Wall clock time and date at job start Tue Mar 31 2020 11:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33725 * 125.72444 * 2 1 4 4 C 1.34871 * 109.76993 * 180.02562 * 3 2 1 5 5 C 1.43205 * 125.77672 * 180.02562 * 4 3 2 6 6 N 4.69825 * 150.61559 * 359.96663 * 2 1 3 7 7 C 1.36179 * 108.43371 * 359.75879 * 4 3 2 8 8 C 1.36549 * 125.72328 * 180.02562 * 2 1 3 9 9 C 1.47771 * 126.67243 * 359.92897 * 8 2 1 10 10 O 1.35242 * 120.00309 * 180.02562 * 9 8 2 11 11 N 1.30131 * 119.99929 * 0.02562 * 9 8 2 12 12 C 1.46504 * 119.99911 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46954 * 114.99496 * 12 11 9 14 14 C 1.53076 * 109.45095 * 64.79057 * 13 12 11 15 15 C 1.53183 * 109.29478 * 181.24164 * 14 13 12 16 16 N 1.46930 * 108.89468 * 305.57480 * 15 14 13 17 17 C 1.36937 * 120.63259 * 233.51494 * 16 15 14 18 18 H 1.08000 * 119.99761 * 151.83401 * 17 16 15 19 19 C 1.38806 * 120.00219 * 331.83653 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46925 * 118.73328 * 53.53726 * 16 15 14 26 26 C 1.53033 * 109.45824 * 184.99714 * 13 12 11 27 27 H 1.09002 * 109.46839 * 269.96563 * 1 2 3 28 28 H 1.09003 * 109.46778 * 29.95237 * 1 2 3 29 29 H 1.08991 * 109.47222 * 149.95931 * 1 2 3 30 30 H 1.08005 * 126.70837 * 180.22739 * 7 4 3 31 31 H 0.96707 * 113.99682 * 359.97438 * 10 9 8 32 32 H 1.08997 * 109.47204 * 355.00068 * 12 11 9 33 33 H 1.08997 * 109.47276 * 234.99297 * 12 11 9 34 34 H 1.08990 * 109.46253 * 304.97651 * 13 12 11 35 35 H 1.09005 * 109.39190 * 61.36070 * 14 13 12 36 36 H 1.09004 * 109.62337 * 301.25863 * 14 13 12 37 37 H 1.09005 * 109.58619 * 185.72200 * 15 14 13 38 38 H 1.08998 * 109.58733 * 65.43770 * 15 14 13 39 39 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58688 * 66.18006 * 25 16 15 41 41 H 1.08996 * 109.58570 * 186.45714 * 25 16 15 42 42 H 1.09003 * 109.49897 * 58.66711 * 26 13 12 43 43 H 1.09004 * 109.50093 * 298.57181 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2878 1.0856 0.0000 4 6 3.5846 0.7149 -0.0006 5 6 4.7089 1.6018 -0.0002 6 7 5.6008 2.3053 -0.0013 7 6 3.6435 -0.6456 0.0045 8 6 2.3043 -1.1086 -0.0005 9 6 1.8574 -2.5171 0.0003 10 8 2.7692 -3.5159 0.0002 11 7 0.5864 -2.7964 0.0012 12 6 0.1433 -4.1928 0.0015 13 6 -0.5910 -4.4946 1.3094 14 6 -1.8713 -3.6585 1.3798 15 6 -2.5877 -3.9402 2.7042 16 7 -2.8017 -5.3883 2.8308 17 6 -4.0521 -5.8900 3.0758 18 1 -4.3132 -6.8804 2.7332 19 6 -4.9840 -5.1257 3.7644 20 7 -4.5913 -4.0827 4.4649 21 14 -6.7953 -5.5771 3.6971 22 1 -6.9738 -6.7827 2.8485 23 1 -7.2860 -5.8614 5.0695 24 1 -7.5661 -4.4465 3.1200 25 6 -1.6486 -6.2877 2.6899 26 6 -0.9443 -5.9826 1.3641 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3633 0.8905 -0.5131 29 1 -0.3633 -0.8895 -0.5144 30 1 4.5365 -1.2531 0.0089 31 1 3.6868 -3.2107 -0.0008 32 1 1.0091 -4.8488 -0.0887 33 1 -0.5291 -4.3609 -0.8398 34 1 0.0514 -4.2426 2.1531 35 1 -2.5243 -3.9258 0.5489 36 1 -1.6207 -2.5994 1.3199 37 1 -3.5489 -3.4264 2.7162 38 1 -1.9745 -3.5876 3.5335 39 1 -5.2424 -3.5488 4.9464 40 1 -0.9566 -6.1270 3.5166 41 1 -1.9898 -7.3229 2.6951 42 1 -0.0328 -6.5759 1.2915 43 1 -1.6070 -6.2300 0.5348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331235785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:04 Heat of formation + Delta-G solvation = 37.549201 kcal Electronic energy + Delta-G solvation = -25851.492997 eV Core-core repulsion = 22092.661189 eV Total energy + Delta-G solvation = -3758.831808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.35578 -39.15974 -37.62687 -37.15708 -34.86332 -34.04467 -32.91238 -32.20100 -30.52449 -29.68345 -28.14565 -26.86660 -24.49044 -22.87766 -22.46812 -22.03933 -21.24463 -20.53154 -20.04752 -18.97334 -17.09074 -16.80586 -16.67902 -16.19828 -15.53681 -14.86876 -14.66558 -14.53589 -14.02785 -13.99683 -13.93143 -13.73443 -13.42342 -13.40802 -13.11077 -12.99499 -12.90518 -12.83256 -12.56026 -12.28331 -12.11442 -11.63983 -11.25420 -10.95182 -10.88734 -10.67045 -10.51426 -10.16803 -10.08481 -9.93113 -9.66185 -9.53400 -9.23482 -9.17536 -8.58754 -8.40195 -6.58256 -5.72355 -3.14454 0.46534 1.11741 1.43319 2.43423 2.66604 2.88235 3.30165 3.40174 3.47937 3.50276 3.62938 4.01600 4.14613 4.31501 4.54756 4.89645 5.15004 5.20574 5.27416 5.37476 5.43318 5.47990 5.54688 5.59161 5.68059 5.75677 5.99679 6.04033 6.10173 6.24021 6.33193 6.37259 6.46766 6.64097 6.77575 6.78064 6.84229 6.95880 7.00138 7.08600 7.30626 7.49868 7.76441 7.81983 7.86242 8.52504 9.28823 9.92705 10.50139 11.35855 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002634 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.697909 B =10628.100496 C =11437.972173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.120 3.880 3 O -0.150 6.150 4 C 0.033 3.967 5 C 0.292 3.708 6 N -0.379 5.379 7 C -0.101 4.101 8 C -0.193 4.193 9 C 0.391 3.609 10 O -0.505 6.505 11 N -0.510 5.510 12 C 0.051 3.949 13 C -0.068 4.068 14 C -0.126 4.126 15 C 0.170 3.830 16 N -0.593 5.593 17 C -0.248 4.248 18 H 0.064 0.936 19 C 0.000 4.000 20 N -0.903 5.903 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.147 3.853 26 C -0.127 4.127 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.169 0.831 31 H 0.395 0.605 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.013 0.987 39 H 0.252 0.748 40 H 0.014 0.986 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.286 7.098 -11.477 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 O -0.043 6.043 4 C -0.018 4.018 5 C -0.023 4.023 6 N -0.057 5.057 7 C -0.124 4.124 8 C -0.196 4.196 9 C 0.165 3.835 10 O -0.300 6.300 11 N -0.245 5.245 12 C -0.077 4.077 13 C -0.087 4.087 14 C -0.165 4.165 15 C 0.044 3.956 16 N -0.316 5.316 17 C -0.378 4.378 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.020 3.980 26 C -0.166 4.166 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.145 0.855 30 H 0.187 0.813 31 H 0.248 0.752 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.031 0.969 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.177 8.442 -11.375 21.502 hybrid contribution 0.025 -0.835 0.099 0.841 sum 16.202 7.607 -11.276 21.155 Atomic orbital electron populations 1.20926 0.82050 1.05975 1.05673 1.23307 0.94563 0.81882 0.93991 1.84035 1.14747 1.34919 1.70641 1.16033 0.79908 0.89545 1.16357 1.23488 0.92037 0.92814 0.93994 1.81366 1.09940 1.05331 1.09026 1.21742 0.97649 0.92402 1.00639 1.18780 0.92284 0.92262 1.16252 1.21066 0.86292 0.84053 0.92089 1.85024 1.20154 1.34965 1.89901 1.72831 1.08215 1.22831 1.20580 1.22117 0.98893 0.87071 0.99630 1.21026 0.97014 0.95976 0.94674 1.22127 0.95273 0.98036 1.01044 1.20781 0.99302 0.84673 0.90812 1.44081 1.03296 1.01349 1.82895 1.19227 0.88193 1.01463 1.28911 0.91802 1.25036 0.98783 0.99027 0.96973 1.70052 1.32515 1.20043 1.32198 0.86254 0.85678 0.77790 0.77252 1.20313 1.21834 1.21590 1.20864 0.89782 0.94392 0.92953 1.22032 0.99106 0.94800 1.00698 0.88069 0.90223 0.85505 0.81326 0.75179 0.93104 0.90284 0.92405 0.93138 0.92543 0.89728 0.96890 0.93801 0.96805 0.92987 0.93478 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 9.81 36.01 0.35 -0.38 16 2 C 0.12 1.03 7.36 -34.92 -0.26 0.78 16 3 O -0.15 -1.29 10.63 5.65 0.06 -1.23 16 4 C 0.03 0.25 7.05 -38.40 -0.27 -0.02 16 5 C 0.29 2.47 15.88 -22.47 -0.36 2.11 16 6 N -0.38 -3.93 18.54 41.84 0.78 -3.15 16 7 C -0.10 -0.60 10.16 -39.00 -0.40 -0.99 16 8 C -0.19 -1.62 6.12 -105.29 -0.64 -2.26 16 9 C 0.39 4.09 7.98 -14.38 -0.11 3.97 16 10 O -0.51 -4.58 12.00 -17.42 -0.21 -4.79 16 11 N -0.51 -6.54 7.36 -59.26 -0.44 -6.98 16 12 C 0.05 0.73 5.73 -4.04 -0.02 0.71 16 13 C -0.07 -1.15 2.35 -90.56 -0.21 -1.37 16 14 C -0.13 -2.40 5.27 -26.60 -0.14 -2.54 16 15 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 16 N -0.59 -15.09 3.00 -172.33 -0.52 -15.61 16 17 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 18 H 0.06 1.75 7.89 -52.49 -0.41 1.33 16 19 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 20 N -0.90 -26.44 11.20 55.49 0.62 -25.81 16 21 Si 0.90 21.80 29.59 -169.99 -5.03 16.78 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 26 C -0.13 -2.23 5.36 -26.62 -0.14 -2.37 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.13 1.19 6.23 -51.93 -0.32 0.87 16 30 H 0.17 0.37 7.46 -52.48 -0.39 -0.02 16 31 H 0.40 1.44 7.64 45.56 0.35 1.79 16 32 H 0.05 0.71 6.74 -51.93 -0.35 0.36 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 37 H 0.08 2.28 6.06 -51.93 -0.31 1.96 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -32.72 362.27 -6.95 -39.67 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.20 Total: -2.05 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.48 Total: -2.29 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.44 Total: -51.55 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.15 Total: -6.02 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.72 -6.95 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331235785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.222 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds