Wall clock time and date at job start Tue Mar 31 2020 12:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46935 * 184.51131 * 3 2 1 5 5 C 1.36980 * 120.00094 * 271.33253 * 4 3 2 6 6 H 1.08003 * 120.00115 * 188.95123 * 5 4 3 7 7 C 1.38978 * 120.00051 * 8.93996 * 5 4 3 8 8 N 1.31415 * 119.99683 * 18.84953 * 7 5 4 9 9 Si 1.86792 * 120.00236 * 198.84174 * 7 5 4 10 10 H 1.48501 * 109.46832 * 90.00846 * 9 7 5 11 11 H 1.48506 * 109.47111 * 210.00056 * 9 7 5 12 12 H 1.48496 * 109.47423 * 330.00498 * 9 7 5 13 13 C 1.34783 * 120.00168 * 91.33225 * 4 3 2 14 14 O 1.21625 * 119.99597 * 185.02908 * 13 4 3 15 15 C 1.47349 * 119.99901 * 5.30481 * 13 4 3 16 16 C 1.41323 * 126.42315 * 312.47922 * 15 13 4 17 17 N 1.30444 * 108.03071 * 179.88219 * 16 15 13 18 18 N 1.39928 * 108.91156 * 0.37979 * 17 16 15 19 19 C 1.46502 * 125.75373 * 179.79067 * 18 17 16 20 20 C 1.53182 * 109.54071 * 59.77852 * 19 18 17 21 21 C 1.53107 * 109.15666 * 183.24266 * 20 19 18 22 22 O 1.42906 * 109.48547 * 57.47534 * 21 20 19 23 23 C 1.42900 * 114.09744 * 298.89177 * 22 21 20 24 24 C 1.53092 * 109.41608 * 61.15495 * 23 22 21 25 25 C 1.34288 * 108.50052 * 359.75432 * 18 17 16 26 26 C 1.50706 * 126.30208 * 179.97438 * 25 18 17 27 27 H 4.40639 * 5.51409 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.46981 * 64.50984 * 3 2 1 29 29 H 1.09005 * 109.47166 * 304.51109 * 3 2 1 30 30 H 0.97005 * 120.00183 * 179.97438 * 8 7 5 31 31 H 1.07999 * 125.98432 * 0.03445 * 16 15 13 32 32 H 1.09000 * 109.54595 * 179.97438 * 19 18 17 33 33 H 1.08994 * 109.52674 * 303.06380 * 20 19 18 34 34 H 1.09003 * 109.52316 * 63.25466 * 20 19 18 35 35 H 1.08998 * 109.40734 * 297.49461 * 21 20 19 36 36 H 1.08996 * 109.47981 * 177.50301 * 21 20 19 37 37 H 1.08997 * 109.47969 * 301.16970 * 23 22 21 38 38 H 1.09005 * 109.47762 * 181.14127 * 23 22 21 39 39 H 1.09000 * 109.51759 * 182.48169 * 24 23 22 40 40 H 1.08999 * 109.57418 * 62.33329 * 24 23 22 41 41 H 1.08997 * 109.46988 * 270.00744 * 26 25 18 42 42 H 1.08996 * 109.46721 * 29.99884 * 26 25 18 43 43 H 1.08995 * 109.46967 * 150.00217 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3778 0.1086 5 6 3.3356 2.1241 -1.0221 6 1 3.8289 3.0825 -0.9556 7 6 2.9059 1.6478 -2.2550 8 7 2.0019 0.6958 -2.3128 9 14 3.6133 2.3609 -3.8299 10 1 4.8153 1.5851 -4.2283 11 1 2.5954 2.2850 -4.9086 12 1 3.9915 3.7791 -3.6050 13 6 3.3837 1.9105 1.3212 14 8 3.7004 3.0808 1.4176 15 6 3.2792 1.0735 2.5294 16 6 2.2150 0.2036 2.8581 17 7 2.4921 -0.3591 4.0018 18 7 3.7240 0.1229 4.4578 19 6 4.3840 -0.2614 5.7080 20 6 4.6453 -1.7708 5.7065 21 6 5.2607 -2.1755 7.0487 22 8 4.3836 -1.7928 8.1100 23 6 4.1422 -0.3865 8.1890 24 6 3.4799 0.0896 6.8935 25 6 4.2000 0.9965 3.5558 26 6 5.4996 1.7542 3.6471 27 1 -1.0502 -0.0004 -0.0002 28 1 3.0095 -0.4414 -0.9276 29 1 3.0097 -0.5814 0.8468 30 1 1.7016 0.3635 -3.1733 31 1 1.3289 0.0326 2.2648 32 1 5.3297 0.2725 5.8003 33 1 3.7051 -2.3032 5.5630 34 1 5.3333 -2.0205 4.8987 35 1 6.2211 -1.6750 7.1724 36 1 5.4079 -3.2553 7.0703 37 1 5.0879 0.1374 8.3277 38 1 3.4837 -0.1776 9.0321 39 1 3.3350 1.1692 6.9340 40 1 2.5149 -0.4030 6.7742 41 1 5.3321 2.7027 4.1573 42 1 6.2256 1.1641 4.2063 43 1 5.8809 1.9436 2.6437 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281997127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:46 Heat of formation + Delta-G solvation = 48.049899 kcal Electronic energy + Delta-G solvation = -26953.076367 eV Core-core repulsion = 23194.699904 eV Total energy + Delta-G solvation = -3758.376464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.54684 -40.39287 -39.79214 -37.07117 -35.75015 -33.95372 -33.35200 -33.06343 -32.17678 -31.33135 -28.66931 -28.05416 -26.55780 -25.80743 -24.62856 -23.25705 -22.39412 -20.61607 -20.09377 -19.70489 -18.53320 -18.16019 -17.38075 -17.06151 -16.91405 -16.46909 -16.31214 -15.92080 -15.78504 -15.65023 -15.20161 -14.83429 -14.69012 -14.47228 -14.23043 -13.93520 -13.70218 -13.65535 -13.41956 -13.34142 -13.15277 -12.75434 -12.54151 -12.43891 -12.36727 -12.15097 -12.00934 -11.89339 -11.38110 -11.23997 -11.06580 -10.70721 -10.60937 -10.38179 -10.26183 -9.86603 -9.43959 -8.27219 -5.86374 0.65373 1.25372 1.36065 1.44480 1.47958 1.56141 2.09686 2.22923 2.39428 2.39985 2.92353 3.06199 3.23386 3.41810 3.58693 3.62808 3.77464 3.88866 3.93703 3.95697 4.06464 4.23081 4.26321 4.39467 4.46278 4.56221 4.60027 4.65093 4.68574 4.70065 4.78534 4.92137 4.98592 5.02550 5.06580 5.07367 5.18255 5.42641 5.47890 5.49388 6.01058 6.07155 6.21388 6.48198 6.60189 7.14795 7.16261 7.45029 8.03762 8.68275 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024226 B = 0.003392 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.520264 B = 8253.347622 C = 8739.391424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.139 4.139 3 C 0.240 3.760 4 N -0.444 5.444 5 C -0.347 4.347 6 H 0.081 0.919 7 C 0.000 4.000 8 N -0.874 5.874 9 Si 0.990 3.010 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.515 3.485 14 O -0.628 6.628 15 C -0.291 4.291 16 C 0.069 3.931 17 N -0.307 5.307 18 N -0.349 5.349 19 C 0.150 3.850 20 C -0.159 4.159 21 C 0.068 3.932 22 O -0.400 6.400 23 C 0.069 3.931 24 C -0.160 4.160 25 C 0.132 3.868 26 C -0.084 4.084 27 H 0.233 0.767 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.272 0.728 31 H 0.181 0.819 32 H 0.133 0.867 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.424 -7.237 17.259 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.141 4.141 3 C 0.117 3.883 4 N -0.160 5.160 5 C -0.474 4.474 6 H 0.099 0.901 7 C -0.203 4.203 8 N -0.512 5.512 9 Si 0.814 3.186 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.201 1.201 13 C 0.305 3.695 14 O -0.516 6.516 15 C -0.305 4.305 16 C -0.117 4.117 17 N -0.127 5.127 18 N -0.130 5.130 19 C 0.050 3.950 20 C -0.198 4.198 21 C -0.009 4.009 22 O -0.319 6.319 23 C -0.008 4.008 24 C -0.198 4.198 25 C 0.000 4.000 26 C -0.142 4.142 27 H 0.250 0.750 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.197 0.803 32 H 0.151 0.849 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.073 -7.802 18.265 21.083 hybrid contribution -0.345 1.228 -2.297 2.627 sum 6.728 -6.574 15.968 18.533 Atomic orbital electron populations 1.25123 0.96298 1.00566 1.05270 1.23317 0.94812 0.99735 0.96237 1.18341 0.84766 0.83477 1.01676 1.43763 1.55747 1.11737 1.04753 1.19694 1.38306 1.04566 0.84827 0.90080 1.25997 0.95085 0.97552 1.01629 1.70181 1.25532 1.28849 1.26646 0.84984 0.78225 0.78459 0.76946 1.19041 1.20291 1.20117 1.17536 0.83099 0.86235 0.82595 1.90530 1.56010 1.18322 1.86774 1.20108 1.00409 1.09983 1.00019 1.24171 0.99179 0.94346 0.94038 1.76978 0.98795 1.23320 1.13571 1.48705 1.15114 1.31823 1.17362 1.21826 0.96360 0.97697 0.79113 1.22549 1.02995 0.93574 1.00677 1.22700 0.92479 1.02322 0.83405 1.87951 1.68077 1.24213 1.51663 1.22684 1.01060 0.81174 0.95902 1.22538 0.99773 1.02712 0.94805 1.21696 0.97286 0.92484 0.88506 1.20542 0.89685 0.99548 1.04446 0.75000 0.88369 0.90464 0.91751 0.80258 0.84944 0.91837 0.89618 0.90198 0.87001 0.90194 0.87073 0.90009 0.91887 0.88927 0.87215 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.61 19.00 74.32 1.41 -9.20 16 2 C -0.14 -6.48 9.15 31.13 0.28 -6.19 16 3 C 0.24 11.42 4.77 84.58 0.40 11.82 16 4 N -0.44 -23.79 2.58 -649.21 -1.68 -25.47 16 5 C -0.35 -19.86 9.45 84.07 0.79 -19.07 16 6 H 0.08 4.95 7.29 -2.91 -0.02 4.93 16 7 C 0.00 0.00 5.06 84.93 0.43 0.43 16 8 N -0.87 -45.77 8.76 21.67 0.19 -45.58 16 9 Si 0.99 42.33 29.59 68.60 2.03 44.36 16 10 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.52 27.01 7.15 86.64 0.62 27.63 16 14 O -0.63 -36.78 16.52 -4.11 -0.07 -36.85 16 15 C -0.29 -12.44 5.04 -20.15 -0.10 -12.54 16 16 C 0.07 2.75 9.79 85.66 0.84 3.58 16 17 N -0.31 -10.87 12.33 -56.25 -0.69 -11.56 16 18 N -0.35 -10.29 3.26 -311.98 -1.02 -11.30 16 19 C 0.15 2.92 2.98 45.11 0.13 3.05 16 20 C -0.16 -2.82 5.68 30.69 0.17 -2.64 16 21 C 0.07 0.85 6.84 72.02 0.49 1.35 16 22 O -0.40 -6.72 10.77 -148.98 -1.60 -8.32 16 23 C 0.07 0.88 6.84 72.01 0.49 1.38 16 24 C -0.16 -2.91 5.68 30.68 0.17 -2.74 16 25 C 0.13 4.48 7.01 42.15 0.30 4.77 16 26 C -0.08 -2.21 9.59 71.24 0.68 -1.53 16 27 H 0.23 7.60 7.80 -4.41 -0.03 7.56 16 28 H 0.10 4.92 6.22 -2.39 -0.01 4.90 16 29 H 0.08 3.34 5.73 -2.38 -0.01 3.33 16 30 H 0.27 13.47 8.31 -92.70 -0.77 12.70 16 31 H 0.18 7.31 5.37 -2.91 -0.02 7.29 16 32 H 0.13 1.76 6.63 -2.39 -0.02 1.74 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.11 1.80 7.07 -2.39 -0.02 1.79 16 43 H 0.07 2.21 7.96 -2.39 -0.02 2.19 16 Total: -1.00 -74.07 354.83 5.31 -68.76 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.02 Total: 25.88 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 7.13 Total: 0.10 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -3.20 Total: -93.92 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.67 Total: -45.17 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -74.07 5.31 -68.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281997127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.805 kcal (2) G-P(sol) polarization free energy of solvation -74.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds