Wall clock time and date at job start Tue Mar 31 2020 11:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99735 * 2 1 4 4 N 1.46500 * 109.47149 * 124.99554 * 3 2 1 5 5 C 1.46504 * 120.00006 * 274.81149 * 4 3 2 6 6 C 1.50693 * 109.47439 * 263.67679 * 5 4 3 7 7 H 1.08004 * 120.00184 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99922 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99995 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99783 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47144 * 59.99803 * 10 8 6 12 12 H 1.48505 * 109.46759 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47392 * 299.99788 * 10 8 6 14 14 C 1.34776 * 120.00118 * 94.81795 * 4 3 2 15 15 O 1.21359 * 119.99700 * 354.61545 * 14 4 3 16 16 C 1.49357 * 120.00454 * 174.61280 * 14 4 3 17 17 O 1.21380 * 119.99179 * 0.05225 * 16 14 4 18 18 N 1.34768 * 120.00316 * 180.02562 * 16 14 4 19 19 C 1.39750 * 120.00251 * 185.09267 * 18 16 14 20 20 C 1.39334 * 120.49182 * 327.17531 * 19 18 16 21 21 C 1.38495 * 118.35326 * 179.74826 * 20 19 18 22 22 C 1.38274 * 119.24390 * 0.50627 * 21 20 19 23 23 C 1.50697 * 119.53782 * 179.73853 * 22 21 20 24 24 N 1.31870 * 120.92961 * 359.75901 * 22 21 20 25 25 C 1.31806 * 121.80225 * 359.97438 * 24 22 21 26 26 C 1.50696 * 119.67279 * 180.02562 * 25 24 22 27 27 H 1.08004 * 120.00672 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99765 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00469 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47223 * 4.99723 * 3 2 1 31 31 H 1.09001 * 109.47320 * 244.99291 * 3 2 1 32 32 H 1.09002 * 109.46979 * 23.68386 * 5 4 3 33 33 H 1.09007 * 109.46429 * 143.67602 * 5 4 3 34 34 H 0.96993 * 120.00370 * 180.02562 * 9 8 6 35 35 H 0.97003 * 119.99968 * 5.09313 * 18 16 14 36 36 H 1.08001 * 120.82505 * 359.97438 * 20 19 18 37 37 H 1.08007 * 120.37298 * 180.24043 * 21 20 19 38 38 H 1.09006 * 109.47303 * 270.02245 * 23 22 21 39 39 H 1.09008 * 109.47066 * 30.02002 * 23 22 21 40 40 H 1.09001 * 109.47448 * 150.02057 * 23 22 21 41 41 H 1.08997 * 109.47544 * 269.98300 * 26 25 24 42 42 H 1.09004 * 109.47116 * 29.98037 * 26 25 24 43 43 H 1.08996 * 109.47309 * 149.97883 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5292 1.7662 2.4514 6 6 2.8595 3.2236 2.6459 7 1 3.3646 3.7718 1.8643 8 6 2.5171 3.8572 3.8216 9 7 1.9017 3.1898 4.7731 10 14 2.9260 5.6639 4.0624 11 1 2.2518 6.4682 3.0118 12 1 2.4553 6.1038 5.4004 13 1 4.3953 5.8560 3.9662 14 6 4.2766 0.9575 0.9582 15 8 4.6380 0.5057 -0.1087 16 6 5.2537 1.0984 2.0790 17 8 4.8919 1.5493 3.1462 18 7 6.5367 0.7243 1.9055 19 6 7.4257 0.7558 2.9833 20 6 7.2955 1.7216 3.9792 21 6 8.1976 1.7086 5.0300 22 6 9.1961 0.7524 5.0512 23 6 10.1848 0.7358 6.1884 24 7 9.2958 -0.1451 4.0902 25 6 8.4555 -0.1719 3.0750 26 6 8.6136 -1.2194 2.0033 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3584 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 1.4505 1.6256 2.5214 33 1 3.0234 1.1755 3.2228 34 1 1.6605 3.6355 5.6001 35 1 6.8433 0.4332 1.0324 36 1 6.5084 2.4597 3.9347 37 1 8.1244 2.4397 5.8215 38 1 11.0393 1.3640 5.9362 39 1 9.7071 1.1175 7.0908 40 1 10.5233 -0.2859 6.3608 41 1 9.2676 -0.8402 1.2181 42 1 9.0500 -2.1194 2.4364 43 1 7.6375 -1.4564 1.5801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293310106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:05 Heat of formation + Delta-G solvation = 2.528537 kcal Electronic energy + Delta-G solvation = -26732.787789 eV Core-core repulsion = 22972.437372 eV Total energy + Delta-G solvation = -3760.350418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92405 -39.76946 -38.03803 -36.05607 -35.03927 -33.39496 -33.02755 -32.12557 -31.51213 -28.98524 -27.62379 -27.02066 -25.91980 -23.70442 -22.81665 -22.31566 -21.23854 -19.95137 -19.26149 -17.73702 -16.90731 -16.63704 -16.14471 -15.96847 -15.37941 -15.31010 -14.81638 -14.73333 -14.47404 -14.26586 -13.76593 -13.52882 -13.28271 -13.20849 -12.93809 -12.68701 -12.33313 -12.26806 -12.13725 -11.94942 -11.83707 -11.66165 -11.53158 -11.20935 -10.96209 -10.87050 -10.59599 -10.46282 -10.07435 -9.78142 -9.55525 -9.34079 -9.20520 -8.69031 -8.32970 -8.04007 -7.88462 -6.07585 -4.10174 1.09661 1.44461 2.07367 2.38471 2.91717 3.27519 3.32468 3.34630 3.69042 3.93610 4.06430 4.28632 4.40732 4.77309 4.88600 4.96983 5.12582 5.24200 5.28798 5.37546 5.42878 5.52682 5.53894 5.57279 5.60679 5.73720 5.77048 5.91673 6.04326 6.04489 6.19307 6.20077 6.42649 6.45199 6.54763 6.82337 6.94142 6.96347 7.26429 7.33271 7.46695 7.79906 8.00483 8.08552 8.13099 8.25665 8.57127 8.89378 9.52195 11.01283 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.004948 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.379893 B = 5656.980913 C = 7753.844628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.140 3.860 4 N -0.554 5.554 5 C 0.230 3.770 6 C -0.516 4.516 7 H 0.053 0.947 8 C 0.071 3.929 9 N -0.889 5.889 10 Si 0.892 3.108 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.508 3.492 15 O -0.559 6.559 16 C 0.488 3.512 17 O -0.428 6.428 18 N -0.655 5.655 19 C 0.103 3.897 20 C -0.075 4.075 21 C -0.155 4.155 22 C 0.102 3.898 23 C -0.097 4.097 24 N -0.470 5.470 25 C 0.103 3.897 26 C -0.104 4.104 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.263 0.737 35 H 0.417 0.583 36 H 0.160 0.840 37 H 0.136 0.864 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.299 -5.926 -3.598 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.284 5.284 5 C 0.112 3.888 6 C -0.555 4.555 7 H 0.072 0.928 8 C -0.132 4.132 9 N -0.527 5.527 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.291 3.709 15 O -0.440 6.440 16 C 0.269 3.731 17 O -0.294 6.294 18 N -0.304 5.304 19 C 0.005 3.995 20 C -0.102 4.102 21 C -0.175 4.175 22 C -0.036 4.036 23 C -0.155 4.155 24 N -0.180 5.180 25 C -0.038 4.038 26 C -0.161 4.161 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.178 0.822 37 H 0.154 0.846 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.657 -6.390 -3.129 11.995 hybrid contribution -0.483 1.614 -0.122 1.689 sum 9.173 -4.776 -3.251 10.841 Atomic orbital electron populations 1.23806 0.95726 1.01782 1.00948 1.23286 0.96121 0.98965 0.99512 1.20617 0.92211 0.95422 0.90013 1.48278 1.07112 1.59614 1.13360 1.19944 0.95917 0.96321 0.76662 1.21141 1.38739 0.94199 1.01409 0.92847 1.24790 0.94944 0.97948 0.95530 1.69899 1.40117 1.36365 1.06360 0.86665 0.78824 0.85242 0.77278 1.20347 1.21192 1.20308 1.19720 0.83893 0.79969 0.87365 1.90657 1.78981 1.46820 1.27584 1.20470 0.82636 0.80115 0.89874 1.90979 1.76399 1.36161 1.25909 1.43152 1.08616 1.66630 1.11997 1.18549 0.93043 0.96389 0.91480 1.22006 0.98614 0.96791 0.92825 1.21886 0.95588 1.00426 0.99650 1.21148 0.95709 0.91938 0.94829 1.20629 0.97114 1.03311 0.94408 1.67264 1.25739 1.23596 1.01410 1.21018 0.92533 0.94890 0.95384 1.20665 1.02887 0.96918 0.95659 0.88296 0.88669 0.87608 0.89321 0.89550 0.94780 0.91804 0.92734 0.74514 0.82236 0.84633 0.90821 0.90862 0.90810 0.90457 0.90185 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 14.32 29.02 0.42 -2.10 16 2 C -0.16 -2.48 9.84 -36.02 -0.35 -2.84 16 3 C 0.14 2.43 5.83 -5.19 -0.03 2.40 16 4 N -0.55 -11.46 2.46 -176.98 -0.44 -11.90 16 5 C 0.23 5.58 4.78 -5.19 -0.02 5.56 16 6 C -0.52 -13.60 7.78 -34.44 -0.27 -13.87 16 7 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 8 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 9 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 10 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.51 10.25 7.67 -11.63 -0.09 10.16 16 15 O -0.56 -11.09 16.04 5.49 0.09 -11.00 16 16 C 0.49 9.66 7.59 -11.63 -0.09 9.57 16 17 O -0.43 -9.81 9.45 5.47 0.05 -9.76 16 18 N -0.65 -10.65 4.79 -10.20 -0.05 -10.70 16 19 C 0.10 1.67 6.33 -83.59 -0.53 1.15 16 20 C -0.07 -1.28 8.83 -39.08 -0.34 -1.63 16 21 C -0.16 -2.28 9.73 -39.47 -0.38 -2.67 16 22 C 0.10 1.43 6.78 -82.56 -0.56 0.87 16 23 C -0.10 -0.98 10.16 36.00 0.37 -0.61 16 24 N -0.47 -7.03 10.18 -5.57 -0.06 -7.09 16 25 C 0.10 1.51 6.80 -82.36 -0.56 0.95 16 26 C -0.10 -1.16 9.63 36.00 0.35 -0.82 16 27 H 0.10 1.29 7.84 -52.48 -0.41 0.88 16 28 H 0.09 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.09 1.51 7.76 -51.93 -0.40 1.11 16 31 H 0.09 1.44 7.36 -51.93 -0.38 1.06 16 32 H 0.03 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.06 1.70 5.85 -51.93 -0.30 1.39 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.42 5.83 7.24 -40.82 -0.30 5.53 16 36 H 0.16 3.12 6.14 -52.49 -0.32 2.80 16 37 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.63 8.08 -51.92 -0.42 0.21 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.80 7.13 -51.93 -0.37 0.43 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -30.62 366.90 -7.19 -37.81 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.83 Total: 7.61 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -2.20 Total: 7.92 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.20 Total: -54.18 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.14 Total: -20.75 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.62 -7.19 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293310106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.340 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds