Wall clock time and date at job start Tue Mar 31 2020 11:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33582 * 125.73721 * 2 1 4 4 C 1.34886 * 109.83090 * 179.97438 * 3 2 1 5 5 C 1.43197 * 125.75920 * 179.97438 * 4 3 2 6 6 N 4.69759 * 150.58126 * 0.02562 * 2 1 3 7 7 C 1.36103 * 108.47696 * 0.24044 * 4 3 2 8 8 C 1.36740 * 125.73234 * 179.97438 * 2 1 3 9 9 C 1.47474 * 126.70228 * 0.02562 * 8 2 1 10 10 O 1.21597 * 120.00159 * 0.02562 * 9 8 2 11 11 N 1.34783 * 119.99921 * 179.97438 * 9 8 2 12 12 C 1.46499 * 119.99826 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.08992 * 109.49907 * 305.00169 * 13 12 11 15 15 C 1.53042 * 109.49590 * 184.93655 * 13 12 11 16 16 C 1.53037 * 109.53516 * 178.68496 * 15 13 12 17 17 C 1.53199 * 109.31671 * 61.36652 * 16 15 13 18 18 N 1.46922 * 108.77104 * 305.36639 * 17 16 15 19 19 C 1.36943 * 120.63197 * 233.60587 * 18 17 16 20 20 H 1.07996 * 120.00273 * 152.62449 * 19 18 17 21 21 C 1.38816 * 119.99460 * 332.62980 * 19 18 17 22 22 N 1.31622 * 119.99510 * 159.34103 * 21 19 18 23 23 Si 1.86795 * 120.00288 * 339.34042 * 21 19 18 24 24 H 1.48499 * 109.47531 * 92.95332 * 23 21 19 25 25 H 1.48498 * 109.47291 * 212.95724 * 23 21 19 26 26 H 1.48509 * 109.46905 * 332.95325 * 23 21 19 27 27 C 1.46938 * 118.77022 * 53.58290 * 18 17 16 28 28 H 1.09004 * 109.47188 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47364 * 120.01965 * 1 2 3 30 30 H 1.09004 * 109.47121 * 240.02411 * 1 2 3 31 31 H 1.08002 * 126.71550 * 179.75470 * 7 4 3 32 32 H 0.96998 * 119.99909 * 0.02562 * 11 9 8 33 33 H 1.09006 * 109.47502 * 300.00261 * 12 11 9 34 34 H 1.09001 * 109.47315 * 60.00537 * 12 11 9 35 35 H 1.09008 * 109.45897 * 298.70275 * 15 13 12 36 36 H 1.08998 * 109.45908 * 58.67841 * 15 13 12 37 37 H 1.08998 * 109.49945 * 181.31518 * 16 15 13 38 38 H 1.08995 * 109.50087 * 301.41459 * 16 15 13 39 39 H 1.09001 * 109.58478 * 65.14563 * 17 16 15 40 40 H 1.08996 * 109.58937 * 185.43741 * 17 16 15 41 41 H 0.97001 * 119.99262 * 179.97438 * 22 21 19 42 42 H 1.08998 * 109.62056 * 186.63935 * 27 18 17 43 43 H 1.09006 * 109.55765 * 66.21327 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2872 1.0843 0.0000 4 6 3.5844 0.7146 0.0006 5 6 4.7076 1.6028 0.0002 6 7 5.5988 2.3074 0.0010 7 6 3.6454 -0.6450 -0.0045 8 6 2.3055 -1.1100 0.0005 9 6 1.8605 -2.5160 0.0006 10 8 0.6730 -2.7778 -0.0003 11 7 2.7699 -3.5107 0.0006 12 6 2.3278 -4.9074 0.0001 13 6 3.5491 -5.8290 0.0009 14 1 4.1951 -5.5776 -0.8402 15 6 3.0912 -7.2839 -0.1238 16 6 4.3136 -8.2042 -0.1561 17 6 5.0957 -8.0539 1.1525 18 7 5.4147 -6.6337 1.3523 19 6 6.7054 -6.2327 1.5725 20 1 7.0182 -5.2390 1.2879 21 6 7.6118 -7.1037 2.1616 22 7 8.9048 -6.9066 2.0142 23 14 6.9964 -8.5553 3.1632 24 1 6.8906 -9.7509 2.2888 25 1 7.9484 -8.8332 4.2685 26 1 5.6609 -8.2359 3.7288 27 6 4.3230 -5.6511 1.3109 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5141 -0.8898 30 1 -0.3633 -0.5135 0.8902 31 1 4.5393 -1.2512 -0.0091 32 1 3.7171 -3.3018 0.0009 33 1 1.7279 -5.0990 0.8899 34 1 1.7285 -5.0985 -0.8901 35 1 2.4649 -7.5419 0.7303 36 1 2.5196 -7.4072 -1.0437 37 1 3.9876 -9.2382 -0.2684 38 1 4.9528 -7.9306 -0.9954 39 1 4.4891 -8.4126 1.9841 40 1 6.0173 -8.6331 1.0960 41 1 9.5381 -7.5150 2.4261 42 1 4.7357 -4.6433 1.3576 43 1 3.6536 -5.8136 2.1557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280643948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:09 Heat of formation + Delta-G solvation = 6.263840 kcal Electronic energy + Delta-G solvation = -25919.325346 eV Core-core repulsion = 22159.136903 eV Total energy + Delta-G solvation = -3760.188443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.05738 -40.64133 -39.44045 -37.89305 -36.30294 -34.86105 -34.44508 -33.15811 -32.76200 -32.03655 -28.87484 -27.41564 -26.91246 -24.62720 -23.63251 -23.27528 -22.52185 -21.67430 -20.99310 -20.07343 -18.69875 -17.81819 -17.66426 -17.23065 -16.83902 -16.50572 -16.37141 -15.69596 -15.43919 -15.28190 -15.06346 -14.82410 -14.74719 -14.73396 -14.43696 -14.17076 -14.08097 -13.93638 -13.73881 -13.70885 -13.53996 -13.24710 -13.14535 -12.85950 -12.52725 -12.14294 -12.07109 -11.65444 -11.55759 -11.34058 -11.23467 -11.22664 -11.00674 -10.63573 -10.05685 -9.65749 -8.89286 -8.14860 -5.45242 -0.20039 0.44664 0.74023 1.30600 1.42339 1.50544 1.72587 2.02749 2.19258 2.32779 2.43285 2.85919 3.08039 3.35334 3.55674 3.57541 3.91051 3.97715 4.02495 4.07113 4.28627 4.32724 4.43879 4.51958 4.59318 4.63837 4.70129 4.71513 4.85549 4.87047 4.91545 4.95165 5.03621 5.13243 5.19218 5.22620 5.31476 5.34808 5.48899 5.62902 5.66394 5.89274 6.10073 6.15051 6.55505 6.95006 7.20951 7.65874 8.06602 9.04909 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.003273 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.662133 B = 8553.966813 C =10165.537781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.127 3.873 3 O -0.149 6.149 4 C 0.020 3.980 5 C 0.312 3.688 6 N -0.415 5.415 7 C -0.072 4.072 8 C -0.258 4.258 9 C 0.591 3.409 10 O -0.565 6.565 11 N -0.715 5.715 12 C 0.139 3.861 13 C -0.106 4.106 14 H 0.073 0.927 15 C -0.098 4.098 16 C -0.127 4.127 17 C 0.114 3.886 18 N -0.620 5.620 19 C -0.244 4.244 20 H 0.058 0.942 21 C -0.035 4.035 22 N -0.958 5.958 23 Si 0.943 3.057 24 H -0.276 1.276 25 H -0.315 1.315 26 H -0.262 1.262 27 C 0.151 3.849 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.187 0.813 32 H 0.409 0.591 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.044 0.956 41 H 0.260 0.740 42 H 0.059 0.941 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.419 9.525 -6.567 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.070 3.930 3 O -0.042 6.042 4 C -0.031 4.031 5 C -0.003 4.003 6 N -0.093 5.093 7 C -0.094 4.094 8 C -0.262 4.262 9 C 0.379 3.621 10 O -0.446 6.446 11 N -0.366 5.366 12 C 0.015 3.985 13 C -0.126 4.126 14 H 0.092 0.908 15 C -0.136 4.136 16 C -0.166 4.166 17 C -0.010 4.010 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.076 0.924 21 C -0.230 4.230 22 N -0.604 5.604 23 Si 0.773 3.227 24 H -0.203 1.203 25 H -0.245 1.245 26 H -0.187 1.187 27 C 0.026 3.974 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.205 0.795 32 H 0.245 0.755 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -19.845 10.675 -6.521 23.458 hybrid contribution 1.030 -0.951 0.769 1.599 sum -18.815 9.723 -5.752 21.946 Atomic orbital electron populations 1.20774 0.80832 1.05768 1.06012 1.23640 0.95206 0.81832 0.92303 1.83980 1.14865 1.34773 1.70628 1.15969 0.79467 0.89617 1.18009 1.23505 0.91729 0.92096 0.92959 1.81395 1.10682 1.06807 1.10432 1.22233 0.98557 0.92043 0.96608 1.20064 0.93408 0.94339 1.18427 1.17197 0.85296 0.83871 0.75751 1.90763 1.16990 1.84747 1.52093 1.45858 1.10308 1.06197 1.74213 1.21323 0.95864 0.78659 1.02618 1.21751 0.95874 0.95882 0.99077 0.90814 1.21360 0.96687 0.92577 1.02953 1.21905 0.97297 1.00292 0.97138 1.21435 0.97697 0.85265 0.96632 1.44487 1.03582 1.02727 1.83625 1.18907 0.85614 1.00394 1.32419 0.92413 1.25859 0.95055 1.01474 1.00608 1.69965 1.01906 1.40835 1.47733 0.85969 0.77501 0.80490 0.78750 1.20322 1.24477 1.18699 1.21140 0.88691 0.92527 0.95066 0.87738 0.87497 0.87698 0.79533 0.75478 0.91426 0.90337 0.91427 0.89640 0.90159 0.92727 0.95247 0.93770 0.93138 0.92261 0.95347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.10 71.23 0.65 -0.13 16 2 C 0.13 1.91 7.37 25.33 0.19 2.10 16 3 O -0.15 -2.40 10.62 -1.56 -0.02 -2.42 16 4 C 0.02 0.35 7.04 23.02 0.16 0.51 16 5 C 0.31 6.37 15.88 88.33 1.40 7.78 16 6 N -0.41 -10.38 18.54 19.00 0.35 -10.03 16 7 C -0.07 -1.13 10.28 22.66 0.23 -0.90 16 8 C -0.26 -4.53 6.13 -20.31 -0.12 -4.66 16 9 C 0.59 12.53 7.82 86.68 0.68 13.20 16 10 O -0.56 -14.40 15.57 -4.02 -0.06 -14.46 16 11 N -0.71 -14.36 5.32 -466.31 -2.48 -16.84 16 12 C 0.14 2.91 5.07 86.38 0.44 3.35 16 13 C -0.11 -2.65 2.37 -10.72 -0.03 -2.68 16 14 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 15 C -0.10 -2.31 5.17 30.62 0.16 -2.16 16 16 C -0.13 -3.79 6.08 30.67 0.19 -3.61 16 17 C 0.11 4.55 4.20 86.37 0.36 4.92 16 18 N -0.62 -27.09 2.77 -699.06 -1.94 -29.03 16 19 C -0.24 -13.18 10.03 84.03 0.84 -12.33 16 20 H 0.06 3.36 8.05 -2.91 -0.02 3.34 16 21 C -0.04 -2.02 5.23 84.86 0.44 -1.58 16 22 N -0.96 -59.32 13.97 21.65 0.30 -59.02 16 23 Si 0.94 45.92 24.35 68.60 1.67 47.59 16 24 H -0.28 -12.74 6.62 99.48 0.66 -12.08 16 25 H -0.32 -15.81 7.11 99.48 0.71 -15.10 16 26 H -0.26 -12.22 6.64 99.48 0.66 -11.56 16 27 C 0.15 5.04 5.60 86.36 0.48 5.52 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.11 1.07 8.06 -2.39 -0.02 1.05 16 30 H 0.10 1.11 8.06 -2.38 -0.02 1.09 16 31 H 0.19 2.31 7.58 -2.91 -0.02 2.29 16 32 H 0.41 7.47 6.73 -92.71 -0.62 6.84 16 33 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.03 1.15 7.08 -2.39 -0.02 1.13 16 40 H 0.04 1.99 4.50 -2.39 -0.01 1.98 16 41 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.06 1.95 7.14 -2.39 -0.02 1.93 16 43 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -70.40 357.65 4.23 -66.17 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.33 Total: 8.69 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 6.08 Total: 9.35 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.76 Total: -114.91 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.08 Total: -16.88 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -70.40 4.23 -66.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280643948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.433 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds