Wall clock time and date at job start Tue Mar 31 2020 11:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33725 * 125.72444 * 2 1 4 4 C 1.34871 * 109.76993 * 180.02562 * 3 2 1 5 5 C 1.43205 * 125.77672 * 180.02562 * 4 3 2 6 6 N 4.69825 * 150.61559 * 359.96663 * 2 1 3 7 7 C 1.36179 * 108.43371 * 359.75879 * 4 3 2 8 8 C 1.36549 * 125.72328 * 180.02562 * 2 1 3 9 9 C 1.47771 * 126.67243 * 359.92897 * 8 2 1 10 10 O 1.35242 * 120.00309 * 180.02562 * 9 8 2 11 11 N 1.30131 * 119.99929 * 0.02562 * 9 8 2 12 12 C 1.46504 * 119.99911 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46954 * 114.99496 * 12 11 9 14 14 C 1.53076 * 109.45095 * 64.79057 * 13 12 11 15 15 C 1.53183 * 109.29478 * 181.24164 * 14 13 12 16 16 N 1.46930 * 108.89468 * 305.57480 * 15 14 13 17 17 C 1.36937 * 120.63259 * 233.51494 * 16 15 14 18 18 H 1.08000 * 119.99761 * 151.83401 * 17 16 15 19 19 C 1.38806 * 120.00219 * 331.83653 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46925 * 118.73328 * 53.53726 * 16 15 14 26 26 C 1.53033 * 109.45824 * 184.99714 * 13 12 11 27 27 H 1.09002 * 109.46839 * 269.96563 * 1 2 3 28 28 H 1.09003 * 109.46778 * 29.95237 * 1 2 3 29 29 H 1.08991 * 109.47222 * 149.95931 * 1 2 3 30 30 H 1.08005 * 126.70837 * 180.22739 * 7 4 3 31 31 H 0.96707 * 113.99682 * 359.97438 * 10 9 8 32 32 H 1.08997 * 109.47204 * 355.00068 * 12 11 9 33 33 H 1.08997 * 109.47276 * 234.99297 * 12 11 9 34 34 H 1.08990 * 109.46253 * 304.97651 * 13 12 11 35 35 H 1.09005 * 109.39190 * 61.36070 * 14 13 12 36 36 H 1.09004 * 109.62337 * 301.25863 * 14 13 12 37 37 H 1.09005 * 109.58619 * 185.72200 * 15 14 13 38 38 H 1.08998 * 109.58733 * 65.43770 * 15 14 13 39 39 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58688 * 66.18006 * 25 16 15 41 41 H 1.08996 * 109.58570 * 186.45714 * 25 16 15 42 42 H 1.09003 * 109.49897 * 58.66711 * 26 13 12 43 43 H 1.09004 * 109.50093 * 298.57181 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2878 1.0856 0.0000 4 6 3.5846 0.7149 -0.0006 5 6 4.7089 1.6018 -0.0002 6 7 5.6008 2.3053 -0.0013 7 6 3.6435 -0.6456 0.0045 8 6 2.3043 -1.1086 -0.0005 9 6 1.8574 -2.5171 0.0003 10 8 2.7692 -3.5159 0.0002 11 7 0.5864 -2.7964 0.0012 12 6 0.1433 -4.1928 0.0015 13 6 -0.5910 -4.4946 1.3094 14 6 -1.8713 -3.6585 1.3798 15 6 -2.5877 -3.9402 2.7042 16 7 -2.8017 -5.3883 2.8308 17 6 -4.0521 -5.8900 3.0758 18 1 -4.3132 -6.8804 2.7332 19 6 -4.9840 -5.1257 3.7644 20 7 -4.5913 -4.0827 4.4649 21 14 -6.7953 -5.5771 3.6971 22 1 -6.9738 -6.7827 2.8485 23 1 -7.2860 -5.8614 5.0695 24 1 -7.5661 -4.4465 3.1200 25 6 -1.6486 -6.2877 2.6899 26 6 -0.9443 -5.9826 1.3641 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3633 0.8905 -0.5131 29 1 -0.3633 -0.8895 -0.5144 30 1 4.5365 -1.2531 0.0089 31 1 3.6868 -3.2107 -0.0008 32 1 1.0091 -4.8488 -0.0887 33 1 -0.5291 -4.3609 -0.8398 34 1 0.0514 -4.2426 2.1531 35 1 -2.5243 -3.9258 0.5489 36 1 -1.6207 -2.5994 1.3199 37 1 -3.5489 -3.4264 2.7162 38 1 -1.9745 -3.5876 3.5335 39 1 -5.2424 -3.5488 4.9464 40 1 -0.9566 -6.1270 3.5166 41 1 -1.9898 -7.3229 2.6951 42 1 -0.0328 -6.5759 1.2915 43 1 -1.6070 -6.2300 0.5348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331235785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:04 Heat of formation + Delta-G solvation = 15.226650 kcal Electronic energy + Delta-G solvation = -25852.460976 eV Core-core repulsion = 22092.661189 eV Total energy + Delta-G solvation = -3759.799786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.97739 -40.03546 -39.12799 -37.86374 -36.12386 -34.94711 -34.12156 -33.11203 -32.14208 -31.41539 -28.96080 -28.17970 -26.04585 -24.04148 -23.67755 -23.12748 -22.32790 -21.60794 -20.72250 -20.60353 -18.66099 -17.72027 -17.58202 -16.91775 -16.79260 -16.27485 -15.88250 -15.37091 -15.27162 -15.20903 -15.09469 -14.72448 -14.68897 -14.58589 -14.09359 -14.03366 -13.95876 -13.75167 -13.63513 -13.47503 -13.22491 -12.96018 -12.83518 -12.61689 -12.52993 -12.29537 -11.89373 -11.83348 -11.67324 -11.45587 -11.17558 -11.05882 -10.53196 -10.31514 -10.11147 -9.38683 -8.63278 -7.83626 -5.29496 -0.14127 0.44343 0.78906 1.47473 1.48974 1.59893 1.80695 1.95826 2.20872 2.53657 2.58899 2.99482 3.29940 3.33400 3.60999 3.70732 3.77349 4.06382 4.14045 4.23955 4.38898 4.57101 4.58020 4.63773 4.70954 4.71383 4.78438 4.84548 4.85334 4.97034 5.03311 5.04894 5.13509 5.28461 5.41594 5.42613 5.44714 5.49921 5.60467 5.71653 5.75996 5.85398 6.13568 6.43243 6.77352 6.98387 7.18839 7.90943 8.43039 9.22471 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002634 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.697909 B =10628.100496 C =11437.972173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.119 3.881 3 O -0.159 6.159 4 C 0.018 3.982 5 C 0.315 3.685 6 N -0.416 5.416 7 C -0.069 4.069 8 C -0.205 4.205 9 C 0.408 3.592 10 O -0.511 6.511 11 N -0.544 5.544 12 C 0.066 3.934 13 C -0.060 4.060 14 C -0.107 4.107 15 C 0.177 3.823 16 N -0.612 5.612 17 C -0.260 4.260 18 H 0.065 0.935 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.293 1.293 24 H -0.289 1.289 25 C 0.140 3.860 26 C -0.115 4.115 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.211 0.789 31 H 0.419 0.581 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.050 0.950 38 H -0.014 1.014 39 H 0.249 0.751 40 H 0.007 0.993 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.758 6.479 -12.987 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 O -0.053 6.053 4 C -0.033 4.033 5 C 0.000 4.000 6 N -0.095 5.095 7 C -0.092 4.092 8 C -0.208 4.208 9 C 0.183 3.817 10 O -0.310 6.310 11 N -0.280 5.280 12 C -0.063 4.063 13 C -0.079 4.079 14 C -0.146 4.146 15 C 0.052 3.948 16 N -0.336 5.336 17 C -0.390 4.390 18 H 0.083 0.917 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.220 1.220 24 H -0.215 1.215 25 C 0.015 3.985 26 C -0.154 4.154 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.228 0.772 31 H 0.277 0.723 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.004 0.996 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.711 7.815 -12.905 23.266 hybrid contribution -0.332 -0.641 0.606 0.943 sum 17.378 7.174 -12.299 22.466 Atomic orbital electron populations 1.20894 0.82099 1.06306 1.05362 1.23440 0.94811 0.82171 0.93372 1.84026 1.15291 1.35057 1.70943 1.16074 0.79300 0.89982 1.17904 1.23474 0.91616 0.92097 0.92821 1.81393 1.11166 1.06306 1.10600 1.22132 0.97921 0.91785 0.97359 1.18784 0.93412 0.91237 1.17344 1.21185 0.86108 0.84833 0.89533 1.84983 1.21820 1.34889 1.89289 1.72855 1.09807 1.21458 1.23831 1.21804 0.98660 0.88493 0.97348 1.20893 0.95752 0.94986 0.96253 1.21879 0.95801 0.99493 0.97461 1.20598 0.97577 0.84018 0.92618 1.44372 1.03887 1.02237 1.83114 1.19554 0.89520 1.01581 1.28391 0.91704 1.25818 1.02818 0.99259 0.96978 1.70208 1.33595 1.21206 1.33253 0.85213 0.80508 0.77742 0.77028 1.19084 1.22001 1.21527 1.21044 0.88718 0.93776 0.94960 1.21889 0.99849 0.95757 0.97944 0.88652 0.88558 0.86551 0.77209 0.72343 0.92477 0.90424 0.93716 0.93610 0.91101 0.93154 0.99557 0.94178 0.97525 0.92890 0.90450 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 9.81 71.24 0.70 -0.68 16 2 C 0.12 1.86 7.36 25.29 0.19 2.04 16 3 O -0.16 -2.47 10.63 -2.70 -0.03 -2.50 16 4 C 0.02 0.23 7.05 23.04 0.16 0.39 16 5 C 0.31 4.79 15.88 88.33 1.40 6.20 16 6 N -0.42 -8.21 18.54 19.00 0.35 -7.86 16 7 C -0.07 -0.56 10.16 22.64 0.23 -0.33 16 8 C -0.20 -2.87 6.12 -20.30 -0.12 -2.99 16 9 C 0.41 7.40 7.98 87.47 0.70 8.10 16 10 O -0.51 -7.34 12.00 -85.25 -1.02 -8.37 16 11 N -0.54 -12.92 7.36 -455.56 -3.35 -16.28 16 12 C 0.07 1.74 5.73 86.38 0.49 2.24 16 13 C -0.06 -1.96 2.35 -10.75 -0.03 -1.99 16 14 C -0.11 -4.10 5.27 30.68 0.16 -3.94 16 15 C 0.18 8.83 5.30 86.36 0.46 9.29 16 16 N -0.61 -31.75 3.00 -699.11 -2.09 -33.84 16 17 C -0.26 -14.66 9.58 84.03 0.81 -13.86 16 18 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 19 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 20 N -0.94 -56.52 11.20 21.65 0.24 -56.28 16 21 Si 0.97 45.49 29.59 68.60 2.03 47.52 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 C 0.14 6.00 6.52 86.36 0.56 6.56 16 26 C -0.11 -3.86 5.36 30.67 0.16 -3.70 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.12 2.10 6.23 -2.39 -0.01 2.08 16 30 H 0.21 -0.20 7.46 -2.91 -0.02 -0.22 16 31 H 0.42 1.09 7.64 -74.05 -0.57 0.52 16 32 H 0.06 1.43 6.74 -2.39 -0.02 1.41 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.07 2.48 7.72 -2.38 -0.02 2.46 16 37 H 0.05 2.83 6.06 -2.38 -0.01 2.81 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -72.69 362.27 2.90 -69.79 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 0.48 Total: 3.13 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.29 Total: 4.68 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -4.85 Total: -114.25 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -1.05 Total: -10.86 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.69 2.90 -69.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331235785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.021 kcal (2) G-P(sol) polarization free energy of solvation -72.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds