Wall clock time and date at job start Tue Mar 31 2020 11:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00256 * 2 1 4 4 N 1.46494 * 109.47141 * 124.99523 * 3 2 1 5 5 C 1.46497 * 120.00091 * 270.00175 * 4 3 2 6 6 C 1.50700 * 109.47354 * 269.99786 * 5 4 3 7 7 H 1.07999 * 119.99690 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00475 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99996 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00211 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46938 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47038 * 120.00076 * 10 8 6 13 13 H 1.48498 * 109.47273 * 240.00130 * 10 8 6 14 14 C 1.34775 * 119.99857 * 90.00194 * 4 3 2 15 15 O 1.21588 * 120.00194 * 179.97438 * 14 4 3 16 16 N 1.34779 * 120.00083 * 359.97438 * 14 4 3 17 17 C 1.39978 * 119.99976 * 175.02772 * 16 14 4 18 18 C 1.38977 * 119.99915 * 146.83968 * 17 16 14 19 19 C 1.38218 * 120.22876 * 180.02562 * 18 17 16 20 20 C 1.38023 * 120.21629 * 359.73700 * 19 18 17 21 21 C 1.50698 * 120.00455 * 180.28143 * 20 19 18 22 22 C 1.39575 * 119.99282 * 0.53838 * 20 19 18 23 23 C 1.47864 * 120.10861 * 179.74228 * 22 20 19 24 24 N 1.34777 * 119.99929 * 173.74804 * 23 22 20 25 25 O 1.21548 * 120.00364 * 353.75153 * 23 22 20 26 26 C 1.38588 * 119.99827 * 326.85838 * 17 16 14 27 27 H 1.08002 * 120.00362 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00036 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99622 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46607 * 4.99491 * 3 2 1 31 31 H 1.09000 * 109.47045 * 244.99946 * 3 2 1 32 32 H 1.08999 * 109.47183 * 29.99904 * 5 4 3 33 33 H 1.09002 * 109.47391 * 150.00342 * 5 4 3 34 34 H 0.96994 * 120.00192 * 180.02562 * 9 8 6 35 35 H 0.96991 * 119.99792 * 355.02397 * 16 14 4 36 36 H 1.08005 * 119.88673 * 0.02562 * 18 17 16 37 37 H 1.07990 * 119.89175 * 180.02562 * 19 18 17 38 38 H 1.09005 * 109.47017 * 263.56621 * 21 20 19 39 39 H 1.08997 * 109.46888 * 23.56531 * 21 20 19 40 40 H 1.08993 * 109.47727 * 143.56715 * 21 20 19 41 41 H 0.97001 * 119.99827 * 359.97438 * 24 23 22 42 42 H 0.97001 * 120.00271 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.11224 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5587 1.8649 2.4248 6 6 2.8442 3.3436 2.4804 7 1 3.3033 3.8370 1.6365 8 6 2.5183 4.0668 3.6081 9 7 1.9588 3.4661 4.6356 10 14 2.8715 5.8998 3.6767 11 1 3.4995 6.3309 2.4019 12 1 1.6008 6.6416 3.8777 13 1 3.7944 6.1842 4.8047 14 6 4.2496 0.8661 0.9825 15 8 5.0218 0.8888 1.9214 16 7 4.6496 0.3752 -0.2073 17 6 5.9820 -0.0118 -0.3925 18 6 6.2861 -1.0758 -1.2333 19 6 7.6001 -1.4623 -1.4192 20 6 8.6194 -0.7907 -0.7751 21 6 10.0508 -1.2121 -0.9862 22 6 8.3240 0.2755 0.0759 23 6 9.4137 0.9931 0.7716 24 7 9.1399 2.0988 1.4921 25 8 10.5563 0.5860 0.6938 26 6 6.9979 0.6657 0.2630 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4886 1.6967 2.5458 33 1 3.0988 1.3604 3.2260 34 1 1.7292 3.9749 5.4288 35 1 4.0142 0.2901 -0.9351 36 1 5.4930 -1.6024 -1.7433 37 1 7.8302 -2.2895 -2.0741 38 1 10.3574 -1.8751 -0.1771 39 1 10.1387 -1.7358 -1.9381 40 1 10.6916 -0.3305 -0.9960 41 1 8.2281 2.4239 1.5539 42 1 9.8548 2.5698 1.9482 43 1 6.7635 1.4923 0.9174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292875073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:03 Heat of formation + Delta-G solvation = -32.982336 kcal Electronic energy + Delta-G solvation = -26357.219675 eV Core-core repulsion = 22595.329390 eV Total energy + Delta-G solvation = -3761.890285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88521 -40.93063 -39.21243 -37.33192 -36.08125 -35.05898 -34.93943 -33.72885 -32.27821 -31.88365 -29.53543 -27.50650 -26.82326 -25.32614 -24.69463 -22.84273 -21.71715 -21.27522 -20.68706 -19.49967 -18.77613 -18.52586 -17.86267 -17.49151 -16.70266 -16.62898 -16.44396 -16.04006 -15.96859 -15.85866 -15.41049 -14.87665 -14.82035 -14.49549 -14.38165 -14.16913 -14.11605 -13.33167 -13.27411 -13.06789 -12.93721 -12.85846 -12.77413 -12.61368 -12.49800 -12.25557 -12.18808 -11.65157 -11.29822 -10.99803 -10.82014 -10.67883 -10.62822 -10.33532 -9.96090 -9.56676 -8.91747 -8.19557 -6.34002 -0.16384 0.33815 1.26706 1.38509 1.40494 1.51760 1.73741 1.85479 2.20875 2.40356 2.54422 2.87593 3.03596 3.11221 3.74417 3.89010 4.00702 4.03565 4.20576 4.23851 4.34442 4.40233 4.50612 4.76593 4.80665 4.86406 4.91834 4.96151 5.05463 5.11046 5.19928 5.28944 5.34227 5.47145 5.52976 5.63943 5.70693 5.75703 5.84640 5.92066 5.99817 6.08194 6.08832 6.29223 6.75502 7.03453 7.20304 7.33158 7.62391 8.87139 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.004191 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.094832 B = 6679.155533 C = 8749.898789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.187 4.187 3 C 0.132 3.868 4 N -0.606 5.606 5 C 0.281 3.719 6 C -0.538 4.538 7 H 0.055 0.945 8 C 0.011 3.989 9 N -0.928 5.928 10 Si 0.964 3.036 11 H -0.266 1.266 12 H -0.273 1.273 13 H -0.284 1.284 14 C 0.695 3.305 15 O -0.616 6.616 16 N -0.674 5.674 17 C 0.142 3.858 18 C -0.105 4.105 19 C -0.101 4.101 20 C -0.056 4.056 21 C -0.111 4.111 22 C -0.145 4.145 23 C 0.560 3.440 24 N -0.839 5.839 25 O -0.567 6.567 26 C -0.101 4.101 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.024 0.976 33 H -0.001 1.001 34 H 0.266 0.734 35 H 0.420 0.580 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.408 0.592 42 H 0.411 0.589 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -8.632 -17.017 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.207 4.207 3 C 0.010 3.990 4 N -0.339 5.339 5 C 0.159 3.841 6 C -0.577 4.577 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.568 5.568 10 Si 0.789 3.211 11 H -0.190 1.190 12 H -0.198 1.198 13 H -0.210 1.210 14 C 0.397 3.603 15 O -0.496 6.496 16 N -0.325 5.325 17 C 0.047 3.953 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.058 4.058 21 C -0.167 4.167 22 C -0.149 4.149 23 C 0.348 3.652 24 N -0.402 5.402 25 O -0.449 6.449 26 C -0.123 4.123 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.042 0.958 33 H 0.017 0.983 34 H 0.075 0.925 35 H 0.261 0.739 36 H 0.184 0.816 37 H 0.188 0.812 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.239 0.761 42 H 0.243 0.757 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.684 -8.881 -16.278 19.395 hybrid contribution -0.584 1.537 0.929 1.888 sum 5.101 -7.344 -15.349 17.764 Atomic orbital electron populations 1.24060 0.95569 1.02918 0.97790 1.23329 0.96875 0.98129 1.02327 1.20800 0.92819 0.96745 0.88638 1.47398 1.10000 1.62522 1.13962 1.18637 0.93806 0.92506 0.79124 1.21729 1.40325 0.94346 1.01266 0.92658 1.25783 0.94765 1.03361 0.94918 1.70055 1.42945 1.37939 1.05826 0.85416 0.78079 0.79450 0.78132 1.19010 1.19812 1.20954 1.16104 0.82797 0.78552 0.82885 1.90869 1.54220 1.63465 1.41043 1.42596 1.09555 1.66951 1.13375 1.17627 0.82703 0.95614 0.99364 1.21408 0.98638 0.93587 0.98913 1.21195 0.90431 1.00260 1.00016 1.20265 0.98009 0.93236 0.94256 1.20958 0.91111 1.02374 1.02236 1.19644 0.92079 1.00418 1.02740 1.18461 0.88004 0.80453 0.78295 1.43782 1.14655 1.28981 1.52791 1.90713 1.22856 1.67836 1.63492 1.21303 0.91330 0.99912 0.99744 0.86617 0.88228 0.86818 0.89893 0.88152 0.95794 0.98262 0.92515 0.73945 0.81640 0.81162 0.91659 0.89534 0.90944 0.76132 0.75663 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 14.32 67.78 0.97 -2.58 16 2 C -0.19 -4.47 9.85 25.65 0.25 -4.22 16 3 C 0.13 3.75 5.57 85.63 0.48 4.22 16 4 N -0.61 -24.15 2.44 -848.59 -2.07 -26.22 16 5 C 0.28 14.50 5.16 85.63 0.44 14.94 16 6 C -0.54 -29.62 9.39 25.60 0.24 -29.38 16 7 H 0.06 3.01 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -54.66 13.29 21.45 0.28 -54.37 16 10 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.69 27.66 8.02 179.05 1.44 29.10 16 15 O -0.62 -30.38 13.58 -3.99 -0.05 -30.43 16 16 N -0.67 -19.02 5.18 -317.28 -1.64 -20.66 16 17 C 0.14 3.92 6.28 38.10 0.24 4.16 16 18 C -0.10 -2.02 9.95 22.44 0.22 -1.80 16 19 C -0.10 -1.84 9.65 22.21 0.21 -1.63 16 20 C -0.06 -1.36 5.91 -19.59 -0.12 -1.48 16 21 C -0.11 -2.43 8.72 71.24 0.62 -1.81 16 22 C -0.15 -4.30 5.87 -20.10 -0.12 -4.42 16 23 C 0.56 17.34 7.97 86.79 0.69 18.04 16 24 N -0.84 -22.15 8.82 -175.59 -1.55 -23.70 16 25 O -0.57 -19.44 14.17 -3.87 -0.05 -19.50 16 26 C -0.10 -3.23 8.13 22.66 0.18 -3.04 16 27 H 0.12 2.02 8.06 -2.91 -0.02 1.99 16 28 H 0.10 2.14 7.84 -2.91 -0.02 2.12 16 29 H 0.11 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.08 2.51 7.72 -2.39 -0.02 2.49 16 31 H 0.10 2.13 6.44 -2.39 -0.02 2.12 16 32 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 33 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 34 H 0.27 14.73 8.31 -92.71 -0.77 13.95 16 35 H 0.42 8.56 6.62 -92.72 -0.61 7.94 16 36 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.17 1.77 8.05 -2.92 -0.02 1.75 16 38 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.09 1.31 8.04 -2.39 -0.02 1.29 16 40 H 0.07 1.91 5.85 -2.39 -0.01 1.90 16 41 H 0.41 10.88 6.90 -92.71 -0.64 10.24 16 42 H 0.41 9.09 8.93 -92.71 -0.83 8.27 16 43 H 0.12 4.39 4.77 -2.91 -0.01 4.38 16 Total: -1.00 -75.80 363.69 2.15 -73.65 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -1.01 Total: 34.55 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 6.22 Total: 21.16 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -4.98 Total: -124.96 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.11 Total: -49.93 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -75.80 2.15 -73.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292875073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.668 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds