Wall clock time and date at job start Tue Mar 31 2020 11:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48498 * 109.47435 * 240.00036 * 3 2 1 5 5 H 1.48502 * 109.47455 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47119 * 120.00469 * 3 2 1 7 7 C 1.37880 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99979 * 175.27868 * 7 2 1 9 9 C 1.50697 * 119.99729 * 355.55829 * 7 2 1 10 10 C 1.52998 * 115.54853 * 274.98797 * 9 7 2 11 11 N 1.46493 * 109.47606 * 294.33524 * 10 9 7 12 12 S 1.65595 * 120.00439 * 159.13435 * 11 10 9 13 13 O 1.42101 * 104.28061 * 181.06936 * 12 11 10 14 14 O 1.42096 * 104.27910 * 308.92824 * 12 11 10 15 15 C 1.81404 * 104.44979 * 65.00030 * 12 11 10 16 16 C 1.52994 * 109.47106 * 180.02562 * 15 12 11 17 17 C 1.53003 * 109.47069 * 179.97438 * 16 15 12 18 18 C 1.53172 * 109.54733 * 294.55641 * 17 16 15 19 19 C 1.53089 * 109.16456 * 183.15110 * 18 17 16 20 20 O 1.42899 * 109.41515 * 57.61286 * 19 18 17 21 21 C 1.42912 * 114.09538 * 298.83848 * 20 19 18 22 22 C 1.53089 * 109.41243 * 61.15991 * 21 20 19 23 23 C 1.52999 * 117.49827 * 129.32527 * 9 7 2 24 24 C 1.52998 * 117.49954 * 60.66535 * 9 7 2 25 25 H 0.97001 * 120.00377 * 4.99678 * 1 2 3 26 26 H 1.09001 * 109.47033 * 54.33686 * 10 9 7 27 27 H 1.09003 * 109.47087 * 174.32890 * 10 9 7 28 28 H 0.97003 * 120.00052 * 339.13370 * 11 10 9 29 29 H 1.08998 * 109.46714 * 300.00122 * 15 12 11 30 30 H 1.09001 * 109.46995 * 60.00334 * 15 12 11 31 31 H 1.08997 * 109.47557 * 299.99962 * 16 15 12 32 32 H 1.08998 * 109.47638 * 60.00269 * 16 15 12 33 33 H 1.08997 * 109.53932 * 54.82651 * 17 16 15 34 34 H 1.09008 * 109.52043 * 303.06098 * 18 17 16 35 35 H 1.09002 * 109.52122 * 63.24307 * 18 17 16 36 36 H 1.08995 * 109.48337 * 297.62370 * 19 18 17 37 37 H 1.09008 * 109.47569 * 177.58992 * 19 18 17 38 38 H 1.09000 * 109.47695 * 301.17750 * 21 20 19 39 39 H 1.08998 * 109.48528 * 181.14912 * 21 20 19 40 40 H 1.09004 * 109.52061 * 182.48308 * 22 21 20 41 41 H 1.09003 * 109.52255 * 62.30108 * 22 21 20 42 42 H 1.09001 * 117.50026 * 359.97438 * 23 9 7 43 43 H 1.08999 * 117.50119 * 145.02174 * 23 9 7 44 44 H 1.09004 * 117.49455 * 214.98044 * 24 9 7 45 45 H 1.09002 * 117.49844 * 359.96940 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0819 -1.1955 -0.0775 9 6 1.2545 -2.4972 0.1000 10 6 0.9145 -2.9551 1.5197 11 7 2.1509 -3.2607 2.2435 12 16 2.1587 -3.2762 3.8994 13 8 3.5046 -3.5787 4.2407 14 8 1.5719 -2.0346 4.2643 15 6 1.0644 -4.6528 4.3444 16 6 0.9875 -4.7712 5.8678 17 6 0.0639 -5.9319 6.2432 18 6 -1.3669 -5.6125 5.7994 19 6 -2.2965 -6.7428 6.2486 20 8 -2.2074 -6.8959 7.6666 21 6 -0.9024 -7.2418 8.1352 22 6 0.0832 -6.1316 7.7618 23 6 1.5762 -3.5789 -0.9331 24 6 0.2486 -2.8205 -1.0066 25 1 -0.4851 0.8368 -0.0732 26 1 0.3765 -2.1615 2.0383 27 1 0.2901 -3.8474 1.4739 28 1 2.9650 -3.4540 1.7529 29 1 0.0675 -4.4684 3.9439 30 1 1.4581 -5.5795 3.9270 31 1 1.9842 -4.9552 6.2688 32 1 0.5935 -3.8445 6.2850 33 1 0.4049 -6.8428 5.7513 34 1 -1.6881 -4.6746 6.2528 35 1 -1.4001 -5.5233 4.7136 36 1 -1.9995 -7.6724 5.7632 37 1 -3.3229 -6.5004 5.9729 38 1 -0.5872 -8.1780 7.6745 39 1 -0.9245 -7.3592 9.2187 40 1 1.0871 -6.4137 8.0795 41 1 -0.2087 -5.2043 8.2549 42 1 2.3300 -3.3479 -1.6857 43 1 1.5451 -4.6168 -0.6015 44 1 -0.6554 -3.3597 -0.7232 45 1 0.1290 -2.0903 -1.8071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330357701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:36 Heat of formation + Delta-G solvation = -139.288499 kcal Electronic energy + Delta-G solvation = -25285.104708 eV Core-core repulsion = 21621.755842 eV Total energy + Delta-G solvation = -3663.348866 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.38923 -38.76349 -38.05592 -36.96268 -36.66745 -34.82532 -33.88178 -32.29858 -31.83085 -27.82924 -26.71627 -26.57866 -24.47395 -23.08414 -22.79443 -21.14920 -20.99471 -20.11956 -18.68388 -18.13220 -17.45963 -17.12191 -16.89641 -16.79454 -16.60661 -16.21549 -15.72614 -15.55385 -15.23395 -15.01647 -14.75859 -14.40683 -14.02138 -13.72393 -13.68399 -13.46954 -13.17575 -13.07445 -13.03582 -12.95600 -12.85780 -12.81988 -12.51157 -12.38595 -12.21737 -11.95497 -11.93036 -11.61249 -11.33922 -11.32052 -11.13849 -10.94618 -10.44230 -10.36614 -10.15400 -9.85186 -8.08904 -6.18462 -0.63817 1.36894 1.41884 1.45788 1.89155 2.42076 2.88705 3.02034 3.20263 3.32267 3.47529 3.58515 3.68532 3.79280 4.02838 4.06556 4.12594 4.27243 4.35254 4.46114 4.49989 4.54731 4.61721 4.65726 4.71036 4.74346 4.75651 4.79980 4.83938 4.89635 4.95651 5.02662 5.09727 5.18035 5.21680 5.37577 5.38327 5.43883 5.70365 5.79709 5.85279 6.29394 6.31231 6.44697 6.86820 7.49066 8.97517 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.003267 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.287120 B = 8568.780334 C = 8955.546839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.505 4.505 8 H 0.048 0.952 9 C 0.002 3.998 10 C 0.165 3.835 11 N -1.102 6.102 12 S 2.603 3.397 13 O -0.998 6.998 14 O -1.007 7.007 15 C -0.601 4.601 16 C -0.115 4.115 17 C -0.077 4.077 18 C -0.162 4.162 19 C 0.058 3.942 20 O -0.409 6.409 21 C 0.057 3.943 22 C -0.156 4.156 23 C -0.181 4.181 24 C -0.151 4.151 25 H 0.259 0.741 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.417 0.583 29 H 0.149 0.851 30 H 0.168 0.832 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -18.102 12.027 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.000 4.000 10 C 0.039 3.961 11 N -0.860 5.860 12 S 2.701 3.299 13 O -0.989 6.989 14 O -0.997 6.997 15 C -0.734 4.734 16 C -0.154 4.154 17 C -0.097 4.097 18 C -0.200 4.200 19 C -0.018 4.018 20 O -0.328 6.328 21 C -0.019 4.019 22 C -0.194 4.194 23 C -0.218 4.218 24 C -0.190 4.190 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.251 0.749 29 H 0.167 0.833 30 H 0.186 0.814 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.613 -17.253 12.842 21.666 hybrid contribution 0.564 1.121 -0.854 1.518 sum -2.049 -16.131 11.989 20.203 Atomic orbital electron populations 1.70022 1.06521 1.27110 1.50207 1.25537 0.95613 1.01392 0.94822 0.86024 0.78885 0.80792 0.78434 1.19383 1.20844 1.20907 1.20665 0.92538 0.90615 1.50490 0.93403 1.19035 1.00042 0.93365 0.87572 1.20733 0.84047 0.97863 0.93486 1.55057 1.19195 1.87235 1.24549 1.04858 0.75047 0.76958 0.73013 1.93511 1.35416 1.86813 1.83145 1.93551 1.80353 1.42844 1.82977 1.30428 1.17221 1.19561 1.06226 1.21511 1.02475 1.01116 0.90334 1.21144 0.94208 0.98040 0.96261 1.22399 0.95240 0.99721 1.02620 1.22686 1.00686 0.97653 0.80807 1.87907 1.31019 1.90840 1.23039 1.22719 0.82145 0.96465 1.00606 1.22317 1.01282 1.00322 0.95469 1.23028 0.98758 0.96556 1.03483 1.22420 0.92349 1.01626 1.02610 0.93219 0.93658 0.90657 0.74883 0.83311 0.81434 0.89283 0.91055 0.88775 0.91989 0.89455 0.91812 0.88389 0.91908 0.87952 0.89040 0.91752 0.91008 0.87869 0.89817 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.10 12.65 21.45 0.27 -50.83 16 2 C 0.03 1.50 5.43 84.66 0.46 1.96 16 3 Si 0.93 44.93 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.51 -27.05 8.75 25.60 0.22 -26.82 16 8 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 9 C 0.00 0.08 1.49 -52.93 -0.08 0.00 16 10 C 0.17 6.41 6.00 86.38 0.52 6.92 16 11 N -1.10 -37.91 5.77 -187.50 -1.08 -38.99 16 12 S 2.60 83.15 5.46 -56.49 -0.31 82.84 16 13 O -1.00 -36.02 18.08 -127.65 -2.31 -38.33 16 14 O -1.01 -42.91 17.44 -127.65 -2.23 -45.14 16 15 C -0.60 -11.38 5.84 71.98 0.42 -10.96 16 16 C -0.12 -2.07 4.69 30.59 0.14 -1.93 16 17 C -0.08 -1.10 2.27 -10.67 -0.02 -1.12 16 18 C -0.16 -2.52 5.10 30.68 0.16 -2.37 16 19 C 0.06 0.86 6.84 72.01 0.49 1.35 16 20 O -0.41 -7.56 10.77 -148.98 -1.60 -9.16 16 21 C 0.06 0.75 6.84 72.01 0.49 1.24 16 22 C -0.16 -2.09 5.42 30.68 0.17 -1.93 16 23 C -0.18 -6.76 9.96 30.62 0.30 -6.46 16 24 C -0.15 -6.45 9.15 30.62 0.28 -6.17 16 25 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 26 H 0.04 2.08 7.60 -2.39 -0.02 2.07 16 27 H 0.08 2.24 8.09 -2.39 -0.02 2.22 16 28 H 0.42 13.85 8.66 -96.75 -0.84 13.01 16 29 H 0.15 2.50 6.66 -2.39 -0.02 2.48 16 30 H 0.17 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.09 1.19 6.75 -2.39 -0.02 1.18 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 42 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -73.66 374.82 -1.54 -75.21 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.13 Total: 23.73 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 3.56 Total: -46.28 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -0.81 Total: -89.82 kcal Atomic # 8 Polarization: -86.49 SS G_CDS: -6.14 Total: -92.63 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 83.15 SS G_CDS: -0.31 Total: 82.84 kcal Total: -73.66 -1.54 -75.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330357701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.081 kcal (2) G-P(sol) polarization free energy of solvation -73.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds