Wall clock time and date at job start Tue Mar 31 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35285 * 126.70554 * 2 1 4 4 C 1.41963 * 103.95524 * 179.97438 * 3 2 1 5 5 N 1.39878 * 126.87973 * 179.97438 * 4 3 2 6 6 C 1.36739 * 124.95236 * 226.94028 * 5 4 3 7 7 C 1.50701 * 125.55861 * 0.02562 * 6 5 4 8 8 C 1.34413 * 108.87795 * 179.97438 * 6 5 4 9 9 C 1.46727 * 106.51430 * 0.02562 * 8 6 5 10 10 C 1.47252 * 126.88884 * 179.97438 * 9 8 6 11 11 O 1.21624 * 120.00372 * 186.78725 * 10 9 8 12 12 N 1.34787 * 119.99922 * 6.79141 * 10 9 8 13 13 C 1.46492 * 119.99897 * 5.13608 * 12 10 9 14 14 C 1.46499 * 119.99683 * 185.40756 * 12 10 9 15 15 C 1.50700 * 109.47292 * 269.72140 * 14 12 10 16 16 H 1.08009 * 119.99691 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00522 * 180.02562 * 15 14 12 18 18 N 1.31509 * 120.00113 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99474 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46912 * 90.00361 * 19 17 15 21 21 H 1.48497 * 109.47127 * 209.99840 * 19 17 15 22 22 H 1.48501 * 109.47315 * 330.00221 * 19 17 15 23 23 C 1.35515 * 124.95134 * 47.19061 * 5 4 3 24 24 C 1.50693 * 125.85780 * 0.04239 * 23 5 4 25 25 N 1.30658 * 106.23289 * 0.25967 * 4 3 2 26 26 O 1.20916 * 111.49176 * 359.53974 * 25 4 3 27 27 H 1.09005 * 109.46967 * 90.00384 * 1 2 3 28 28 H 1.09000 * 109.47045 * 209.99770 * 1 2 3 29 29 H 1.08998 * 109.47279 * 330.00503 * 1 2 3 30 30 H 1.07994 * 128.01596 * 359.97438 * 3 2 1 31 31 H 1.09006 * 109.46879 * 265.18949 * 7 6 5 32 32 H 1.09002 * 109.47545 * 25.18702 * 7 6 5 33 33 H 1.08998 * 109.47347 * 145.18719 * 7 6 5 34 34 H 1.07999 * 126.73859 * 180.02562 * 8 6 5 35 35 H 1.09004 * 109.46699 * 275.91947 * 13 12 10 36 36 H 1.09000 * 109.47635 * 35.91554 * 13 12 10 37 37 H 1.08999 * 109.47167 * 155.92081 * 13 12 10 38 38 H 1.08995 * 109.47435 * 29.72183 * 14 12 10 39 39 H 1.09002 * 109.46889 * 149.72776 * 14 12 10 40 40 H 0.97000 * 119.99784 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.47115 * 270.19737 * 24 23 5 42 42 H 1.09003 * 109.47134 * 30.19379 * 24 23 5 43 43 H 1.09001 * 109.47461 * 150.20199 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3155 1.0846 0.0000 4 6 3.6247 0.5356 0.0006 5 7 4.8316 1.2428 0.0004 6 6 5.8945 0.9781 -0.8181 7 6 5.9511 -0.1133 -1.8558 8 6 6.8801 1.8509 -0.5470 9 6 6.3832 2.7214 0.5245 10 6 7.1031 3.8360 1.1631 11 8 6.6198 4.3997 2.1265 12 7 8.2976 4.2317 0.6801 13 6 8.8277 3.6298 -0.5458 14 6 9.0685 5.2593 1.3843 15 6 8.6939 6.6195 0.8545 16 1 7.9551 6.7095 0.0718 17 6 9.2942 7.7491 1.3690 18 7 8.9669 8.9361 0.9070 19 14 10.5725 7.5933 2.7222 20 1 11.9210 7.4550 2.1157 21 1 10.5371 8.8059 3.5786 22 1 10.2758 6.3952 3.5479 23 6 5.1196 2.2871 0.8146 24 6 4.2034 2.8712 1.8587 25 7 3.4764 -0.7625 -0.0048 26 8 2.3084 -1.0750 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 2.0310 2.1264 -0.0004 31 1 6.4227 -0.9978 -1.4274 32 1 4.9397 -0.3610 -2.1782 33 1 6.5317 0.2293 -2.7122 34 1 7.8476 1.9014 -1.0242 35 1 9.3365 2.6972 -0.3020 36 1 8.0079 3.4269 -1.2350 37 1 9.5330 4.3173 -1.0126 38 1 8.8485 5.2115 2.4507 39 1 10.1331 5.0879 1.2248 40 1 9.3896 9.7307 1.2687 41 1 3.5982 3.6597 1.4110 42 1 3.5512 2.0895 2.2481 43 1 4.7979 3.2872 2.6721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299520890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:37 Heat of formation + Delta-G solvation = 98.611229 kcal Electronic energy + Delta-G solvation = -26437.641575 eV Core-core repulsion = 22681.457615 eV Total energy + Delta-G solvation = -3756.183960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.46284 -41.55038 -38.53902 -35.04507 -34.82930 -33.94786 -32.66629 -32.48300 -30.84604 -29.23637 -28.35397 -28.21868 -26.34985 -24.63127 -24.06213 -23.04874 -22.03903 -20.83811 -19.24382 -18.16912 -18.03092 -17.38101 -16.85893 -16.77621 -15.61227 -15.31726 -15.14864 -14.55957 -14.43390 -14.16743 -13.80021 -13.73959 -13.69799 -13.29825 -13.19263 -13.03209 -12.93601 -12.59226 -12.40772 -12.29792 -12.25612 -12.20664 -11.68002 -11.58771 -11.37851 -11.11769 -10.92931 -10.65771 -10.40586 -10.03903 -9.86592 -9.46441 -8.94367 -8.57125 -8.52475 -8.02693 -7.51717 -6.01661 -3.99337 0.88323 1.37021 2.09756 2.20376 2.46165 2.63912 3.32046 3.40014 3.45117 3.91872 4.01250 4.15572 4.19509 4.43889 4.46148 4.70907 4.75808 4.86876 4.88485 5.08586 5.11256 5.24817 5.28675 5.30830 5.41129 5.43887 5.48171 5.63468 5.72711 5.73645 5.79068 5.88612 5.95993 6.04532 6.27769 6.33190 6.74827 6.82262 6.95801 7.09815 7.18596 7.48843 7.69335 7.76251 8.40665 8.55660 9.02613 9.15108 9.59239 11.11992 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024578 B = 0.003026 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.935792 B = 9251.995079 C = 9893.482796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.017 4.017 3 C -0.225 4.225 4 C 0.235 3.765 5 N -0.376 5.376 6 C 0.017 3.983 7 C -0.079 4.079 8 C -0.168 4.168 9 C -0.196 4.196 10 C 0.582 3.418 11 O -0.544 6.544 12 N -0.590 5.590 13 C 0.074 3.926 14 C 0.217 3.783 15 C -0.523 4.523 16 H 0.075 0.925 17 C 0.071 3.929 18 N -0.900 5.900 19 Si 0.874 3.126 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.264 1.264 23 C 0.105 3.895 24 C -0.093 4.093 25 N -0.358 5.358 26 O 0.114 5.886 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.180 0.820 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.042 -21.337 -5.311 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C -0.248 4.248 4 C -0.012 4.012 5 N -0.057 5.057 6 C -0.088 4.088 7 C -0.137 4.137 8 C -0.191 4.191 9 C -0.206 4.206 10 C 0.370 3.630 11 O -0.423 6.423 12 N -0.321 5.321 13 C -0.070 4.070 14 C 0.096 3.904 15 C -0.562 4.562 16 H 0.093 0.907 17 C -0.131 4.131 18 N -0.539 5.539 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.188 1.188 23 C -0.006 4.006 24 C -0.150 4.150 25 N -0.062 5.062 26 O 0.046 5.954 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.198 0.802 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.187 0.813 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.613 -22.032 -4.807 26.871 hybrid contribution 0.492 0.885 0.501 1.129 sum -14.121 -21.147 -4.306 25.790 Atomic orbital electron populations 1.20410 0.83169 1.05135 1.04534 1.24390 0.96595 0.85499 1.01528 1.22400 0.89773 1.01932 1.10708 1.20311 0.87420 0.88489 1.04935 1.40144 1.09196 1.25647 1.30749 1.20416 0.87545 1.02196 0.98625 1.20297 1.02481 0.95224 0.95662 1.22681 0.99726 0.96563 1.00153 1.20445 0.94927 1.01965 1.03265 1.17122 0.80805 0.81734 0.83343 1.90700 1.66510 1.56598 1.28511 1.47552 1.19280 1.39648 1.25579 1.22196 0.99699 0.97539 0.87531 1.19669 0.90161 0.86842 0.93680 1.21358 1.24281 0.88810 1.21752 0.90729 1.24859 0.96750 0.95110 0.96395 1.69901 1.43251 0.97749 1.42965 0.86867 0.81950 0.78272 0.82784 1.20163 1.21020 1.18808 1.20455 0.95925 0.89355 0.94877 1.20624 0.97902 0.99683 0.96814 1.74140 0.97216 1.14219 1.20649 1.84890 1.10486 1.32589 1.67484 0.88955 0.89420 0.88562 0.80220 0.90755 0.92326 0.89849 0.81309 0.93614 0.90736 0.90892 0.94177 0.95672 0.92669 0.90323 0.92402 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.45 36.00 0.38 0.16 16 2 C -0.02 -0.12 7.48 -35.36 -0.26 -0.39 16 3 C -0.23 -2.16 10.03 -39.21 -0.39 -2.55 16 4 C 0.24 3.03 6.42 -154.52 -0.99 2.04 16 5 N -0.38 -5.61 2.93 -54.17 -0.16 -5.76 16 6 C 0.02 0.23 6.82 -81.75 -0.56 -0.32 16 7 C -0.08 -0.85 9.93 36.01 0.36 -0.49 16 8 C -0.17 -2.54 8.72 -37.51 -0.33 -2.87 16 9 C -0.20 -3.64 6.06 -103.35 -0.63 -4.26 16 10 C 0.58 13.10 7.65 -12.59 -0.10 13.00 16 11 O -0.54 -13.94 14.42 5.26 0.08 -13.86 16 12 N -0.59 -13.11 2.86 -184.30 -0.53 -13.64 16 13 C 0.07 1.24 8.65 59.84 0.52 1.76 16 14 C 0.22 5.53 4.17 -5.19 -0.02 5.51 16 15 C -0.52 -15.49 9.94 -34.44 -0.34 -15.83 16 16 H 0.07 2.43 8.06 -52.48 -0.42 2.01 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 19 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 23 C 0.10 1.75 6.86 -81.51 -0.56 1.19 16 24 C -0.09 -1.37 9.08 36.00 0.33 -1.04 16 25 N -0.36 -4.50 11.59 31.24 0.36 -4.14 16 26 O 0.11 1.13 11.19 17.06 0.19 1.32 16 27 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.63 7.40 -51.93 -0.38 0.25 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.17 2.16 4.75 -52.49 -0.25 1.91 16 35 H 0.05 0.64 7.43 -51.93 -0.39 0.25 16 36 H 0.07 1.14 5.19 -51.93 -0.27 0.87 16 37 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 38 H 0.04 1.09 6.55 -51.93 -0.34 0.75 16 39 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.06 0.71 7.42 -51.93 -0.39 0.33 16 43 H 0.11 1.88 6.35 -51.93 -0.33 1.55 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -37.26 356.79 -6.97 -44.23 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.70 Total: -1.21 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.70 Total: -2.11 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.45 Total: -51.04 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.27 Total: -12.54 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.26 -6.97 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299520890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.845 kcal (2) G-P(sol) polarization free energy of solvation -37.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds