Wall clock time and date at job start Tue Mar 31 2020 11:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00430 * 2 1 4 4 N 1.46499 * 109.47205 * 125.00044 * 3 2 1 5 5 C 1.46500 * 119.99999 * 269.99650 * 4 3 2 6 6 C 1.50696 * 109.47232 * 270.00537 * 5 4 3 7 7 H 1.08005 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00058 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00373 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00274 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46747 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47292 * 119.99770 * 10 8 6 13 13 H 1.48503 * 109.47245 * 239.99990 * 10 8 6 14 14 C 1.34779 * 119.99896 * 90.00143 * 4 3 2 15 15 O 1.21590 * 119.99838 * 179.97438 * 14 4 3 16 16 N 1.34774 * 120.00314 * 359.97438 * 14 4 3 17 17 C 1.39975 * 119.99982 * 184.48702 * 16 14 4 18 18 C 1.38626 * 119.99927 * 325.24715 * 17 16 14 19 19 C 1.39462 * 119.77752 * 180.02562 * 18 17 16 20 20 C 1.47868 * 120.11037 * 179.97438 * 19 18 17 21 21 N 1.34776 * 119.99619 * 180.02562 * 20 19 18 22 22 O 1.21550 * 119.99901 * 0.02562 * 20 19 18 23 23 C 1.39613 * 119.77790 * 359.97438 * 19 18 17 24 24 C 1.37974 * 119.99815 * 0.25441 * 23 19 18 25 25 C 1.38263 * 120.21849 * 359.48957 * 24 23 19 26 26 C 1.50700 * 119.88603 * 180.23154 * 25 24 23 27 27 H 1.07996 * 120.00240 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99132 * 359.97438 * 1 2 3 29 29 H 1.08009 * 119.99601 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47223 * 4.99523 * 3 2 1 31 31 H 1.09005 * 109.47073 * 244.99809 * 3 2 1 32 32 H 1.08997 * 109.46932 * 30.00090 * 5 4 3 33 33 H 1.08997 * 109.47160 * 150.00168 * 5 4 3 34 34 H 0.96992 * 120.00512 * 180.02562 * 9 8 6 35 35 H 0.96999 * 119.99625 * 4.48316 * 16 14 4 36 36 H 1.07995 * 120.11131 * 0.04556 * 18 17 16 37 37 H 0.97000 * 120.00350 * 0.02562 * 21 20 19 38 38 H 0.97001 * 119.99527 * 179.97438 * 21 20 19 39 39 H 1.08007 * 119.99886 * 179.97438 * 23 19 18 40 40 H 1.07994 * 119.89470 * 179.72490 * 24 23 19 41 41 H 1.08998 * 109.47591 * 270.27296 * 26 25 24 42 42 H 1.08996 * 109.47282 * 30.27590 * 26 25 24 43 43 H 1.09011 * 109.46595 * 150.27638 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5591 1.8649 2.4248 6 6 2.8445 3.3435 2.4803 7 1 3.3043 3.8368 1.6366 8 6 2.5197 4.0665 3.6084 9 7 1.9603 3.4659 4.6360 10 14 2.8741 5.8993 3.6775 11 1 3.5029 6.3302 2.4030 12 1 1.6041 6.6419 3.8793 13 1 3.7978 6.1827 4.8052 14 6 4.2498 0.8659 0.9823 15 8 5.0221 0.8886 1.9212 16 7 4.6498 0.3751 -0.2074 17 6 5.9218 -0.1944 -0.3377 18 6 6.9882 0.3188 0.3842 19 6 8.2537 -0.2519 0.2505 20 6 9.3965 0.2900 1.0165 21 7 10.6185 -0.2630 0.8852 22 8 9.2337 1.2341 1.7646 23 6 8.4378 -1.3366 -0.6090 24 6 7.3710 -1.8370 -1.3267 25 6 6.1153 -1.2745 -1.1901 26 6 4.9542 -1.8304 -1.9736 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3588 2.1316 0.0895 31 1 2.6215 1.4025 -0.9314 32 1 1.4890 1.6967 2.5459 33 1 3.0991 1.3603 3.2259 34 1 1.7314 3.9745 5.4295 35 1 4.0561 0.4164 -0.9734 36 1 6.8395 1.1575 1.0481 37 1 10.7485 -1.0161 0.2879 38 1 11.3683 0.0928 1.3874 39 1 9.4164 -1.7810 -0.7156 40 1 7.5163 -2.6732 -1.9944 41 1 4.8847 -1.3180 -2.9331 42 1 5.1063 -2.8966 -2.1413 43 1 4.0317 -1.6786 -1.4129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292477414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:46 Heat of formation + Delta-G solvation = -10.300443 kcal Electronic energy + Delta-G solvation = -26438.777287 eV Core-core repulsion = 22677.870563 eV Total energy + Delta-G solvation = -3760.906724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62938 -39.48845 -38.18524 -35.84591 -34.66705 -33.65032 -33.14324 -32.47895 -32.10601 -29.66082 -27.68874 -27.14383 -25.52037 -23.52515 -22.88936 -22.08806 -20.37116 -20.08344 -19.33683 -18.41227 -17.38820 -16.99394 -16.44577 -16.19280 -15.39118 -15.13487 -15.04364 -14.72732 -14.65520 -14.37747 -13.97678 -13.86567 -13.71460 -13.49297 -13.23010 -12.77582 -12.48836 -12.29393 -11.97354 -11.82147 -11.72592 -11.37575 -11.29479 -11.10122 -10.85683 -10.58495 -10.21459 -10.12987 -9.95534 -9.73542 -9.62508 -9.27488 -9.24827 -8.72883 -8.39847 -8.06410 -7.64093 -6.00771 -4.05285 0.85238 1.42634 2.36131 2.86801 3.16280 3.33730 3.42277 3.46230 3.50105 3.72906 4.02377 4.37827 4.53056 4.66334 4.73560 4.95936 5.02454 5.12966 5.21823 5.31795 5.34076 5.40334 5.45060 5.49410 5.63822 5.84918 5.91885 5.96585 6.10173 6.23188 6.33720 6.44846 6.57858 6.71700 6.75100 6.78456 6.89255 7.16319 7.29803 7.36388 7.50891 7.65723 7.96677 8.25602 8.28535 8.53609 8.95235 9.21223 9.60120 11.07267 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.004480 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.894254 B = 6248.948604 C = 8494.202113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.137 3.863 4 N -0.601 5.601 5 C 0.261 3.739 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.696 3.304 15 O -0.560 6.560 16 N -0.694 5.694 17 C 0.173 3.827 18 C -0.057 4.057 19 C -0.129 4.129 20 C 0.561 3.439 21 N -0.856 5.856 22 O -0.527 6.527 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.098 4.098 26 C -0.116 4.116 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.262 0.738 35 H 0.402 0.598 36 H 0.161 0.839 37 H 0.398 0.602 38 H 0.402 0.598 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 -13.647 -17.246 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.012 3.988 4 N -0.335 5.335 5 C 0.142 3.858 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.398 3.602 15 O -0.435 6.435 16 N -0.344 5.344 17 C 0.076 3.924 18 C -0.078 4.078 19 C -0.133 4.133 20 C 0.347 3.653 21 N -0.420 5.420 22 O -0.402 6.402 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.101 4.101 26 C -0.173 4.173 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.240 0.760 36 H 0.178 0.822 37 H 0.228 0.772 38 H 0.233 0.767 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.870 -12.895 -15.832 21.883 hybrid contribution 0.215 0.683 -0.326 0.787 sum 8.084 -12.212 -16.158 21.808 Atomic orbital electron populations 1.23831 0.95794 1.01854 1.00054 1.23436 0.96503 0.98889 1.00353 1.20536 0.93221 0.95769 0.89224 1.47595 1.08669 1.62997 1.14242 1.19257 0.95258 0.93660 0.77584 1.21483 1.40411 0.93322 1.01328 0.92382 1.24911 0.95026 0.98753 0.95283 1.69939 1.42157 1.36069 1.05159 0.86452 0.77825 0.84972 0.78234 1.19810 1.21031 1.20830 1.15994 0.83347 0.78746 0.82157 1.90942 1.52410 1.60915 1.39223 1.42988 1.15338 1.63646 1.12421 1.17280 0.84606 0.92813 0.97682 1.21637 0.89059 0.99637 0.97456 1.19696 0.93943 0.98961 1.00670 1.18329 0.83083 0.82481 0.81372 1.43734 1.10657 1.37887 1.49770 1.90885 1.84222 1.27466 1.37674 1.21083 0.98941 0.96245 0.96787 1.20647 0.91482 1.00497 1.00366 1.19863 0.96142 0.94259 0.99878 1.20771 0.96039 1.01206 0.99258 0.88717 0.88181 0.87827 0.88918 0.91644 0.94707 0.93664 0.92784 0.76022 0.82165 0.77246 0.76676 0.85982 0.85374 0.90970 0.91035 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 14.32 29.01 0.42 -1.76 16 2 C -0.17 -2.32 9.85 -36.03 -0.35 -2.68 16 3 C 0.14 2.14 5.65 -5.20 -0.03 2.11 16 4 N -0.60 -12.69 2.44 -182.19 -0.44 -13.13 16 5 C 0.26 6.88 5.16 -5.20 -0.03 6.85 16 6 C -0.53 -15.08 9.39 -34.44 -0.32 -15.41 16 7 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 10 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.70 14.91 8.12 -86.92 -0.71 14.21 16 15 O -0.56 -14.66 13.33 5.29 0.07 -14.59 16 16 N -0.69 -11.18 4.62 -14.25 -0.07 -11.24 16 17 C 0.17 2.70 6.28 -83.73 -0.53 2.17 16 18 C -0.06 -1.02 8.24 -38.98 -0.32 -1.34 16 19 C -0.13 -1.89 5.87 -104.99 -0.62 -2.51 16 20 C 0.56 8.53 8.05 -12.32 -0.10 8.43 16 21 N -0.86 -7.98 8.82 30.53 0.27 -7.72 16 22 O -0.53 -10.81 17.18 5.32 0.09 -10.72 16 23 C -0.11 -1.15 9.54 -39.17 -0.37 -1.53 16 24 C -0.11 -1.10 9.67 -39.67 -0.38 -1.48 16 25 C -0.10 -1.14 5.90 -104.35 -0.62 -1.76 16 26 C -0.12 -0.98 9.46 36.01 0.34 -0.64 16 27 H 0.09 1.00 8.06 -52.49 -0.42 0.57 16 28 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 29 H 0.10 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 31 H 0.07 0.83 6.30 -51.93 -0.33 0.50 16 32 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.40 5.12 5.53 -40.82 -0.23 4.89 16 36 H 0.16 3.62 5.78 -52.49 -0.30 3.31 16 37 H 0.40 2.31 6.86 -40.82 -0.28 2.03 16 38 H 0.40 3.21 8.93 -40.82 -0.36 2.85 16 39 H 0.12 0.79 6.40 -52.48 -0.34 0.45 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 43 H 0.07 0.62 7.16 -51.92 -0.37 0.24 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -37.69 366.04 -8.05 -45.73 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.48 Total: 8.57 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -3.72 Total: 6.38 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.50 Total: -58.27 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.16 Total: -25.31 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.69 -8.05 -45.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292477414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.431 kcal (2) G-P(sol) polarization free energy of solvation -37.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds