Wall clock time and date at job start Tue Mar 31 2020 11:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.01813 * 2 1 4 4 O 1.42905 * 109.47145 * 301.39099 * 3 2 1 5 5 C 1.54264 * 110.03294 * 238.55590 * 2 1 3 6 6 C 1.54889 * 104.19984 * 264.32743 * 5 2 1 7 7 C 1.54890 * 102.74437 * 322.05792 * 6 5 2 8 8 C 1.53874 * 110.03180 * 121.39148 * 2 1 3 9 9 H 1.08999 * 110.03055 * 359.94982 * 8 2 1 10 10 N 1.46503 * 110.03278 * 238.57063 * 8 2 1 11 11 S 1.65592 * 120.00291 * 145.00056 * 10 8 2 12 12 O 1.42102 * 104.28095 * 181.06802 * 11 10 8 13 13 O 1.42104 * 104.27704 * 308.92686 * 11 10 8 14 14 C 1.81401 * 104.44875 * 64.99709 * 11 10 8 15 15 C 1.53008 * 109.47007 * 173.56496 * 14 11 10 16 16 C 1.50705 * 115.54746 * 65.18816 * 15 14 11 17 17 H 1.07996 * 119.99752 * 264.78312 * 16 15 14 18 18 C 1.37871 * 119.99793 * 84.78752 * 16 15 14 19 19 N 1.31517 * 120.00217 * 352.24566 * 18 16 15 20 20 Si 1.86797 * 119.99869 * 172.24493 * 18 16 15 21 21 H 1.48501 * 109.47378 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47387 * 120.00130 * 20 18 16 23 23 H 1.48509 * 109.47431 * 239.99719 * 20 18 16 24 24 C 1.52999 * 117.49883 * 279.52065 * 15 14 11 25 25 C 1.53001 * 117.49975 * 210.85769 * 15 14 11 26 26 H 1.09002 * 109.47051 * 298.61131 * 1 2 3 27 27 H 1.09007 * 109.46970 * 58.61093 * 1 2 3 28 28 H 1.08998 * 109.46886 * 178.60682 * 1 2 3 29 29 H 1.09004 * 109.47063 * 61.39119 * 3 2 1 30 30 H 1.09005 * 109.46943 * 181.39226 * 3 2 1 31 31 H 0.96700 * 113.99863 * 180.02562 * 4 3 2 32 32 H 1.08999 * 110.48607 * 23.00678 * 5 2 1 33 33 H 1.09005 * 110.48957 * 145.64321 * 5 2 1 34 34 H 1.08997 * 110.75513 * 80.36616 * 6 5 2 35 35 H 1.08994 * 110.75575 * 203.55965 * 6 5 2 36 36 H 1.09003 * 110.48447 * 279.26273 * 7 6 5 37 37 H 1.08996 * 110.48700 * 156.62148 * 7 6 5 38 38 H 0.96999 * 119.99648 * 324.99641 * 10 8 2 39 39 H 1.08998 * 109.47051 * 293.56222 * 14 11 10 40 40 H 1.09001 * 109.47168 * 53.56518 * 14 11 10 41 41 H 0.97002 * 119.99808 * 185.02169 * 19 18 16 42 42 H 1.09004 * 117.49921 * 359.97438 * 24 15 14 43 43 H 1.09002 * 117.50049 * 145.02257 * 24 15 14 44 44 H 1.08994 * 117.49905 * 214.98308 * 25 15 14 45 45 H 1.09000 * 117.49804 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 8 1.5574 2.1254 -1.1501 5 6 2.0584 -0.7561 -1.2365 6 6 2.3280 -2.1905 -0.7182 7 6 2.8874 -1.9403 0.7044 8 6 2.0571 -0.7530 1.2340 9 1 1.2229 -1.1177 1.8334 10 7 2.9033 0.1320 2.0384 11 16 2.9031 0.0025 3.6893 12 8 3.8023 1.0148 4.1204 13 8 1.5277 0.0448 4.0439 14 6 3.5938 -1.6431 4.0143 15 6 3.7959 -1.8231 5.5202 16 6 2.5367 -1.8339 6.3482 17 1 2.1914 -0.9247 6.8177 18 6 1.8257 -3.0045 6.5062 19 7 2.1567 -4.0734 5.8152 20 14 0.3922 -3.0724 7.7020 21 1 0.2260 -1.7473 8.3514 22 1 -0.8495 -3.4231 6.9668 23 1 0.6606 -4.1011 8.7389 24 6 5.0465 -1.2010 6.1445 25 6 4.9489 -2.7194 5.9762 26 1 -0.3633 0.4921 0.9022 27 1 -0.3633 0.5353 -0.8773 28 1 -0.3633 -1.0274 -0.0250 29 1 1.7158 1.9474 0.9022 30 1 3.1435 1.4272 -0.0250 31 1 1.8504 3.0446 -1.2155 32 1 1.3061 -0.7705 -2.0251 33 1 2.9811 -0.3008 -1.5966 34 1 1.4031 -2.7654 -0.6739 35 1 3.0651 -2.6948 -1.3430 36 1 3.9440 -1.6764 0.6578 37 1 2.7401 -2.8191 1.3322 38 1 3.4637 0.7938 1.6039 39 1 2.9065 -2.4048 3.6463 40 1 4.5523 -1.7419 3.5047 41 1 1.6131 -4.8748 5.8713 42 1 5.7257 -0.6639 5.4824 43 1 4.9588 -0.8001 7.1543 44 1 4.7969 -3.3167 6.8752 45 1 5.5633 -3.1812 5.2033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331829105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:11 Heat of formation + Delta-G solvation = -133.348615 kcal Electronic energy + Delta-G solvation = -26664.394259 eV Core-core repulsion = 23001.302966 eV Total energy + Delta-G solvation = -3663.091293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.72976 -38.56434 -37.94565 -37.12444 -36.79711 -34.55937 -34.08460 -32.37586 -29.85524 -28.35693 -27.53408 -27.29934 -25.00240 -22.99018 -21.84970 -21.38785 -20.33841 -19.99300 -18.74852 -18.32602 -17.97839 -17.24364 -16.77259 -16.68655 -16.26680 -16.01745 -15.67384 -15.48177 -15.22587 -14.90293 -14.46484 -13.83304 -13.72173 -13.68775 -13.51190 -13.35698 -13.13939 -13.02556 -12.90913 -12.87369 -12.85761 -12.79174 -12.45058 -12.21417 -11.97852 -11.94099 -11.82933 -11.66761 -11.53345 -11.43401 -11.30694 -10.87577 -10.83045 -10.55628 -10.40796 -9.86736 -8.19809 -6.33827 -0.50968 1.35740 1.39551 1.50199 2.00462 2.39088 2.92732 3.07428 3.19911 3.38239 3.42807 3.59566 3.63460 3.94057 4.04399 4.21198 4.27783 4.32616 4.37330 4.44347 4.48832 4.52929 4.58896 4.62066 4.67515 4.73106 4.80338 4.85184 4.97992 5.00083 5.08280 5.13802 5.21776 5.25176 5.25444 5.39054 5.45534 5.49700 5.51986 5.59264 5.71904 6.12529 6.22809 6.72006 6.91884 7.38329 8.87275 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.004724 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.562541 B = 5925.612660 C = 6230.532183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C 0.086 3.914 4 O -0.579 6.579 5 C -0.098 4.098 6 C -0.119 4.119 7 C -0.149 4.149 8 C 0.147 3.853 9 H 0.079 0.921 10 N -1.109 6.109 11 S 2.618 3.382 12 O -0.996 6.996 13 O -0.994 6.994 14 C -0.547 4.547 15 C 0.009 3.991 16 C -0.533 4.533 17 H 0.046 0.954 18 C 0.045 3.955 19 N -0.890 5.890 20 Si 0.933 3.067 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.271 1.271 24 C -0.198 4.198 25 C -0.136 4.136 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.395 0.605 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.421 0.579 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.265 0.735 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 5.217 -16.607 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C 0.008 3.992 4 O -0.387 6.387 5 C -0.135 4.135 6 C -0.157 4.157 7 C -0.188 4.188 8 C 0.039 3.961 9 H 0.097 0.903 10 N -0.871 5.871 11 S 2.716 3.284 12 O -0.987 6.987 13 O -0.984 6.984 14 C -0.680 4.680 15 C 0.007 3.993 16 C -0.571 4.571 17 H 0.064 0.936 18 C -0.158 4.158 19 N -0.526 5.526 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.235 4.235 25 C -0.176 4.176 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.244 0.756 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.260 0.740 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.127 5.012 -16.008 16.909 hybrid contribution -0.250 0.017 0.851 0.887 sum 1.877 5.029 -15.157 16.080 Atomic orbital electron populations 1.21840 0.93697 1.02150 1.01780 1.21373 0.96580 0.94137 0.94771 1.22181 0.97455 0.91956 0.87656 1.86405 1.76494 1.30262 1.45491 1.22327 1.01364 0.94394 0.95446 1.22474 1.01566 0.96931 0.94739 1.23031 1.00858 0.97046 0.97854 1.21726 0.92408 0.89877 0.92060 0.90306 1.55696 1.57310 1.48886 1.25186 1.04476 0.74022 0.77290 0.72627 1.93461 1.67429 1.56788 1.80979 1.93485 1.35209 1.87419 1.82256 1.29870 1.12225 1.20887 1.04989 1.18435 0.89439 1.03225 0.88192 1.20706 1.08875 0.95200 1.32304 0.93586 1.25470 0.98835 0.95094 0.96416 1.70017 1.38843 1.03231 1.40474 0.85891 0.80121 0.78224 0.79936 1.19919 1.20173 1.19638 1.23248 1.01845 0.96302 1.02102 1.22503 1.01735 0.91419 1.01896 0.94144 0.91112 0.91853 0.94445 0.91834 0.75604 0.90737 0.90548 0.91192 0.89473 0.89130 0.91302 0.74035 0.85733 0.84718 0.92525 0.88251 0.90081 0.91628 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.00 71.98 0.58 -2.67 16 2 C -0.07 -1.48 0.75 -51.46 -0.04 -1.52 16 3 C 0.09 1.74 4.52 71.98 0.33 2.06 16 4 O -0.58 -10.47 12.68 -148.98 -1.89 -12.36 16 5 C -0.10 -1.73 5.66 31.67 0.18 -1.55 16 6 C -0.12 -2.09 6.91 31.89 0.22 -1.87 16 7 C -0.15 -3.24 6.52 31.67 0.21 -3.03 16 8 C 0.15 3.84 3.11 45.71 0.14 3.98 16 9 H 0.08 2.47 7.05 -2.39 -0.02 2.45 16 10 N -1.11 -30.98 4.56 -166.37 -0.76 -31.74 16 11 S 2.62 103.39 5.17 -56.49 -0.29 103.09 16 12 O -1.00 -42.45 18.08 -127.65 -2.31 -44.76 16 13 O -0.99 -48.02 17.10 -127.65 -2.18 -50.20 16 14 C -0.55 -21.88 5.92 71.98 0.43 -21.46 16 15 C 0.01 0.44 1.32 -52.92 -0.07 0.37 16 16 C -0.53 -29.48 8.19 25.60 0.21 -29.27 16 17 H 0.05 2.67 7.83 -2.91 -0.02 2.65 16 18 C 0.04 2.45 5.38 84.65 0.46 2.91 16 19 N -0.89 -48.37 12.98 21.45 0.28 -48.09 16 20 Si 0.93 44.02 29.55 68.60 2.03 46.05 16 21 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 C -0.20 -8.41 9.96 30.62 0.30 -8.10 16 25 C -0.14 -6.01 9.49 30.62 0.29 -5.72 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.56 7.64 -2.38 -0.02 1.55 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 29 H 0.04 0.87 7.80 -2.38 -0.02 0.85 16 30 H 0.06 1.04 6.84 -2.38 -0.02 1.03 16 31 H 0.39 3.77 9.12 -74.06 -0.68 3.09 16 32 H 0.07 1.28 7.84 -2.39 -0.02 1.26 16 33 H 0.08 1.23 7.84 -2.38 -0.02 1.21 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.71 8.05 -2.39 -0.02 1.69 16 37 H 0.07 1.66 7.98 -2.39 -0.02 1.64 16 38 H 0.42 9.43 6.38 -96.75 -0.62 8.81 16 39 H 0.12 5.24 7.98 -2.39 -0.02 5.23 16 40 H 0.13 4.29 8.09 -2.39 -0.02 4.27 16 41 H 0.27 13.69 8.32 -92.71 -0.77 12.92 16 42 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 43 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 44 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -70.41 371.05 -2.20 -72.61 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.31 Total: 31.26 kcal Atomic # 6 Polarization: -69.09 SS G_CDS: 3.23 Total: -65.86 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -0.48 Total: -79.83 kcal Atomic # 8 Polarization: -100.94 SS G_CDS: -6.38 Total: -107.32 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 103.39 SS G_CDS: -0.29 Total: 103.09 kcal Total: -70.41 -2.20 -72.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331829105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.740 kcal (2) G-P(sol) polarization free energy of solvation -70.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds