Wall clock time and date at job start Tue Mar 31 2020 11:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99735 * 2 1 4 4 N 1.46500 * 109.47149 * 124.99554 * 3 2 1 5 5 C 1.46504 * 120.00006 * 274.81149 * 4 3 2 6 6 C 1.50693 * 109.47439 * 263.67679 * 5 4 3 7 7 H 1.08004 * 120.00184 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99922 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99995 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99783 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47144 * 59.99803 * 10 8 6 12 12 H 1.48505 * 109.46759 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47392 * 299.99788 * 10 8 6 14 14 C 1.34776 * 120.00118 * 94.81795 * 4 3 2 15 15 O 1.21359 * 119.99700 * 354.61545 * 14 4 3 16 16 C 1.49357 * 120.00454 * 174.61280 * 14 4 3 17 17 O 1.21380 * 119.99179 * 0.05225 * 16 14 4 18 18 N 1.34768 * 120.00316 * 180.02562 * 16 14 4 19 19 C 1.39750 * 120.00251 * 185.09267 * 18 16 14 20 20 C 1.39334 * 120.49182 * 327.17531 * 19 18 16 21 21 C 1.38495 * 118.35326 * 179.74826 * 20 19 18 22 22 C 1.38274 * 119.24390 * 0.50627 * 21 20 19 23 23 C 1.50697 * 119.53782 * 179.73853 * 22 21 20 24 24 N 1.31870 * 120.92961 * 359.75901 * 22 21 20 25 25 C 1.31806 * 121.80225 * 359.97438 * 24 22 21 26 26 C 1.50696 * 119.67279 * 180.02562 * 25 24 22 27 27 H 1.08004 * 120.00672 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99765 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00469 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47223 * 4.99723 * 3 2 1 31 31 H 1.09001 * 109.47320 * 244.99291 * 3 2 1 32 32 H 1.09002 * 109.46979 * 23.68386 * 5 4 3 33 33 H 1.09007 * 109.46429 * 143.67602 * 5 4 3 34 34 H 0.96993 * 120.00370 * 180.02562 * 9 8 6 35 35 H 0.97003 * 119.99968 * 5.09313 * 18 16 14 36 36 H 1.08001 * 120.82505 * 359.97438 * 20 19 18 37 37 H 1.08007 * 120.37298 * 180.24043 * 21 20 19 38 38 H 1.09006 * 109.47303 * 270.02245 * 23 22 21 39 39 H 1.09008 * 109.47066 * 30.02002 * 23 22 21 40 40 H 1.09001 * 109.47448 * 150.02057 * 23 22 21 41 41 H 1.08997 * 109.47544 * 269.98300 * 26 25 24 42 42 H 1.09004 * 109.47116 * 29.98037 * 26 25 24 43 43 H 1.08996 * 109.47309 * 149.97883 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5292 1.7662 2.4514 6 6 2.8595 3.2236 2.6459 7 1 3.3646 3.7718 1.8643 8 6 2.5171 3.8572 3.8216 9 7 1.9017 3.1898 4.7731 10 14 2.9260 5.6639 4.0624 11 1 2.2518 6.4682 3.0118 12 1 2.4553 6.1038 5.4004 13 1 4.3953 5.8560 3.9662 14 6 4.2766 0.9575 0.9582 15 8 4.6380 0.5057 -0.1087 16 6 5.2537 1.0984 2.0790 17 8 4.8919 1.5493 3.1462 18 7 6.5367 0.7243 1.9055 19 6 7.4257 0.7558 2.9833 20 6 7.2955 1.7216 3.9792 21 6 8.1976 1.7086 5.0300 22 6 9.1961 0.7524 5.0512 23 6 10.1848 0.7358 6.1884 24 7 9.2958 -0.1451 4.0902 25 6 8.4555 -0.1719 3.0750 26 6 8.6136 -1.2194 2.0033 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3584 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 1.4505 1.6256 2.5214 33 1 3.0234 1.1755 3.2228 34 1 1.6605 3.6355 5.6001 35 1 6.8433 0.4332 1.0324 36 1 6.5084 2.4597 3.9347 37 1 8.1244 2.4397 5.8215 38 1 11.0393 1.3640 5.9362 39 1 9.7071 1.1175 7.0908 40 1 10.5233 -0.2859 6.3608 41 1 9.2676 -0.8402 1.2181 42 1 9.0500 -2.1194 2.4364 43 1 7.6375 -1.4564 1.5801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293310106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:04 Heat of formation + Delta-G solvation = -16.022530 kcal Electronic energy + Delta-G solvation = -26733.592224 eV Core-core repulsion = 22972.437372 eV Total energy + Delta-G solvation = -3761.154853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31221 -41.16326 -39.54587 -37.62741 -36.38442 -35.04472 -34.23772 -33.81360 -32.72194 -29.94660 -29.45795 -28.41216 -27.20028 -25.37988 -24.37331 -23.61004 -22.44253 -21.29262 -20.62858 -19.24206 -18.58601 -18.39700 -17.51867 -17.41575 -16.91949 -16.68205 -16.31128 -16.08299 -16.01707 -15.60468 -15.13207 -14.71368 -14.67215 -14.31369 -14.23840 -14.09523 -14.03549 -13.56029 -13.25467 -13.06029 -13.00005 -12.94851 -12.86185 -12.81082 -12.70659 -12.39596 -12.29354 -11.92568 -11.82523 -11.68856 -10.86327 -10.62135 -10.54646 -10.41219 -10.01254 -9.69192 -9.17587 -8.14657 -6.23092 -0.14535 0.20347 0.55627 1.10042 1.38607 1.39869 1.46993 1.57571 2.16606 2.39397 2.61997 2.71333 3.19349 3.24013 3.35212 3.67950 3.84394 3.99892 4.02036 4.14483 4.22688 4.45044 4.50315 4.65130 4.71884 4.74312 4.75836 4.81020 4.83796 4.91475 5.01985 5.08127 5.15880 5.21389 5.26437 5.35478 5.44935 5.66693 5.73573 5.76160 5.83122 6.01321 6.10294 6.27028 6.71036 6.80484 6.93392 7.02916 7.42662 8.93636 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.004948 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.379893 B = 5656.980913 C = 7753.844628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.184 4.184 3 C 0.137 3.863 4 N -0.560 5.560 5 C 0.252 3.748 6 C -0.517 4.517 7 H 0.046 0.954 8 C 0.024 3.976 9 N -0.921 5.921 10 Si 0.949 3.051 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.279 1.279 14 C 0.507 3.493 15 O -0.555 6.555 16 C 0.487 3.513 17 O -0.467 6.467 18 N -0.635 5.635 19 C 0.079 3.921 20 C -0.094 4.094 21 C -0.162 4.162 22 C 0.106 3.894 23 C -0.095 4.095 24 N -0.480 5.480 25 C 0.108 3.892 26 C -0.103 4.103 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.020 0.980 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.428 0.572 36 H 0.129 0.871 37 H 0.154 0.846 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.502 -6.288 -4.006 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C 0.016 3.984 4 N -0.289 5.289 5 C 0.131 3.869 6 C -0.556 4.556 7 H 0.064 0.936 8 C -0.175 4.175 9 N -0.561 5.561 10 Si 0.774 3.226 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.204 1.204 14 C 0.289 3.711 15 O -0.436 6.436 16 C 0.268 3.732 17 O -0.337 6.337 18 N -0.285 5.285 19 C -0.018 4.018 20 C -0.122 4.122 21 C -0.182 4.182 22 C -0.032 4.032 23 C -0.152 4.152 24 N -0.191 5.191 25 C -0.032 4.032 26 C -0.160 4.160 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.268 0.732 36 H 0.147 0.853 37 H 0.172 0.828 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.891 -6.770 -3.588 13.316 hybrid contribution -0.792 1.662 -0.014 1.841 sum 10.098 -5.109 -3.602 11.876 Atomic orbital electron populations 1.24066 0.95068 1.03217 0.97626 1.23145 0.96770 0.97852 1.02511 1.20779 0.91952 0.96729 0.88920 1.48224 1.07913 1.59777 1.13025 1.19411 0.94480 0.95024 0.77941 1.21310 1.37936 0.95178 1.01140 0.93584 1.25495 0.94950 1.01735 0.95356 1.70006 1.41407 1.37886 1.06783 0.85764 0.78392 0.80878 0.77524 1.19267 1.20711 1.20449 1.19813 0.83867 0.79844 0.87542 1.90645 1.78878 1.46670 1.27390 1.20514 0.83576 0.79848 0.89231 1.90975 1.77231 1.38372 1.27120 1.42929 1.07478 1.65400 1.12708 1.18679 0.94011 0.97473 0.91650 1.21906 0.98814 0.97000 0.94486 1.22113 0.95363 1.01324 0.99444 1.21795 0.95575 0.90630 0.95242 1.20749 0.96768 1.04248 0.93441 1.67432 1.25858 1.24021 1.01790 1.21507 0.91234 0.94640 0.95851 1.20776 1.03684 0.96308 0.95208 0.87725 0.86284 0.87731 0.89328 0.88985 0.96166 0.94277 0.92789 0.73189 0.85305 0.82788 0.88997 0.89164 0.90214 0.88239 0.89127 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 14.32 67.79 0.97 -3.17 16 2 C -0.18 -5.58 9.84 25.65 0.25 -5.33 16 3 C 0.14 4.78 5.83 85.63 0.50 5.28 16 4 N -0.56 -23.62 2.46 -832.19 -2.05 -25.67 16 5 C 0.25 12.63 4.78 85.63 0.41 13.04 16 6 C -0.52 -27.93 7.78 25.60 0.20 -27.73 16 7 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 8 C 0.02 1.33 5.46 84.66 0.46 1.79 16 9 N -0.92 -53.48 13.29 21.45 0.28 -53.19 16 10 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 C 0.51 20.75 7.67 87.24 0.67 21.42 16 15 O -0.55 -21.80 16.04 -3.28 -0.05 -21.85 16 16 C 0.49 19.89 7.59 87.24 0.66 20.55 16 17 O -0.47 -22.50 9.45 -3.34 -0.03 -22.53 16 18 N -0.64 -20.91 4.79 -304.53 -1.46 -22.37 16 19 C 0.08 2.58 6.33 38.30 0.24 2.82 16 20 C -0.09 -3.35 8.83 22.60 0.20 -3.15 16 21 C -0.16 -4.72 9.73 22.34 0.22 -4.51 16 22 C 0.11 2.78 6.78 42.56 0.29 3.07 16 23 C -0.09 -1.66 10.16 71.23 0.72 -0.93 16 24 N -0.48 -13.61 10.18 -171.55 -1.75 -15.36 16 25 C 0.11 3.06 6.80 42.72 0.29 3.35 16 26 C -0.10 -2.09 9.63 71.23 0.69 -1.40 16 27 H 0.10 2.56 7.84 -2.91 -0.02 2.53 16 28 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.10 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.09 3.03 7.76 -2.39 -0.02 3.01 16 31 H 0.09 3.05 7.36 -2.39 -0.02 3.03 16 32 H 0.02 1.06 8.02 -2.39 -0.02 1.04 16 33 H 0.04 2.19 5.85 -2.38 -0.01 2.17 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.43 11.76 7.24 -92.71 -0.67 11.09 16 36 H 0.13 5.39 6.14 -2.91 -0.02 5.37 16 37 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.54 7.13 -2.39 -0.02 1.52 16 Total: -1.00 -66.89 366.90 4.11 -62.77 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.36 Total: 27.33 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 6.77 Total: 25.10 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -4.96 Total: -116.59 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.08 Total: -44.38 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -66.89 4.11 -62.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293310106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.750 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds