Wall clock time and date at job start Tue Mar 31 2020 11:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00256 * 2 1 4 4 N 1.46494 * 109.47141 * 124.99523 * 3 2 1 5 5 C 1.46497 * 120.00091 * 270.00175 * 4 3 2 6 6 C 1.50700 * 109.47354 * 269.99786 * 5 4 3 7 7 H 1.07999 * 119.99690 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00475 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99996 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00211 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46938 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47038 * 120.00076 * 10 8 6 13 13 H 1.48498 * 109.47273 * 240.00130 * 10 8 6 14 14 C 1.34775 * 119.99857 * 90.00194 * 4 3 2 15 15 O 1.21588 * 120.00194 * 179.97438 * 14 4 3 16 16 N 1.34779 * 120.00083 * 359.97438 * 14 4 3 17 17 C 1.39978 * 119.99976 * 175.02772 * 16 14 4 18 18 C 1.38977 * 119.99915 * 146.83968 * 17 16 14 19 19 C 1.38218 * 120.22876 * 180.02562 * 18 17 16 20 20 C 1.38023 * 120.21629 * 359.73700 * 19 18 17 21 21 C 1.50698 * 120.00455 * 180.28143 * 20 19 18 22 22 C 1.39575 * 119.99282 * 0.53838 * 20 19 18 23 23 C 1.47864 * 120.10861 * 179.74228 * 22 20 19 24 24 N 1.34777 * 119.99929 * 173.74804 * 23 22 20 25 25 O 1.21548 * 120.00364 * 353.75153 * 23 22 20 26 26 C 1.38588 * 119.99827 * 326.85838 * 17 16 14 27 27 H 1.08002 * 120.00362 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00036 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99622 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46607 * 4.99491 * 3 2 1 31 31 H 1.09000 * 109.47045 * 244.99946 * 3 2 1 32 32 H 1.08999 * 109.47183 * 29.99904 * 5 4 3 33 33 H 1.09002 * 109.47391 * 150.00342 * 5 4 3 34 34 H 0.96994 * 120.00192 * 180.02562 * 9 8 6 35 35 H 0.96991 * 119.99792 * 355.02397 * 16 14 4 36 36 H 1.08005 * 119.88673 * 0.02562 * 18 17 16 37 37 H 1.07990 * 119.89175 * 180.02562 * 19 18 17 38 38 H 1.09005 * 109.47017 * 263.56621 * 21 20 19 39 39 H 1.08997 * 109.46888 * 23.56531 * 21 20 19 40 40 H 1.08993 * 109.47727 * 143.56715 * 21 20 19 41 41 H 0.97001 * 119.99827 * 359.97438 * 24 23 22 42 42 H 0.97001 * 120.00271 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.11224 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5587 1.8649 2.4248 6 6 2.8442 3.3436 2.4804 7 1 3.3033 3.8370 1.6365 8 6 2.5183 4.0668 3.6081 9 7 1.9588 3.4661 4.6356 10 14 2.8715 5.8998 3.6767 11 1 3.4995 6.3309 2.4019 12 1 1.6008 6.6416 3.8777 13 1 3.7944 6.1842 4.8047 14 6 4.2496 0.8661 0.9825 15 8 5.0218 0.8888 1.9214 16 7 4.6496 0.3752 -0.2073 17 6 5.9820 -0.0118 -0.3925 18 6 6.2861 -1.0758 -1.2333 19 6 7.6001 -1.4623 -1.4192 20 6 8.6194 -0.7907 -0.7751 21 6 10.0508 -1.2121 -0.9862 22 6 8.3240 0.2755 0.0759 23 6 9.4137 0.9931 0.7716 24 7 9.1399 2.0988 1.4921 25 8 10.5563 0.5860 0.6938 26 6 6.9979 0.6657 0.2630 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4886 1.6967 2.5458 33 1 3.0988 1.3604 3.2260 34 1 1.7292 3.9749 5.4288 35 1 4.0142 0.2901 -0.9351 36 1 5.4930 -1.6024 -1.7433 37 1 7.8302 -2.2895 -2.0741 38 1 10.3574 -1.8751 -0.1771 39 1 10.1387 -1.7358 -1.9381 40 1 10.6916 -0.3305 -0.9960 41 1 8.2281 2.4239 1.5539 42 1 9.8548 2.5698 1.9482 43 1 6.7635 1.4923 0.9174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292875073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:04 Heat of formation + Delta-G solvation = -10.333024 kcal Electronic energy + Delta-G solvation = -26356.237527 eV Core-core repulsion = 22595.329390 eV Total energy + Delta-G solvation = -3760.908137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64726 -39.64645 -38.03939 -35.94178 -34.76007 -33.88612 -33.22825 -32.25391 -31.13437 -30.82657 -27.77460 -26.39279 -25.43254 -24.12269 -23.03479 -21.70556 -20.54621 -20.11077 -19.42962 -18.28595 -17.38230 -16.74766 -16.59151 -16.14629 -15.56046 -15.27258 -15.11044 -14.81459 -14.69383 -14.41710 -14.09282 -13.71414 -13.50263 -13.43195 -13.13590 -12.87494 -12.45051 -12.12668 -11.98273 -11.87234 -11.80100 -11.46999 -11.37105 -11.18040 -10.95149 -10.68468 -10.25718 -10.06513 -9.73270 -9.70065 -9.55893 -9.43130 -9.31227 -8.93323 -8.50447 -8.02376 -7.67559 -6.10993 -4.16249 0.88105 1.39916 2.31412 2.87835 3.11330 3.24286 3.32476 3.35656 3.60171 3.63377 3.99471 4.28997 4.43127 4.76409 4.86332 5.01298 5.07394 5.18851 5.23261 5.27592 5.38683 5.40437 5.49983 5.77165 5.82465 5.87583 5.89151 6.04531 6.09980 6.21488 6.30404 6.53586 6.63380 6.66285 6.70552 6.83784 6.85689 7.08312 7.28411 7.40312 7.41061 7.56550 7.86165 8.15065 8.30709 8.44274 8.84379 9.10116 9.49326 10.96918 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.004191 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.094832 B = 6679.155533 C = 8749.898789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 C 0.135 3.865 4 N -0.600 5.600 5 C 0.261 3.739 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.698 3.302 15 O -0.568 6.568 16 N -0.696 5.696 17 C 0.167 3.833 18 C -0.124 4.124 19 C -0.112 4.112 20 C -0.050 4.050 21 C -0.115 4.115 22 C -0.127 4.127 23 C 0.568 3.432 24 N -0.848 5.848 25 O -0.544 6.544 26 C -0.084 4.084 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.403 0.597 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.407 0.593 42 H 0.403 0.597 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.079 -7.621 -14.201 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C 0.011 3.989 4 N -0.334 5.334 5 C 0.142 3.858 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.400 3.600 15 O -0.444 6.444 16 N -0.346 5.346 17 C 0.071 3.929 18 C -0.146 4.146 19 C -0.130 4.130 20 C -0.052 4.052 21 C -0.171 4.171 22 C -0.130 4.130 23 C 0.355 3.645 24 N -0.411 5.411 25 O -0.424 6.424 26 C -0.105 4.105 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.238 0.762 42 H 0.234 0.766 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.118 -7.866 -13.387 16.688 hybrid contribution -0.717 1.292 0.096 1.481 sum 5.401 -6.574 -13.291 15.781 Atomic orbital electron populations 1.23839 0.95809 1.01891 0.99879 1.23441 0.96562 0.98892 1.00521 1.20557 0.93237 0.95764 0.89306 1.47599 1.08916 1.62568 1.14309 1.19260 0.95339 0.93633 0.77583 1.21464 1.40677 0.93278 1.01265 0.92380 1.24921 0.95040 0.98709 0.95319 1.69939 1.41913 1.36104 1.05201 0.86461 0.77975 0.84972 0.78092 1.19838 1.20974 1.20868 1.15960 0.83382 0.78639 0.82051 1.90900 1.52935 1.61646 1.38945 1.43003 1.08909 1.67974 1.14697 1.17364 0.83537 0.94108 0.97896 1.21028 0.97294 0.95378 1.00868 1.20743 0.91385 1.00132 1.00776 1.19920 0.96663 0.93826 0.94815 1.21001 0.92284 1.03048 1.00779 1.19574 0.92687 0.99214 1.01570 1.18230 0.88059 0.80098 0.78152 1.43837 1.14319 1.29517 1.53456 1.90729 1.22131 1.67079 1.62415 1.21441 0.90296 0.99674 0.99091 0.88687 0.88172 0.87781 0.88919 0.91389 0.94743 0.93673 0.92708 0.76040 0.85466 0.85240 0.91084 0.92770 0.89023 0.76235 0.76645 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 14.32 29.02 0.42 -1.66 16 2 C -0.17 -2.24 9.85 -36.02 -0.35 -2.60 16 3 C 0.14 1.99 5.57 -5.20 -0.03 1.96 16 4 N -0.60 -11.78 2.44 -182.19 -0.44 -12.23 16 5 C 0.26 6.46 5.16 -5.20 -0.03 6.43 16 6 C -0.53 -14.15 9.39 -34.44 -0.32 -14.47 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 10 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 C 0.70 13.67 8.02 -86.92 -0.70 12.97 16 15 O -0.57 -13.34 13.58 5.29 0.07 -13.27 16 16 N -0.70 -10.25 5.18 -14.26 -0.07 -10.33 16 17 C 0.17 2.42 6.28 -83.73 -0.53 1.89 16 18 C -0.12 -1.43 9.95 -39.31 -0.39 -1.83 16 19 C -0.11 -1.25 9.65 -39.67 -0.38 -1.63 16 20 C -0.05 -0.66 5.91 -104.20 -0.62 -1.28 16 21 C -0.11 -1.37 8.72 36.00 0.31 -1.05 16 22 C -0.13 -1.87 5.87 -104.99 -0.62 -2.49 16 23 C 0.57 8.50 7.97 -12.32 -0.10 8.40 16 24 N -0.85 -10.61 8.82 30.53 0.27 -10.34 16 25 O -0.54 -9.10 14.17 5.32 0.08 -9.02 16 26 C -0.08 -1.31 8.13 -38.98 -0.32 -1.63 16 27 H 0.09 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 29 H 0.10 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.09 1.43 7.72 -51.93 -0.40 1.03 16 31 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 35 H 0.40 4.64 6.62 -40.82 -0.27 4.36 16 36 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.13 1.07 8.05 -52.49 -0.42 0.65 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.50 8.04 -51.93 -0.42 0.09 16 40 H 0.09 1.23 5.85 -51.93 -0.30 0.93 16 41 H 0.41 5.02 6.90 -40.82 -0.28 4.74 16 42 H 0.40 4.23 8.93 -40.82 -0.36 3.87 16 43 H 0.15 2.49 4.77 -52.49 -0.25 2.24 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -33.14 363.69 -8.15 -41.29 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.50 Total: 12.71 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -3.75 Total: 4.64 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.49 Total: -57.78 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: 0.15 Total: -22.29 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.14 -8.15 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292875073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.958 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds