Wall clock time and date at job start Tue Mar 31 2020 11:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00430 * 2 1 4 4 N 1.46499 * 109.47205 * 125.00044 * 3 2 1 5 5 C 1.46500 * 119.99999 * 269.99650 * 4 3 2 6 6 C 1.50696 * 109.47232 * 270.00537 * 5 4 3 7 7 H 1.08005 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00058 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00373 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00274 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46747 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47292 * 119.99770 * 10 8 6 13 13 H 1.48503 * 109.47245 * 239.99990 * 10 8 6 14 14 C 1.34779 * 119.99896 * 90.00143 * 4 3 2 15 15 O 1.21590 * 119.99838 * 179.97438 * 14 4 3 16 16 N 1.34774 * 120.00314 * 359.97438 * 14 4 3 17 17 C 1.39975 * 119.99982 * 184.48702 * 16 14 4 18 18 C 1.38626 * 119.99927 * 325.24715 * 17 16 14 19 19 C 1.39462 * 119.77752 * 180.02562 * 18 17 16 20 20 C 1.47868 * 120.11037 * 179.97438 * 19 18 17 21 21 N 1.34776 * 119.99619 * 180.02562 * 20 19 18 22 22 O 1.21550 * 119.99901 * 0.02562 * 20 19 18 23 23 C 1.39613 * 119.77790 * 359.97438 * 19 18 17 24 24 C 1.37974 * 119.99815 * 0.25441 * 23 19 18 25 25 C 1.38263 * 120.21849 * 359.48957 * 24 23 19 26 26 C 1.50700 * 119.88603 * 180.23154 * 25 24 23 27 27 H 1.07996 * 120.00240 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99132 * 359.97438 * 1 2 3 29 29 H 1.08009 * 119.99601 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47223 * 4.99523 * 3 2 1 31 31 H 1.09005 * 109.47073 * 244.99809 * 3 2 1 32 32 H 1.08997 * 109.46932 * 30.00090 * 5 4 3 33 33 H 1.08997 * 109.47160 * 150.00168 * 5 4 3 34 34 H 0.96992 * 120.00512 * 180.02562 * 9 8 6 35 35 H 0.96999 * 119.99625 * 4.48316 * 16 14 4 36 36 H 1.07995 * 120.11131 * 0.04556 * 18 17 16 37 37 H 0.97000 * 120.00350 * 0.02562 * 21 20 19 38 38 H 0.97001 * 119.99527 * 179.97438 * 21 20 19 39 39 H 1.08007 * 119.99886 * 179.97438 * 23 19 18 40 40 H 1.07994 * 119.89470 * 179.72490 * 24 23 19 41 41 H 1.08998 * 109.47591 * 270.27296 * 26 25 24 42 42 H 1.08996 * 109.47282 * 30.27590 * 26 25 24 43 43 H 1.09011 * 109.46595 * 150.27638 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5591 1.8649 2.4248 6 6 2.8445 3.3435 2.4803 7 1 3.3043 3.8368 1.6366 8 6 2.5197 4.0665 3.6084 9 7 1.9603 3.4659 4.6360 10 14 2.8741 5.8993 3.6775 11 1 3.5029 6.3302 2.4030 12 1 1.6041 6.6419 3.8793 13 1 3.7978 6.1827 4.8052 14 6 4.2498 0.8659 0.9823 15 8 5.0221 0.8886 1.9212 16 7 4.6498 0.3751 -0.2074 17 6 5.9218 -0.1944 -0.3377 18 6 6.9882 0.3188 0.3842 19 6 8.2537 -0.2519 0.2505 20 6 9.3965 0.2900 1.0165 21 7 10.6185 -0.2630 0.8852 22 8 9.2337 1.2341 1.7646 23 6 8.4378 -1.3366 -0.6090 24 6 7.3710 -1.8370 -1.3267 25 6 6.1153 -1.2745 -1.1901 26 6 4.9542 -1.8304 -1.9736 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3588 2.1316 0.0895 31 1 2.6215 1.4025 -0.9314 32 1 1.4890 1.6967 2.5459 33 1 3.0991 1.3603 3.2259 34 1 1.7314 3.9745 5.4295 35 1 4.0561 0.4164 -0.9734 36 1 6.8395 1.1575 1.0481 37 1 10.7485 -1.0161 0.2879 38 1 11.3683 0.0928 1.3874 39 1 9.4164 -1.7810 -0.7156 40 1 7.5163 -2.6732 -1.9944 41 1 4.8847 -1.3180 -2.9331 42 1 5.1063 -2.8966 -2.1413 43 1 4.0317 -1.6786 -1.4129 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292477414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:46 Heat of formation + Delta-G solvation = -39.103649 kcal Electronic energy + Delta-G solvation = -26440.026288 eV Core-core repulsion = 22677.870563 eV Total energy + Delta-G solvation = -3762.155725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94435 -40.81183 -39.41227 -37.36829 -36.05727 -35.09013 -34.68140 -33.74117 -33.43867 -30.92093 -29.32461 -28.23770 -26.98361 -25.30280 -23.97095 -23.41183 -21.53611 -21.33275 -20.67423 -19.56478 -18.86368 -18.56499 -18.10996 -17.48432 -16.73889 -16.63185 -16.24573 -16.06100 -15.95608 -15.87525 -15.34692 -15.02348 -14.85806 -14.63553 -14.44033 -14.31914 -14.12055 -13.35786 -13.26026 -13.12483 -12.93168 -12.88370 -12.66791 -12.63177 -12.37514 -12.28054 -12.21132 -11.70487 -11.50631 -11.20142 -10.95227 -10.77679 -10.66696 -10.35282 -9.75093 -9.62596 -9.03523 -8.24180 -6.38624 -0.18319 0.37323 1.24280 1.32202 1.36577 1.47296 1.72278 1.83825 2.18051 2.36642 2.50033 2.88333 3.01402 3.06337 3.81067 3.87523 3.99634 4.06222 4.16018 4.18029 4.30059 4.35025 4.50689 4.72763 4.77838 4.87918 4.90869 4.95680 5.04275 5.15918 5.22538 5.29231 5.34712 5.42445 5.49280 5.53594 5.69034 5.72722 5.84026 5.90235 5.99492 6.03962 6.05437 6.42931 6.70013 7.00035 7.28366 7.29339 7.59785 8.82674 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.004480 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.894254 B = 6248.948604 C = 8494.202113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.186 4.186 3 C 0.133 3.867 4 N -0.607 5.607 5 C 0.282 3.718 6 C -0.543 4.543 7 H 0.049 0.951 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.263 1.263 13 H -0.285 1.285 14 C 0.691 3.309 15 O -0.620 6.620 16 N -0.672 5.672 17 C 0.139 3.861 18 C -0.097 4.097 19 C -0.150 4.150 20 C 0.554 3.446 21 N -0.821 5.821 22 O -0.599 6.599 23 C -0.085 4.085 24 C -0.100 4.100 25 C -0.081 4.081 26 C -0.117 4.117 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.030 0.970 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.419 0.581 36 H 0.096 0.904 37 H 0.420 0.580 38 H 0.412 0.588 39 H 0.173 0.827 40 H 0.182 0.818 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.374 -16.311 -21.154 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.206 4.206 3 C 0.011 3.989 4 N -0.340 5.340 5 C 0.160 3.840 6 C -0.582 4.582 7 H 0.068 0.932 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.789 3.211 11 H -0.195 1.195 12 H -0.187 1.187 13 H -0.211 1.211 14 C 0.393 3.607 15 O -0.499 6.499 16 N -0.323 5.323 17 C 0.043 3.957 18 C -0.119 4.119 19 C -0.153 4.153 20 C 0.341 3.659 21 N -0.387 5.387 22 O -0.481 6.481 23 C -0.104 4.104 24 C -0.118 4.118 25 C -0.084 4.084 26 C -0.174 4.174 27 H 0.137 0.863 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.260 0.740 36 H 0.115 0.885 37 H 0.254 0.746 38 H 0.244 0.756 39 H 0.190 0.810 40 H 0.199 0.801 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.477 -15.634 -19.859 26.659 hybrid contribution 0.105 1.366 0.798 1.586 sum 8.582 -14.268 -19.062 25.310 Atomic orbital electron populations 1.24067 0.95381 1.03034 0.97498 1.23275 0.96873 0.97856 1.02570 1.20804 0.92710 0.97097 0.88312 1.47410 1.09697 1.62853 1.14051 1.18622 0.93909 0.92313 0.79108 1.21737 1.40436 0.94579 1.01398 0.93225 1.25796 0.94665 1.03584 0.94815 1.70045 1.42848 1.37951 1.05720 0.85419 0.78324 0.79387 0.77969 1.19524 1.18742 1.21078 1.16207 0.82805 0.78644 0.83073 1.90913 1.54042 1.63176 1.41803 1.42539 1.16036 1.62857 1.10866 1.17537 0.83291 0.95029 0.99806 1.21305 0.92094 0.99730 0.98805 1.19758 0.92358 1.00816 1.02411 1.18645 0.84756 0.81816 0.80657 1.43422 1.08873 1.37386 1.49000 1.90849 1.85458 1.30843 1.40923 1.21612 1.01634 0.93400 0.93775 1.21297 0.89916 1.00791 0.99746 1.20324 0.98486 0.91900 0.97694 1.20916 0.93988 1.03019 0.99447 0.86319 0.88193 0.86893 0.89770 0.88560 0.95191 0.98712 0.92368 0.74027 0.88541 0.74635 0.75582 0.80966 0.80077 0.88592 0.88169 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 14.32 67.78 0.97 -2.72 16 2 C -0.19 -4.86 9.85 25.64 0.25 -4.60 16 3 C 0.13 4.21 5.65 85.63 0.48 4.70 16 4 N -0.61 -27.23 2.44 -848.59 -2.07 -29.30 16 5 C 0.28 15.94 5.16 85.63 0.44 16.39 16 6 C -0.54 -32.89 9.39 25.60 0.24 -32.65 16 7 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 8 C 0.01 0.63 5.46 84.65 0.46 1.10 16 9 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 10 Si 0.96 47.46 29.54 68.60 2.03 49.49 16 11 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 14 C 0.69 31.97 8.12 179.05 1.45 33.43 16 15 O -0.62 -36.10 13.33 -4.00 -0.05 -36.16 16 16 N -0.67 -22.47 4.62 -317.27 -1.46 -23.93 16 17 C 0.14 4.41 6.28 38.10 0.24 4.65 16 18 C -0.10 -3.81 8.24 22.66 0.19 -3.63 16 19 C -0.15 -4.45 5.87 -20.10 -0.12 -4.57 16 20 C 0.55 17.54 8.05 86.79 0.70 18.24 16 21 N -0.82 -14.09 8.82 -175.59 -1.55 -15.64 16 22 O -0.60 -27.08 17.18 -3.87 -0.07 -27.14 16 23 C -0.09 -1.43 9.54 22.54 0.21 -1.22 16 24 C -0.10 -1.42 9.67 22.21 0.21 -1.21 16 25 C -0.08 -1.63 5.90 -19.69 -0.12 -1.75 16 26 C -0.12 -1.44 9.46 71.24 0.67 -0.77 16 27 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 29 H 0.11 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.08 2.80 7.72 -2.39 -0.02 2.78 16 31 H 0.10 2.38 6.30 -2.38 -0.02 2.36 16 32 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 33 H -0.01 -0.35 7.42 -2.39 -0.02 -0.36 16 34 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 35 H 0.42 10.48 5.53 -92.71 -0.51 9.96 16 36 H 0.10 5.03 5.78 -2.91 -0.02 5.01 16 37 H 0.42 3.27 6.86 -92.71 -0.64 2.63 16 38 H 0.41 6.09 8.93 -92.71 -0.83 5.26 16 39 H 0.17 1.10 6.40 -2.91 -0.02 1.08 16 40 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 43 H 0.06 0.87 7.16 -2.38 -0.02 0.86 16 Total: -1.00 -95.93 366.04 2.50 -93.43 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.90 Total: 21.58 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 6.30 Total: 25.39 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -4.80 Total: -126.58 kcal Atomic # 8 Polarization: -63.18 SS G_CDS: -0.12 Total: -63.30 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -95.93 2.50 -93.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292477414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.329 kcal (2) G-P(sol) polarization free energy of solvation -95.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds