Wall clock time and date at job start Tue Mar 31 2020 11:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.01813 * 2 1 4 4 O 1.42905 * 109.47145 * 301.39099 * 3 2 1 5 5 C 1.54264 * 110.03294 * 238.55590 * 2 1 3 6 6 C 1.54889 * 104.19984 * 264.32743 * 5 2 1 7 7 C 1.54890 * 102.74437 * 322.05792 * 6 5 2 8 8 C 1.53874 * 110.03180 * 121.39148 * 2 1 3 9 9 H 1.08999 * 110.03055 * 359.94982 * 8 2 1 10 10 N 1.46503 * 110.03278 * 238.57063 * 8 2 1 11 11 S 1.65592 * 120.00291 * 145.00056 * 10 8 2 12 12 O 1.42102 * 104.28095 * 181.06802 * 11 10 8 13 13 O 1.42104 * 104.27704 * 308.92686 * 11 10 8 14 14 C 1.81401 * 104.44875 * 64.99709 * 11 10 8 15 15 C 1.53008 * 109.47007 * 173.56496 * 14 11 10 16 16 C 1.50705 * 115.54746 * 65.18816 * 15 14 11 17 17 H 1.07996 * 119.99752 * 264.78312 * 16 15 14 18 18 C 1.37871 * 119.99793 * 84.78752 * 16 15 14 19 19 N 1.31517 * 120.00217 * 352.24566 * 18 16 15 20 20 Si 1.86797 * 119.99869 * 172.24493 * 18 16 15 21 21 H 1.48501 * 109.47378 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47387 * 120.00130 * 20 18 16 23 23 H 1.48509 * 109.47431 * 239.99719 * 20 18 16 24 24 C 1.52999 * 117.49883 * 279.52065 * 15 14 11 25 25 C 1.53001 * 117.49975 * 210.85769 * 15 14 11 26 26 H 1.09002 * 109.47051 * 298.61131 * 1 2 3 27 27 H 1.09007 * 109.46970 * 58.61093 * 1 2 3 28 28 H 1.08998 * 109.46886 * 178.60682 * 1 2 3 29 29 H 1.09004 * 109.47063 * 61.39119 * 3 2 1 30 30 H 1.09005 * 109.46943 * 181.39226 * 3 2 1 31 31 H 0.96700 * 113.99863 * 180.02562 * 4 3 2 32 32 H 1.08999 * 110.48607 * 23.00678 * 5 2 1 33 33 H 1.09005 * 110.48957 * 145.64321 * 5 2 1 34 34 H 1.08997 * 110.75513 * 80.36616 * 6 5 2 35 35 H 1.08994 * 110.75575 * 203.55965 * 6 5 2 36 36 H 1.09003 * 110.48447 * 279.26273 * 7 6 5 37 37 H 1.08996 * 110.48700 * 156.62148 * 7 6 5 38 38 H 0.96999 * 119.99648 * 324.99641 * 10 8 2 39 39 H 1.08998 * 109.47051 * 293.56222 * 14 11 10 40 40 H 1.09001 * 109.47168 * 53.56518 * 14 11 10 41 41 H 0.97002 * 119.99808 * 185.02169 * 19 18 16 42 42 H 1.09004 * 117.49921 * 359.97438 * 24 15 14 43 43 H 1.09002 * 117.50049 * 145.02257 * 24 15 14 44 44 H 1.08994 * 117.49905 * 214.98308 * 25 15 14 45 45 H 1.09000 * 117.49804 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 8 1.5574 2.1254 -1.1501 5 6 2.0584 -0.7561 -1.2365 6 6 2.3280 -2.1905 -0.7182 7 6 2.8874 -1.9403 0.7044 8 6 2.0571 -0.7530 1.2340 9 1 1.2229 -1.1177 1.8334 10 7 2.9033 0.1320 2.0384 11 16 2.9031 0.0025 3.6893 12 8 3.8023 1.0148 4.1204 13 8 1.5277 0.0448 4.0439 14 6 3.5938 -1.6431 4.0143 15 6 3.7959 -1.8231 5.5202 16 6 2.5367 -1.8339 6.3482 17 1 2.1914 -0.9247 6.8177 18 6 1.8257 -3.0045 6.5062 19 7 2.1567 -4.0734 5.8152 20 14 0.3922 -3.0724 7.7020 21 1 0.2260 -1.7473 8.3514 22 1 -0.8495 -3.4231 6.9668 23 1 0.6606 -4.1011 8.7389 24 6 5.0465 -1.2010 6.1445 25 6 4.9489 -2.7194 5.9762 26 1 -0.3633 0.4921 0.9022 27 1 -0.3633 0.5353 -0.8773 28 1 -0.3633 -1.0274 -0.0250 29 1 1.7158 1.9474 0.9022 30 1 3.1435 1.4272 -0.0250 31 1 1.8504 3.0446 -1.2155 32 1 1.3061 -0.7705 -2.0251 33 1 2.9811 -0.3008 -1.5966 34 1 1.4031 -2.7654 -0.6739 35 1 3.0651 -2.6948 -1.3430 36 1 3.9440 -1.6764 0.6578 37 1 2.7401 -2.8191 1.3322 38 1 3.4637 0.7938 1.6039 39 1 2.9065 -2.4048 3.6463 40 1 4.5523 -1.7419 3.5047 41 1 1.6131 -4.8748 5.8713 42 1 5.7257 -0.6639 5.4824 43 1 4.9588 -0.8001 7.1543 44 1 4.7969 -3.3167 6.8752 45 1 5.5633 -3.1812 5.2033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331829105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:11 Heat of formation + Delta-G solvation = -109.160462 kcal Electronic energy + Delta-G solvation = -26663.345382 eV Core-core repulsion = 23001.302966 eV Total energy + Delta-G solvation = -3662.042416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.77767 -36.76581 -36.38587 -36.16944 -35.09431 -33.41672 -32.05295 -31.47638 -28.21299 -27.36655 -26.39583 -25.46073 -24.07749 -21.22798 -20.84931 -19.73464 -18.96375 -18.79550 -17.59953 -16.79374 -16.41612 -16.10718 -15.15196 -15.06502 -14.97520 -14.68257 -14.47949 -14.20552 -13.81302 -13.55016 -13.14869 -12.74944 -12.55823 -12.39476 -12.01818 -11.92596 -11.82666 -11.68453 -11.29508 -11.20401 -11.07419 -10.99535 -10.94190 -10.86246 -10.64518 -10.60446 -10.57246 -10.47579 -10.44640 -10.11960 -10.00459 -9.72432 -9.17521 -8.96162 -8.58144 -8.10448 -6.15310 -4.25528 1.07130 3.27669 3.35718 3.40529 3.43014 4.05396 4.36487 4.45074 4.49091 4.56742 4.84250 5.02676 5.10561 5.13744 5.19426 5.25186 5.28980 5.37034 5.41240 5.49286 5.55030 5.62773 5.67700 5.81653 5.90540 5.92803 5.97123 6.03718 6.08901 6.19014 6.24824 6.28906 6.35921 6.37270 6.47113 6.60448 6.70917 6.97363 7.19254 7.26343 7.37934 7.50368 7.79564 8.19398 8.80227 9.45719 10.92377 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.004724 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.562541 B = 5925.612660 C = 6230.532183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C 0.087 3.913 4 O -0.571 6.571 5 C -0.105 4.105 6 C -0.124 4.124 7 C -0.148 4.148 8 C 0.154 3.846 9 H 0.104 0.896 10 N -1.130 6.130 11 S 2.603 3.397 12 O -0.976 6.976 13 O -0.950 6.950 14 C -0.551 4.551 15 C 0.043 3.957 16 C -0.515 4.515 17 H 0.068 0.932 18 C 0.082 3.918 19 N -0.874 5.874 20 Si 0.891 3.109 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.282 1.282 24 C -0.209 4.209 25 C -0.141 4.141 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.376 0.624 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.407 0.593 39 H 0.134 0.866 40 H 0.099 0.901 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 5.267 -14.617 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 C 0.009 3.991 4 O -0.376 6.376 5 C -0.143 4.143 6 C -0.162 4.162 7 C -0.187 4.187 8 C 0.046 3.954 9 H 0.121 0.879 10 N -0.887 5.887 11 S 2.700 3.300 12 O -0.967 6.967 13 O -0.939 6.939 14 C -0.684 4.684 15 C 0.040 3.960 16 C -0.552 4.552 17 H 0.086 0.914 18 C -0.123 4.123 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.208 1.208 24 C -0.246 4.246 25 C -0.180 4.180 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.222 0.778 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.242 0.758 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.964 5.043 -14.021 14.932 hybrid contribution 0.118 -0.053 0.264 0.294 sum 1.082 4.990 -13.757 14.674 Atomic orbital electron populations 1.21847 0.93112 1.02001 1.02550 1.21348 0.96987 0.93358 0.94942 1.22248 0.96502 0.92552 0.87835 1.86452 1.76192 1.28690 1.46234 1.22370 1.00871 0.94703 0.96370 1.22474 1.01105 0.96804 0.95851 1.23023 1.00282 0.98494 0.96950 1.21564 0.92824 0.89055 0.91928 0.87851 1.56245 1.56976 1.48271 1.27162 1.05247 0.75285 0.77868 0.71590 1.93501 1.67302 1.56166 1.79712 1.93539 1.32750 1.86972 1.80675 1.29998 1.10490 1.20953 1.07007 1.18300 0.89972 1.01172 0.86535 1.20559 1.07207 0.95896 1.31538 0.91351 1.24942 0.96959 0.95133 0.95237 1.69985 1.38113 1.03044 1.39829 0.86530 0.82051 0.78437 0.81145 1.19236 1.20615 1.20842 1.23197 1.02852 0.96539 1.02000 1.22546 1.02138 0.91162 1.02148 0.92163 0.91727 0.92311 0.92863 0.93648 0.77766 0.91255 0.91598 0.91147 0.91366 0.90578 0.90194 0.75808 0.84796 0.88278 0.92787 0.90726 0.89549 0.89606 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.00 37.16 0.30 -1.36 16 2 C -0.06 -0.76 0.75 -153.39 -0.12 -0.88 16 3 C 0.09 0.96 4.52 37.16 0.17 1.13 16 4 O -0.57 -5.82 12.68 -35.23 -0.45 -6.26 16 5 C -0.11 -1.09 5.66 -25.07 -0.14 -1.23 16 6 C -0.12 -1.26 6.91 -24.74 -0.17 -1.43 16 7 C -0.15 -1.76 6.52 -25.07 -0.16 -1.93 16 8 C 0.15 2.09 3.11 -66.81 -0.21 1.88 16 9 H 0.10 1.58 7.05 -51.93 -0.37 1.21 16 10 N -1.13 -16.43 4.56 -3.94 -0.02 -16.45 16 11 S 2.60 51.62 5.17 -107.50 -0.56 51.06 16 12 O -0.98 -21.16 18.08 -57.54 -1.04 -22.20 16 13 O -0.95 -22.29 17.10 -57.54 -0.98 -23.27 16 14 C -0.55 -11.28 5.92 37.16 0.22 -11.06 16 15 C 0.04 1.02 1.32 -155.65 -0.21 0.82 16 16 C -0.51 -13.97 8.19 -34.44 -0.28 -14.25 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 19 N -0.87 -23.69 12.98 55.43 0.72 -22.97 16 20 Si 0.89 21.29 29.55 -169.99 -5.02 16.26 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16 25 C -0.14 -3.17 9.49 -26.69 -0.25 -3.43 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.75 7.64 -51.92 -0.40 0.35 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.64 7.80 -51.93 -0.41 0.23 16 30 H 0.05 0.44 6.84 -51.93 -0.36 0.09 16 31 H 0.38 2.25 9.12 45.56 0.42 2.66 16 32 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 33 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.08 1.01 7.98 -51.93 -0.41 0.60 16 38 H 0.41 4.97 6.38 -34.46 -0.22 4.75 16 39 H 0.13 2.83 7.98 -51.93 -0.41 2.41 16 40 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16 41 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 44 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -32.79 371.05 -9.71 -42.50 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.74 Total: 10.16 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: -1.22 Total: -34.43 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.70 Total: -39.41 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -2.47 Total: -51.73 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 51.62 SS G_CDS: -0.56 Total: 51.06 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.79 -9.71 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331829105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.665 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds