 * 12 11 9 34 34 H 1.08998 * 109.47288 * 300.00079 * 12 11 9 35 35 H 1.09005 * 109.45711 * 61.29310 * 15 13 12 36 36 H 1.08998 * 109.45089 * 301.33651 * 15 13 12 37 37 H 1.08999 * 109.49578 * 178.68575 * 16 15 13 38 38 H 1.08995 * 109.52302 * 58.60070 * 16 15 13 39 39 H 1.08996 * 109.58580 * 294.84971 * 17 16 15 40 40 H 1.09000 * 109.70506 * 174.49058 * 17 16 15 41 41 H 0.97006 * 119.99968 * 180.02562 * 22 21 19 42 42 H 1.08996 * 109.58947 * 173.14529 * 27 18 17 43 43 H 1.09007 * 109.58852 * 293.56956 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2872 1.0843 0.0000 4 6 3.5844 0.7147 -0.0057 5 6 4.7076 1.6029 -0.0115 6 7 5.5987 2.3075 -0.0161 7 6 3.6454 -0.6450 -0.0043 8 6 2.3056 -1.1099 0.0027 9 6 1.8606 -2.5159 0.0056 10 8 0.6731 -2.7779 0.0111 11 7 2.7700 -3.5107 0.0022 12 6 2.3279 -4.9073 0.0057 13 6 3.5492 -5.8289 0.0001 14 1 4.1996 -5.5761 0.8375 15 6 3.0921 -7.2837 0.1294 16 6 4.3146 -8.2039 0.1570 17 6 5.0900 -8.0556 -1.1559 18 7 5.4080 -6.6357 -1.3596 19 6 6.6976 -6.2351 -1.5866 20 1 7.5200 -6.8125 -1.1908 21 6 6.9479 -5.0868 -2.3253 22 7 6.0004 -4.5691 -3.0781 23 14 8.6293 -4.2764 -2.2512 24 1 9.5108 -5.0480 -1.3386 25 1 9.2259 -4.2492 -3.6108 26 1 8.4875 -2.8876 -1.7448 27 6 4.3168 -5.6531 -1.3090 28 1 -0.3633 0.0025 1.0277 29 1 -0.3633 0.8887 -0.5160 30 1 -0.3633 -0.8912 -0.5117 31 1 4.5393 -1.2511 -0.0082 32 1 3.7172 -3.3018 -0.0025 33 1 1.7242 -5.0996 -0.8813 34 1 1.7326 -5.0978 0.8986 35 1 2.4613 -7.5430 -0.7210 36 1 2.5251 -7.4053 1.0523 37 1 3.9892 -9.2377 0.2725 38 1 4.9583 -7.9294 0.9926 39 1 4.4791 -8.4156 -1.9837 40 1 6.0131 -8.6330 -1.1048 41 1 6.1753 -3.7669 -3.5947 42 1 4.7298 -4.6455 -1.3563 43 1 3.6415 -5.8132 -2.1496 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280643946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:06 Heat of formation + Delta-G solvation = 3.707228 kcal Electronic energy + Delta-G solvation = -26348.877784 eV Core-core repulsion = 22588.578478 eV Total energy + Delta-G solvation = -3760.299306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.08367 -40.62194 -39.25862 -37.92856 -36.13290 -34.90164 -34.53451 -33.17686 -32.43642 -31.49830 -28.86234 -27.29634 -26.89194 -24.58763 -23.80829 -23.09596 -22.25858 -21.68859 -20.84859 -20.03847 -18.67934 -17.84091 -17.66727 -16.98043 -16.77145 -16.41671 -16.16198 -15.73788 -15.35433 -15.22673 -14.98484 -14.77183 -14.75572 -14.53506 -14.41348 -14.14126 -13.98772 -13.83945 -13.73048 -13.67059 -13.50272 -12.89705 -12.88595 -12.85497 -12.54188 -12.18712 -11.96340 -11.74340 -11.51179 -11.30962 -11.26600 -11.06067 -10.95758 -10.53021 -10.05374 -9.68055 -8.62464 -7.84468 -5.29555 -0.23653 0.41651 0.70292 1.44631 1.49960 1.57847 1.67190 1.98582 2.18641 2.31638 2.51860 2.83432 3.28325 3.50881 3.55283 3.66809 3.96326 4.05183 4.14685 4.18868 4.29477 4.40725 4.48029 4.58022 4.64084 4.69819 4.71941 4.87313 4.90824 4.93932 4.95684 5.08542 5.19752 5.20927 5.28477 5.41101 5.44774 5.53576 5.59658 5.63301 5.70947 5.83808 6.05088 6.42393 6.54028 7.18556 7.19061 7.90147 8.41837 9.20613 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.004527 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.262417 B = 6183.057244 C = 8483.952550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.130 3.870 3 O -0.146 6.146 4 C 0.022 3.978 5 C 0.313 3.687 6 N -0.412 5.412 7 C -0.075 4.075 8 C -0.259 4.259 9 C 0.589 3.411 10 O -0.566 6.566 11 N -0.712 5.712 12 C 0.140 3.860 13 C -0.113 4.113 14 H 0.070 0.930 15 C -0.098 4.098 16 C -0.122 4.122 17 C 0.135 3.865 18 N -0.612 5.612 19 C -0.260 4.260 20 H 0.062 0.938 21 C -0.040 4.040 22 N -0.927 5.927 23 Si 0.954 3.046 24 H -0.270 1.270 25 H -0.298 1.298 26 H -0.287 1.287 27 C 0.188 3.812 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.178 0.822 32 H 0.406 0.594 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.010 0.990 40 H 0.049 0.951 41 H 0.249 0.751 42 H 0.064 0.936 43 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 5.140 9.522 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 O -0.039 6.039 4 C -0.029 4.029 5 C -0.002 4.002 6 N -0.091 5.091 7 C -0.098 4.098 8 C -0.263 4.263 9 C 0.377 3.623 10 O -0.447 6.447 11 N -0.362 5.362 12 C 0.016 3.984 13 C -0.133 4.133 14 H 0.089 0.911 15 C -0.136 4.136 16 C -0.161 4.161 17 C 0.010 3.990 18 N -0.335 5.335 19 C -0.391 4.391 20 H 0.080 0.920 21 C -0.236 4.236 22 N -0.573 5.573 23 Si 0.783 3.217 24 H -0.194 1.194 25 H -0.226 1.226 26 H -0.213 1.213 27 C 0.062 3.938 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.196 0.804 32 H 0.242 0.758 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges -11.342 6.430 9.414 16.081 hybrid contribution 1.491 0.186 -0.656 1.639 sum -9.851 6.616 8.758 14.749 Atomic orbital electron populations 1.20914 0.80556 1.06340 1.06278 1.23666 0.95260 0.81628 0.92140 1.83963 1.14651 1.34630 1.70671 1.15909 0.79656 0.89382 1.17988 1.23451 0.91716 0.92060 0.92989 1.81363 1.10441 1.06862 1.10400 1.22176 0.98519 0.92285 0.96806 1.20064 0.93400 0.94435 1.18414 1.17237 0.85316 0.83966 0.75734 1.90718 1.16788 1.84699 1.52542 1.45877 1.10228 1.06371 1.73732 1.21313 0.96250 0.78940 1.01865 1.21842 0.95718 0.95860 0.99916 0.91122 1.21353 0.97332 0.92857 1.02098 1.21867 0.96898 0.99700 0.97627 1.21117 0.97344 0.85335 0.95235 1.44326 1.04197 1.01718 1.83258 1.19494 0.84655 1.08741 1.26189 0.92008 1.25605 1.00011 1.01435 0.96504 1.70183 1.34187 1.23223 1.29723 0.85417 0.80943 0.78469 0.76884 1.19447 1.22559 1.21320 1.20525 0.87651 0.94212 0.91420 0.86753 0.87366 0.87752 0.80437 0.75794 0.92665 0.90128 0.92613 0.89985 0.89994 0.92509 0.97233 0.93274 0.94160 0.91770 0.99454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.87 71.23 0.70 -0.46 16 2 C 0.13 2.55 7.37 25.33 0.19 2.74 16 3 O -0.15 -2.94 10.62 -1.53 -0.02 -2.95 16 4 C 0.02 0.47 7.04 23.02 0.16 0.64 16 5 C 0.31 7.66 15.87 88.33 1.40 9.06 16 6 N -0.41 -11.68 18.54 19.00 0.35 -11.33 16 7 C -0.07 -1.68 10.28 22.66 0.23 -1.44 16 8 C -0.26 -6.14 6.13 -20.31 -0.12 -6.26 16 9 C 0.59 16.56 7.82 86.68 0.68 17.23 16 10 O -0.57 -17.71 14.77 -4.04 -0.06 -17.77 16 11 N -0.71 -20.32 5.32 -466.32 -2.48 -22.80 16 12 C 0.14 4.04 5.07 86.38 0.44 4.48 16 13 C -0.11 -3.64 2.36 -10.86 -0.03 -3.66 16 14 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 15 C -0.10 -2.76 5.17 30.62 0.16 -2.60 16 16 C -0.12 -3.65 6.08 30.67 0.19 -3.46 16 17 C 0.14 5.32 6.52 86.36 0.56 5.88 16 18 N -0.61 -29.04 3.00 -699.92 -2.10 -31.14 16 19 C -0.26 -13.70 9.58 84.03 0.81 -12.90 16 20 H 0.06 3.23 7.88 -2.91 -0.02 3.20 16 21 C -0.04 -2.10 4.92 84.86 0.42 -1.68 16 22 N -0.93 -51.78 11.20 21.65 0.24 -51.54 16 23 Si 0.95 43.15 29.59 68.60 2.03 45.18 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 27 C 0.19 8.18 4.36 86.22 0.38 8.55 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.81 6.44 -2.39 -0.02 1.80 16 31 H 0.18 3.70 7.58 -2.91 -0.02 3.68 16 32 H 0.41 11.50 6.72 -92.71 -0.62 10.88 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 41 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 42 H 0.06 3.07 5.26 -2.39 -0.01 3.06 16 43 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 Total: -1.00 -64.74 362.49 4.55 -60.20 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.42 Total: 16.02 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.16 Total: 16.12 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -3.99 Total: -116.80 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.08 Total: -20.72 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -64.74 4.55 -60.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280643946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.903 kcal (2) G-P(sol) polarization free energy of solvation -64.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds