Wall clock time and date at job start Tue Mar 31 2020 12:09:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17403 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46493 * 109.46935 * 184.51131 * 3 2 1
5 5 C 1.36980 * 120.00094 * 271.33253 * 4 3 2
6 6 H 1.08003 * 120.00115 * 188.95123 * 5 4 3
7 7 C 1.38978 * 120.00051 * 8.93996 * 5 4 3
8 8 N 1.31415 * 119.99683 * 18.84953 * 7 5 4
9 9 Si 1.86792 * 120.00236 * 198.84174 * 7 5 4
10 10 H 1.48501 * 109.46832 * 90.00846 * 9 7 5
11 11 H 1.48506 * 109.47111 * 210.00056 * 9 7 5
12 12 H 1.48496 * 109.47423 * 330.00498 * 9 7 5
13 13 C 1.34783 * 120.00168 * 91.33225 * 4 3 2
14 14 O 1.21625 * 119.99597 * 185.02908 * 13 4 3
15 15 C 1.47349 * 119.99901 * 5.30481 * 13 4 3
16 16 C 1.41323 * 126.42315 * 312.47922 * 15 13 4
17 17 N 1.30444 * 108.03071 * 179.88219 * 16 15 13
18 18 N 1.39928 * 108.91156 * 0.37979 * 17 16 15
19 19 C 1.46502 * 125.75373 * 179.79067 * 18 17 16
20 20 C 1.53182 * 109.54071 * 59.77852 * 19 18 17
21 21 C 1.53107 * 109.15666 * 183.24266 * 20 19 18
22 22 O 1.42906 * 109.48547 * 57.47534 * 21 20 19
23 23 C 1.42900 * 114.09744 * 298.89177 * 22 21 20
24 24 C 1.53092 * 109.41608 * 61.15495 * 23 22 21
25 25 C 1.34288 * 108.50052 * 359.75432 * 18 17 16
26 26 C 1.50706 * 126.30208 * 179.97438 * 25 18 17
27 27 H 4.40639 * 5.51409 * 179.97438 * 4 1 2
28 28 H 1.09001 * 109.46981 * 64.50984 * 3 2 1
29 29 H 1.09005 * 109.47166 * 304.51109 * 3 2 1
30 30 H 0.97005 * 120.00183 * 179.97438 * 8 7 5
31 31 H 1.07999 * 125.98432 * 0.03445 * 16 15 13
32 32 H 1.09000 * 109.54595 * 179.97438 * 19 18 17
33 33 H 1.08994 * 109.52674 * 303.06380 * 20 19 18
34 34 H 1.09003 * 109.52316 * 63.25466 * 20 19 18
35 35 H 1.08998 * 109.40734 * 297.49461 * 21 20 19
36 36 H 1.08996 * 109.47981 * 177.50301 * 21 20 19
37 37 H 1.08997 * 109.47969 * 301.16970 * 23 22 21
38 38 H 1.09005 * 109.47762 * 181.14127 * 23 22 21
39 39 H 1.09000 * 109.51759 * 182.48169 * 24 23 22
40 40 H 1.08999 * 109.57418 * 62.33329 * 24 23 22
41 41 H 1.08997 * 109.46988 * 270.00744 * 26 25 18
42 42 H 1.08996 * 109.46721 * 29.99884 * 26 25 18
43 43 H 1.08995 * 109.46967 * 150.00217 * 26 25 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3778 0.1086
5 6 3.3356 2.1241 -1.0221
6 1 3.8289 3.0825 -0.9556
7 6 2.9059 1.6478 -2.2550
8 7 2.0019 0.6958 -2.3128
9 14 3.6133 2.3609 -3.8299
10 1 4.8153 1.5851 -4.2283
11 1 2.5954 2.2850 -4.9086
12 1 3.9915 3.7791 -3.6050
13 6 3.3837 1.9105 1.3212
14 8 3.7004 3.0808 1.4176
15 6 3.2792 1.0735 2.5294
16 6 2.2150 0.2036 2.8581
17 7 2.4921 -0.3591 4.0018
18 7 3.7240 0.1229 4.4578
19 6 4.3840 -0.2614 5.7080
20 6 4.6453 -1.7708 5.7065
21 6 5.2607 -2.1755 7.0487
22 8 4.3836 -1.7928 8.1100
23 6 4.1422 -0.3865 8.1890
24 6 3.4799 0.0896 6.8935
25 6 4.2000 0.9965 3.5558
26 6 5.4996 1.7542 3.6471
27 1 -1.0502 -0.0004 -0.0002
28 1 3.0095 -0.4414 -0.9276
29 1 3.0097 -0.5814 0.8468
30 1 1.7016 0.3635 -3.1733
31 1 1.3289 0.0326 2.2648
32 1 5.3297 0.2725 5.8003
33 1 3.7051 -2.3032 5.5630
34 1 5.3333 -2.0205 4.8987
35 1 6.2211 -1.6750 7.1724
36 1 5.4079 -3.2553 7.0703
37 1 5.0879 0.1374 8.3277
38 1 3.4837 -0.1776 9.0321
39 1 3.3350 1.1692 6.9340
40 1 2.5149 -0.4030 6.7742
41 1 5.3321 2.7027 4.1573
42 1 6.2256 1.1641 4.2063
43 1 5.8809 1.9436 2.6437
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000281997127.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:47
Heat of formation + Delta-G solvation = 68.622886 kcal
Electronic energy + Delta-G solvation = -26952.184256 eV
Core-core repulsion = 23194.699904 eV
Total energy + Delta-G solvation = -3757.484352 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.18645 -39.42197 -38.11721 -35.12467 -34.74595 -32.16175 -31.98683 -31.48691
-31.20384 -30.03955 -27.16339 -26.33265 -25.17178 -24.38603 -23.91687 -21.82343
-21.14531 -19.51917 -18.50141 -17.85043 -17.13379 -16.41535 -16.37982 -16.06555
-15.73766 -15.15069 -15.05745 -14.64671 -14.14234 -14.05027 -13.82965 -13.64473
-13.61102 -13.05095 -12.78242 -12.59066 -12.49575 -12.30037 -11.98981 -11.78009
-11.64498 -11.57616 -11.50500 -11.18829 -10.97846 -10.80462 -10.46475 -10.31468
-10.29696 -10.01530 -9.33799 -9.28405 -8.98891 -8.75148 -8.47928 -7.92649
-7.89114 -6.29259 -3.79404 2.04659 2.56135 2.88741 3.20418 3.26422
3.31289 3.53222 3.85974 4.01759 4.12267 4.23075 4.26098 4.38209
4.59755 4.60819 4.80823 4.85139 4.94829 5.03374 5.10843 5.16546
5.24419 5.27248 5.32913 5.46894 5.49202 5.61919 5.65476 5.72353
5.84070 5.88713 6.04204 6.11047 6.14043 6.35365 6.50479 6.82459
6.92739 6.96406 7.14040 7.25653 7.57540 8.01688 8.07920 8.47744
8.88132 9.16588 9.40622 9.98486 10.68543
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.024226 B = 0.003392 C = 0.003203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1155.520264 B = 8253.347622 C = 8739.391424
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.271 4.271
2 C -0.099 4.099
3 C 0.230 3.770
4 N -0.433 5.433
5 C -0.307 4.307
6 H 0.107 0.893
7 C 0.028 3.972
8 N -0.866 5.866
9 Si 0.926 3.074
10 H -0.278 1.278
11 H -0.285 1.285
12 H -0.270 1.270
13 C 0.519 3.481
14 O -0.587 6.587
15 C -0.248 4.248
16 C 0.074 3.926
17 N -0.303 5.303
18 N -0.366 5.366
19 C 0.165 3.835
20 C -0.165 4.165
21 C 0.065 3.935
22 O -0.381 6.381
23 C 0.066 3.934
24 C -0.164 4.164
25 C 0.116 3.884
26 C -0.085 4.085
27 H 0.199 0.801
28 H 0.115 0.885
29 H 0.062 0.938
30 H 0.268 0.732
31 H 0.189 0.811
32 H 0.100 0.900
33 H 0.089 0.911
34 H 0.080 0.920
35 H 0.053 0.947
36 H 0.100 0.900
37 H 0.053 0.947
38 H 0.100 0.900
39 H 0.079 0.921
40 H 0.089 0.911
41 H 0.082 0.918
42 H 0.062 0.938
43 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.190 -6.409 15.747 18.093
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.290 4.290
2 C -0.101 4.101
3 C 0.106 3.894
4 N -0.150 5.150
5 C -0.434 4.434
6 H 0.125 0.875
7 C -0.175 4.175
8 N -0.505 5.505
9 Si 0.753 3.247
10 H -0.204 1.204
11 H -0.211 1.211
12 H -0.194 1.194
13 C 0.308 3.692
14 O -0.472 6.472
15 C -0.263 4.263
16 C -0.112 4.112
17 N -0.123 5.123
18 N -0.148 5.148
19 C 0.062 3.938
20 C -0.203 4.203
21 C -0.012 4.012
22 O -0.299 6.299
23 C -0.012 4.012
24 C -0.203 4.203
25 C -0.013 4.013
26 C -0.144 4.144
27 H 0.216 0.784
28 H 0.133 0.867
29 H 0.080 0.920
30 H 0.079 0.921
31 H 0.205 0.795
32 H 0.117 0.883
33 H 0.108 0.892
34 H 0.099 0.901
35 H 0.071 0.929
36 H 0.119 0.881
37 H 0.072 0.928
38 H 0.118 0.882
39 H 0.098 0.902
40 H 0.108 0.892
41 H 0.100 0.900
42 H 0.081 0.919
43 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 5.858 -6.915 16.725 19.022
hybrid contribution 0.066 1.011 -1.934 2.184
sum 5.924 -5.903 14.791 16.991
Atomic orbital electron populations
1.24266 0.95359 1.02386 1.06997 1.23129 0.94278 0.98074 0.94644
1.18483 0.84235 0.84678 1.01973 1.43600 1.55604 1.10961 1.04831
1.19762 1.36187 1.04347 0.83117 0.87490 1.25279 0.95426 0.97341
0.99488 1.70070 1.25825 1.28772 1.25847 0.85928 0.78529 0.79518
0.80772 1.20375 1.21116 1.19432 1.16965 0.84382 0.86256 0.81618
1.90592 1.54206 1.16443 1.85918 1.20352 0.97951 1.08059 0.99936
1.24352 0.99396 0.94058 0.93413 1.77018 0.97477 1.23421 1.14339
1.48327 1.16223 1.33424 1.16802 1.21224 0.95228 0.96363 0.80951
1.22582 1.03938 0.94899 0.98873 1.22581 0.92050 1.01196 0.85369
1.87963 1.67481 1.23220 1.51244 1.22579 0.99740 0.81750 0.97108
1.22573 1.00953 1.02835 0.93909 1.21308 0.97060 0.93311 0.89666
1.20419 0.90472 0.98663 1.04799 0.78431 0.86710 0.92007 0.92096
0.79475 0.88253 0.89209 0.90128 0.92877 0.88146 0.92847 0.88173
0.90197 0.89241 0.89961 0.91948 0.88949
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.27 -5.72 19.00 29.55 0.56 -5.16 16
2 C -0.10 -2.27 9.15 -37.12 -0.34 -2.61 16
3 C 0.23 5.27 4.77 -6.83 -0.03 5.23 16
4 N -0.43 -11.10 2.58 -119.18 -0.31 -11.41 16
5 C -0.31 -8.41 9.45 -14.98 -0.14 -8.55 16
6 H 0.11 3.07 7.29 -52.48 -0.38 2.69 16
7 C 0.03 0.72 5.06 -17.46 -0.09 0.63 16
8 N -0.87 -22.46 8.76 55.50 0.49 -21.97 16
9 Si 0.93 20.41 29.59 -169.99 -5.03 15.38 16
10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16
11 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16
12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16
13 C 0.52 13.01 7.15 -12.55 -0.09 12.92 16
14 O -0.59 -16.33 16.52 5.26 0.09 -16.25 16
15 C -0.25 -5.19 5.04 -105.07 -0.53 -5.72 16
16 C 0.07 1.45 9.79 -16.97 -0.17 1.29 16
17 N -0.30 -5.38 12.33 30.87 0.38 -5.00 16
18 N -0.37 -5.64 3.26 -49.96 -0.16 -5.81 16
19 C 0.16 1.83 2.98 -67.75 -0.20 1.63 16
20 C -0.16 -1.65 5.68 -26.58 -0.15 -1.80 16
21 C 0.07 0.52 6.84 37.21 0.25 0.78 16
22 O -0.38 -3.76 10.77 -35.23 -0.38 -4.14 16
23 C 0.07 0.53 6.84 37.21 0.25 0.78 16
24 C -0.16 -1.67 5.68 -26.60 -0.15 -1.83 16
25 C 0.12 2.01 7.01 -81.56 -0.57 1.44 16
26 C -0.09 -1.20 9.59 36.01 0.35 -0.85 16
27 H 0.20 3.42 7.80 -54.08 -0.42 3.00 16
28 H 0.12 2.77 6.22 -51.93 -0.32 2.44 16
29 H 0.06 1.29 5.73 -51.93 -0.30 0.99 16
30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16
31 H 0.19 3.68 5.37 -52.49 -0.28 3.40 16
32 H 0.10 0.90 6.63 -51.93 -0.34 0.56 16
33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
36 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16
37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16
38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16
41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
42 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16
43 H 0.09 1.47 7.96 -51.93 -0.41 1.05 16
LS Contribution 354.83 15.07 5.35 5.35
Total: -1.00 -32.49 354.83 -6.40 -38.89
By element:
Atomic # 1 Polarization: 12.55 SS G_CDS: -5.77 Total: 6.78 kcal
Atomic # 6 Polarization: -0.78 SS G_CDS: -1.05 Total: -1.82 kcal
Atomic # 7 Polarization: -44.58 SS G_CDS: 0.40 Total: -44.18 kcal
Atomic # 8 Polarization: -20.09 SS G_CDS: -0.29 Total: -20.38 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -32.49 -6.40 -38.89 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281997127.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.510 kcal
(2) G-P(sol) polarization free energy of solvation -32.488 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.623 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds