Wall clock time and date at job start Tue Mar 31 2020 12:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46935 * 184.51131 * 3 2 1 5 5 C 1.36980 * 120.00094 * 271.33253 * 4 3 2 6 6 H 1.08003 * 120.00115 * 188.95123 * 5 4 3 7 7 C 1.38978 * 120.00051 * 8.93996 * 5 4 3 8 8 N 1.31415 * 119.99683 * 18.84953 * 7 5 4 9 9 Si 1.86792 * 120.00236 * 198.84174 * 7 5 4 10 10 H 1.48501 * 109.46832 * 90.00846 * 9 7 5 11 11 H 1.48506 * 109.47111 * 210.00056 * 9 7 5 12 12 H 1.48496 * 109.47423 * 330.00498 * 9 7 5 13 13 C 1.34783 * 120.00168 * 91.33225 * 4 3 2 14 14 O 1.21625 * 119.99597 * 185.02908 * 13 4 3 15 15 C 1.47349 * 119.99901 * 5.30481 * 13 4 3 16 16 C 1.41323 * 126.42315 * 312.47922 * 15 13 4 17 17 N 1.30444 * 108.03071 * 179.88219 * 16 15 13 18 18 N 1.39928 * 108.91156 * 0.37979 * 17 16 15 19 19 C 1.46502 * 125.75373 * 179.79067 * 18 17 16 20 20 C 1.53182 * 109.54071 * 59.77852 * 19 18 17 21 21 C 1.53107 * 109.15666 * 183.24266 * 20 19 18 22 22 O 1.42906 * 109.48547 * 57.47534 * 21 20 19 23 23 C 1.42900 * 114.09744 * 298.89177 * 22 21 20 24 24 C 1.53092 * 109.41608 * 61.15495 * 23 22 21 25 25 C 1.34288 * 108.50052 * 359.75432 * 18 17 16 26 26 C 1.50706 * 126.30208 * 179.97438 * 25 18 17 27 27 H 4.40639 * 5.51409 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.46981 * 64.50984 * 3 2 1 29 29 H 1.09005 * 109.47166 * 304.51109 * 3 2 1 30 30 H 0.97005 * 120.00183 * 179.97438 * 8 7 5 31 31 H 1.07999 * 125.98432 * 0.03445 * 16 15 13 32 32 H 1.09000 * 109.54595 * 179.97438 * 19 18 17 33 33 H 1.08994 * 109.52674 * 303.06380 * 20 19 18 34 34 H 1.09003 * 109.52316 * 63.25466 * 20 19 18 35 35 H 1.08998 * 109.40734 * 297.49461 * 21 20 19 36 36 H 1.08996 * 109.47981 * 177.50301 * 21 20 19 37 37 H 1.08997 * 109.47969 * 301.16970 * 23 22 21 38 38 H 1.09005 * 109.47762 * 181.14127 * 23 22 21 39 39 H 1.09000 * 109.51759 * 182.48169 * 24 23 22 40 40 H 1.08999 * 109.57418 * 62.33329 * 24 23 22 41 41 H 1.08997 * 109.46988 * 270.00744 * 26 25 18 42 42 H 1.08996 * 109.46721 * 29.99884 * 26 25 18 43 43 H 1.08995 * 109.46967 * 150.00217 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3778 0.1086 5 6 3.3356 2.1241 -1.0221 6 1 3.8289 3.0825 -0.9556 7 6 2.9059 1.6478 -2.2550 8 7 2.0019 0.6958 -2.3128 9 14 3.6133 2.3609 -3.8299 10 1 4.8153 1.5851 -4.2283 11 1 2.5954 2.2850 -4.9086 12 1 3.9915 3.7791 -3.6050 13 6 3.3837 1.9105 1.3212 14 8 3.7004 3.0808 1.4176 15 6 3.2792 1.0735 2.5294 16 6 2.2150 0.2036 2.8581 17 7 2.4921 -0.3591 4.0018 18 7 3.7240 0.1229 4.4578 19 6 4.3840 -0.2614 5.7080 20 6 4.6453 -1.7708 5.7065 21 6 5.2607 -2.1755 7.0487 22 8 4.3836 -1.7928 8.1100 23 6 4.1422 -0.3865 8.1890 24 6 3.4799 0.0896 6.8935 25 6 4.2000 0.9965 3.5558 26 6 5.4996 1.7542 3.6471 27 1 -1.0502 -0.0004 -0.0002 28 1 3.0095 -0.4414 -0.9276 29 1 3.0097 -0.5814 0.8468 30 1 1.7016 0.3635 -3.1733 31 1 1.3289 0.0326 2.2648 32 1 5.3297 0.2725 5.8003 33 1 3.7051 -2.3032 5.5630 34 1 5.3333 -2.0205 4.8987 35 1 6.2211 -1.6750 7.1724 36 1 5.4079 -3.2553 7.0703 37 1 5.0879 0.1374 8.3277 38 1 3.4837 -0.1776 9.0321 39 1 3.3350 1.1692 6.9340 40 1 2.5149 -0.4030 6.7742 41 1 5.3321 2.7027 4.1573 42 1 6.2256 1.1641 4.2063 43 1 5.8809 1.9436 2.6437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281997127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:47 Heat of formation + Delta-G solvation = 68.622886 kcal Electronic energy + Delta-G solvation = -26952.184256 eV Core-core repulsion = 23194.699904 eV Total energy + Delta-G solvation = -3757.484352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18645 -39.42197 -38.11721 -35.12467 -34.74595 -32.16175 -31.98683 -31.48691 -31.20384 -30.03955 -27.16339 -26.33265 -25.17178 -24.38603 -23.91687 -21.82343 -21.14531 -19.51917 -18.50141 -17.85043 -17.13379 -16.41535 -16.37982 -16.06555 -15.73766 -15.15069 -15.05745 -14.64671 -14.14234 -14.05027 -13.82965 -13.64473 -13.61102 -13.05095 -12.78242 -12.59066 -12.49575 -12.30037 -11.98981 -11.78009 -11.64498 -11.57616 -11.50500 -11.18829 -10.97846 -10.80462 -10.46475 -10.31468 -10.29696 -10.01530 -9.33799 -9.28405 -8.98891 -8.75148 -8.47928 -7.92649 -7.89114 -6.29259 -3.79404 2.04659 2.56135 2.88741 3.20418 3.26422 3.31289 3.53222 3.85974 4.01759 4.12267 4.23075 4.26098 4.38209 4.59755 4.60819 4.80823 4.85139 4.94829 5.03374 5.10843 5.16546 5.24419 5.27248 5.32913 5.46894 5.49202 5.61919 5.65476 5.72353 5.84070 5.88713 6.04204 6.11047 6.14043 6.35365 6.50479 6.82459 6.92739 6.96406 7.14040 7.25653 7.57540 8.01688 8.07920 8.47744 8.88132 9.16588 9.40622 9.98486 10.68543 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024226 B = 0.003392 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.520264 B = 8253.347622 C = 8739.391424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.099 4.099 3 C 0.230 3.770 4 N -0.433 5.433 5 C -0.307 4.307 6 H 0.107 0.893 7 C 0.028 3.972 8 N -0.866 5.866 9 Si 0.926 3.074 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.519 3.481 14 O -0.587 6.587 15 C -0.248 4.248 16 C 0.074 3.926 17 N -0.303 5.303 18 N -0.366 5.366 19 C 0.165 3.835 20 C -0.165 4.165 21 C 0.065 3.935 22 O -0.381 6.381 23 C 0.066 3.934 24 C -0.164 4.164 25 C 0.116 3.884 26 C -0.085 4.085 27 H 0.199 0.801 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.268 0.732 31 H 0.189 0.811 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 -6.409 15.747 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.101 4.101 3 C 0.106 3.894 4 N -0.150 5.150 5 C -0.434 4.434 6 H 0.125 0.875 7 C -0.175 4.175 8 N -0.505 5.505 9 Si 0.753 3.247 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.308 3.692 14 O -0.472 6.472 15 C -0.263 4.263 16 C -0.112 4.112 17 N -0.123 5.123 18 N -0.148 5.148 19 C 0.062 3.938 20 C -0.203 4.203 21 C -0.012 4.012 22 O -0.299 6.299 23 C -0.012 4.012 24 C -0.203 4.203 25 C -0.013 4.013 26 C -0.144 4.144 27 H 0.216 0.784 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.205 0.795 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.858 -6.915 16.725 19.022 hybrid contribution 0.066 1.011 -1.934 2.184 sum 5.924 -5.903 14.791 16.991 Atomic orbital electron populations 1.24266 0.95359 1.02386 1.06997 1.23129 0.94278 0.98074 0.94644 1.18483 0.84235 0.84678 1.01973 1.43600 1.55604 1.10961 1.04831 1.19762 1.36187 1.04347 0.83117 0.87490 1.25279 0.95426 0.97341 0.99488 1.70070 1.25825 1.28772 1.25847 0.85928 0.78529 0.79518 0.80772 1.20375 1.21116 1.19432 1.16965 0.84382 0.86256 0.81618 1.90592 1.54206 1.16443 1.85918 1.20352 0.97951 1.08059 0.99936 1.24352 0.99396 0.94058 0.93413 1.77018 0.97477 1.23421 1.14339 1.48327 1.16223 1.33424 1.16802 1.21224 0.95228 0.96363 0.80951 1.22582 1.03938 0.94899 0.98873 1.22581 0.92050 1.01196 0.85369 1.87963 1.67481 1.23220 1.51244 1.22579 0.99740 0.81750 0.97108 1.22573 1.00953 1.02835 0.93909 1.21308 0.97060 0.93311 0.89666 1.20419 0.90472 0.98663 1.04799 0.78431 0.86710 0.92007 0.92096 0.79475 0.88253 0.89209 0.90128 0.92877 0.88146 0.92847 0.88173 0.90197 0.89241 0.89961 0.91948 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.72 19.00 29.55 0.56 -5.16 16 2 C -0.10 -2.27 9.15 -37.12 -0.34 -2.61 16 3 C 0.23 5.27 4.77 -6.83 -0.03 5.23 16 4 N -0.43 -11.10 2.58 -119.18 -0.31 -11.41 16 5 C -0.31 -8.41 9.45 -14.98 -0.14 -8.55 16 6 H 0.11 3.07 7.29 -52.48 -0.38 2.69 16 7 C 0.03 0.72 5.06 -17.46 -0.09 0.63 16 8 N -0.87 -22.46 8.76 55.50 0.49 -21.97 16 9 Si 0.93 20.41 29.59 -169.99 -5.03 15.38 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.52 13.01 7.15 -12.55 -0.09 12.92 16 14 O -0.59 -16.33 16.52 5.26 0.09 -16.25 16 15 C -0.25 -5.19 5.04 -105.07 -0.53 -5.72 16 16 C 0.07 1.45 9.79 -16.97 -0.17 1.29 16 17 N -0.30 -5.38 12.33 30.87 0.38 -5.00 16 18 N -0.37 -5.64 3.26 -49.96 -0.16 -5.81 16 19 C 0.16 1.83 2.98 -67.75 -0.20 1.63 16 20 C -0.16 -1.65 5.68 -26.58 -0.15 -1.80 16 21 C 0.07 0.52 6.84 37.21 0.25 0.78 16 22 O -0.38 -3.76 10.77 -35.23 -0.38 -4.14 16 23 C 0.07 0.53 6.84 37.21 0.25 0.78 16 24 C -0.16 -1.67 5.68 -26.60 -0.15 -1.83 16 25 C 0.12 2.01 7.01 -81.56 -0.57 1.44 16 26 C -0.09 -1.20 9.59 36.01 0.35 -0.85 16 27 H 0.20 3.42 7.80 -54.08 -0.42 3.00 16 28 H 0.12 2.77 6.22 -51.93 -0.32 2.44 16 29 H 0.06 1.29 5.73 -51.93 -0.30 0.99 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.19 3.68 5.37 -52.49 -0.28 3.40 16 32 H 0.10 0.90 6.63 -51.93 -0.34 0.56 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16 43 H 0.09 1.47 7.96 -51.93 -0.41 1.05 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -32.49 354.83 -6.40 -38.89 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.77 Total: 6.78 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -1.05 Total: -1.82 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.40 Total: -44.18 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.29 Total: -20.38 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.49 -6.40 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281997127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.510 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds