Wall clock time and date at job start Tue Mar 31 2020 11:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33582 * 125.73721 * 2 1 4 4 C 1.34886 * 109.83090 * 179.97438 * 3 2 1 5 5 C 1.43197 * 125.75920 * 179.97438 * 4 3 2 6 6 N 4.69759 * 150.58126 * 0.02562 * 2 1 3 7 7 C 1.36103 * 108.47696 * 0.24044 * 4 3 2 8 8 C 1.36740 * 125.73234 * 179.97438 * 2 1 3 9 9 C 1.47474 * 126.70228 * 0.02562 * 8 2 1 10 10 O 1.21597 * 120.00159 * 0.02562 * 9 8 2 11 11 N 1.34783 * 119.99921 * 179.97438 * 9 8 2 12 12 C 1.46499 * 119.99826 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.08992 * 109.49907 * 305.00169 * 13 12 11 15 15 C 1.53042 * 109.49590 * 184.93655 * 13 12 11 16 16 C 1.53037 * 109.53516 * 178.68496 * 15 13 12 17 17 C 1.53199 * 109.31671 * 61.36652 * 16 15 13 18 18 N 1.46922 * 108.77104 * 305.36639 * 17 16 15 19 19 C 1.36943 * 120.63197 * 233.60587 * 18 17 16 20 20 H 1.07996 * 120.00273 * 152.62449 * 19 18 17 21 21 C 1.38816 * 119.99460 * 332.62980 * 19 18 17 22 22 N 1.31622 * 119.99510 * 159.34103 * 21 19 18 23 23 Si 1.86795 * 120.00288 * 339.34042 * 21 19 18 24 24 H 1.48499 * 109.47531 * 92.95332 * 23 21 19 25 25 H 1.48498 * 109.47291 * 212.95724 * 23 21 19 26 26 H 1.48509 * 109.46905 * 332.95325 * 23 21 19 27 27 C 1.46938 * 118.77022 * 53.58290 * 18 17 16 28 28 H 1.09004 * 109.47188 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47364 * 120.01965 * 1 2 3 30 30 H 1.09004 * 109.47121 * 240.02411 * 1 2 3 31 31 H 1.08002 * 126.71550 * 179.75470 * 7 4 3 32 32 H 0.96998 * 119.99909 * 0.02562 * 11 9 8 33 33 H 1.09006 * 109.47502 * 300.00261 * 12 11 9 34 34 H 1.09001 * 109.47315 * 60.00537 * 12 11 9 35 35 H 1.09008 * 109.45897 * 298.70275 * 15 13 12 36 36 H 1.08998 * 109.45908 * 58.67841 * 15 13 12 37 37 H 1.08998 * 109.49945 * 181.31518 * 16 15 13 38 38 H 1.08995 * 109.50087 * 301.41459 * 16 15 13 39 39 H 1.09001 * 109.58478 * 65.14563 * 17 16 15 40 40 H 1.08996 * 109.58937 * 185.43741 * 17 16 15 41 41 H 0.97001 * 119.99262 * 179.97438 * 22 21 19 42 42 H 1.08998 * 109.62056 * 186.63935 * 27 18 17 43 43 H 1.09006 * 109.55765 * 66.21327 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2872 1.0843 0.0000 4 6 3.5844 0.7146 0.0006 5 6 4.7076 1.6028 0.0002 6 7 5.5988 2.3074 0.0010 7 6 3.6454 -0.6450 -0.0045 8 6 2.3055 -1.1100 0.0005 9 6 1.8605 -2.5160 0.0006 10 8 0.6730 -2.7778 -0.0003 11 7 2.7699 -3.5107 0.0006 12 6 2.3278 -4.9074 0.0001 13 6 3.5491 -5.8290 0.0009 14 1 4.1951 -5.5776 -0.8402 15 6 3.0912 -7.2839 -0.1238 16 6 4.3136 -8.2042 -0.1561 17 6 5.0957 -8.0539 1.1525 18 7 5.4147 -6.6337 1.3523 19 6 6.7054 -6.2327 1.5725 20 1 7.0182 -5.2390 1.2879 21 6 7.6118 -7.1037 2.1616 22 7 8.9048 -6.9066 2.0142 23 14 6.9964 -8.5553 3.1632 24 1 6.8906 -9.7509 2.2888 25 1 7.9484 -8.8332 4.2685 26 1 5.6609 -8.2359 3.7288 27 6 4.3230 -5.6511 1.3109 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5141 -0.8898 30 1 -0.3633 -0.5135 0.8902 31 1 4.5393 -1.2512 -0.0091 32 1 3.7171 -3.3018 0.0009 33 1 1.7279 -5.0990 0.8899 34 1 1.7285 -5.0985 -0.8901 35 1 2.4649 -7.5419 0.7303 36 1 2.5196 -7.4072 -1.0437 37 1 3.9876 -9.2382 -0.2684 38 1 4.9528 -7.9306 -0.9954 39 1 4.4891 -8.4126 1.9841 40 1 6.0173 -8.6331 1.0960 41 1 9.5381 -7.5150 2.4261 42 1 4.7357 -4.6433 1.3576 43 1 3.6536 -5.8136 2.1557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280643948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:09 Heat of formation + Delta-G solvation = 27.161127 kcal Electronic energy + Delta-G solvation = -25918.419172 eV Core-core repulsion = 22159.136903 eV Total energy + Delta-G solvation = -3759.282269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.33952 -39.66565 -38.10007 -37.00689 -35.08014 -33.92221 -33.04462 -32.46505 -30.98750 -30.74159 -28.14972 -26.14455 -25.31892 -23.73074 -22.40470 -22.00688 -21.45297 -20.81295 -19.78065 -19.07252 -17.10087 -16.90678 -16.67185 -16.00385 -15.61610 -15.47136 -15.28423 -14.46648 -14.31776 -13.96426 -13.92272 -13.88860 -13.61341 -13.48046 -13.39686 -13.24700 -13.14692 -13.00499 -12.65322 -12.55314 -12.30351 -12.16824 -11.69943 -11.52295 -10.85215 -10.65658 -10.58820 -10.47643 -10.24242 -10.13419 -9.90676 -9.69878 -9.48106 -9.15739 -8.90392 -8.65384 -7.02699 -5.99747 -3.35897 0.52537 1.21676 1.50735 2.52330 2.85328 3.06182 3.16963 3.29020 3.45972 3.48507 3.59458 4.22417 4.30492 4.49191 4.71501 4.77386 4.94513 5.10018 5.15186 5.17344 5.18832 5.20091 5.25194 5.38423 5.57251 5.59066 5.71073 5.74263 5.77210 5.96910 6.05531 6.07090 6.24819 6.31768 6.35279 6.37911 6.51512 6.52035 6.64889 6.67000 6.92144 6.92228 7.43572 7.90448 8.09782 8.26953 8.88535 9.67218 10.04861 11.16077 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.003273 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.662133 B = 8553.966813 C =10165.537781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.112 3.888 3 O -0.149 6.149 4 C 0.031 3.969 5 C 0.290 3.710 6 N -0.374 5.374 7 C -0.085 4.085 8 C -0.239 4.239 9 C 0.588 3.412 10 O -0.542 6.542 11 N -0.715 5.715 12 C 0.129 3.871 13 C -0.121 4.121 14 H 0.079 0.921 15 C -0.100 4.100 16 C -0.134 4.134 17 C 0.123 3.877 18 N -0.605 5.605 19 C -0.263 4.263 20 H 0.085 0.915 21 C 0.025 3.975 22 N -0.907 5.907 23 Si 0.883 3.117 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.156 3.844 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.173 0.827 32 H 0.404 0.596 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.263 0.737 42 H 0.059 0.941 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.396 9.998 -5.953 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 O -0.042 6.042 4 C -0.020 4.020 5 C -0.025 4.025 6 N -0.052 5.052 7 C -0.108 4.108 8 C -0.243 4.243 9 C 0.375 3.625 10 O -0.421 6.421 11 N -0.366 5.366 12 C 0.005 3.995 13 C -0.141 4.141 14 H 0.097 0.903 15 C -0.138 4.138 16 C -0.173 4.173 17 C -0.002 4.002 18 N -0.329 5.329 19 C -0.391 4.391 20 H 0.102 0.898 21 C -0.175 4.175 22 N -0.550 5.550 23 Si 0.714 3.286 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.196 1.196 27 C 0.030 3.970 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.191 0.809 32 H 0.240 0.760 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -16.777 11.146 -5.891 20.985 hybrid contribution 0.184 -1.155 0.618 1.322 sum -16.592 9.991 -5.273 20.073 Atomic orbital electron populations 1.20630 0.82603 1.04107 1.05990 1.23166 0.94326 0.82312 0.94636 1.83961 1.15015 1.34640 1.70618 1.16106 0.79569 0.89797 1.16558 1.23448 0.92064 0.92852 0.94161 1.81378 1.09500 1.05582 1.08764 1.22072 0.98294 0.92208 0.98194 1.20153 0.92799 0.94880 1.16516 1.17060 0.85669 0.83333 0.76412 1.90776 1.16143 1.84336 1.50879 1.45873 1.10004 1.06385 1.74363 1.21475 0.97071 0.78803 1.02113 1.21965 0.95664 0.94716 1.01773 0.90303 1.21340 0.97634 0.93920 1.00948 1.21994 0.96955 0.97950 1.00450 1.21354 0.98202 0.86702 0.93941 1.44328 1.04084 1.01072 1.83391 1.18890 0.83677 1.01780 1.34740 0.89755 1.25266 0.95015 0.98308 0.98866 1.69838 1.00645 1.38975 1.45567 0.86947 0.78275 0.82796 0.80580 1.21623 1.23195 1.19578 1.20936 0.89665 0.93630 0.92818 0.90118 0.87799 0.87744 0.80912 0.76029 0.91275 0.91536 0.92290 0.92723 0.92676 0.91705 0.95779 0.91023 0.92735 0.92220 0.95796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 9.10 36.00 0.33 -0.15 16 2 C 0.11 0.96 7.37 -34.85 -0.26 0.70 16 3 O -0.15 -1.33 10.62 5.97 0.06 -1.27 16 4 C 0.03 0.28 7.04 -38.43 -0.27 0.01 16 5 C 0.29 3.04 15.88 -22.47 -0.36 2.68 16 6 N -0.37 -4.67 18.54 41.84 0.78 -3.90 16 7 C -0.08 -0.73 10.28 -38.98 -0.40 -1.13 16 8 C -0.24 -2.32 6.13 -105.30 -0.65 -2.97 16 9 C 0.59 6.85 7.82 -12.49 -0.10 6.75 16 10 O -0.54 -7.50 15.57 5.28 0.08 -7.42 16 11 N -0.72 -7.98 5.32 -61.36 -0.33 -8.31 16 12 C 0.13 1.55 5.07 -4.04 -0.02 1.53 16 13 C -0.12 -1.68 2.37 -90.50 -0.21 -1.90 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.10 -1.38 5.17 -26.69 -0.14 -1.52 16 16 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 17 C 0.12 2.56 4.20 -3.71 -0.02 2.55 16 18 N -0.61 -13.50 2.77 -172.31 -0.48 -13.98 16 19 C -0.26 -7.01 10.03 -15.05 -0.15 -7.16 16 20 H 0.08 2.37 8.05 -52.49 -0.42 1.95 16 21 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 22 N -0.91 -27.22 13.97 55.49 0.78 -26.45 16 23 Si 0.88 21.94 24.35 -169.99 -4.14 17.81 16 24 H -0.29 -6.91 6.62 56.52 0.37 -6.54 16 25 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.27 -6.61 6.64 56.52 0.38 -6.24 16 27 C 0.16 2.74 5.60 -3.71 -0.02 2.72 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.64 8.06 -51.93 -0.42 0.22 16 30 H 0.10 0.67 8.06 -51.93 -0.42 0.25 16 31 H 0.17 1.20 7.58 -52.49 -0.40 0.80 16 32 H 0.40 4.06 6.73 -40.82 -0.27 3.79 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16 40 H 0.07 1.65 4.50 -51.93 -0.23 1.42 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.06 1.01 7.14 -51.93 -0.37 0.64 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -32.13 357.65 -6.27 -38.40 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.90 Total: -0.62 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.51 Total: 0.35 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.75 Total: -52.63 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.15 Total: -8.69 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.13 -6.27 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280643948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.559 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds