Wall clock time and date at job start Tue Mar 31 2020 11:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47350 * 2 1 4 4 S 1.81400 * 109.47300 * 59.99984 * 3 2 1 5 5 O 1.42100 * 110.54300 * 68.37360 * 4 3 2 6 6 O 1.42104 * 110.54004 * 291.62829 * 4 3 2 7 7 N 1.65599 * 104.45299 * 180.02562 * 4 3 2 8 8 C 1.47581 * 134.49321 * 89.99967 * 7 4 3 9 9 C 1.53945 * 86.11895 * 155.35965 * 8 7 4 10 10 O 1.42904 * 113.73986 * 269.15696 * 9 8 7 11 11 C 1.50694 * 113.74220 * 137.95139 * 9 8 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.47582 * 134.49014 * 269.99691 * 7 4 3 20 20 C 1.53006 * 109.47328 * 119.99939 * 2 1 3 21 21 C 1.52998 * 109.46945 * 60.00121 * 20 2 1 22 22 C 1.52996 * 109.47122 * 59.99829 * 21 20 2 23 23 C 1.52994 * 109.47631 * 299.99815 * 22 21 20 24 24 C 1.53003 * 109.47178 * 240.00096 * 2 1 3 25 25 H 1.09003 * 109.47007 * 59.99783 * 1 2 3 26 26 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47466 * 300.00287 * 1 2 3 28 28 H 1.09003 * 109.47243 * 300.00072 * 3 2 1 29 29 H 1.09002 * 109.47517 * 179.97438 * 3 2 1 30 30 H 1.09001 * 113.77016 * 41.05457 * 8 7 4 31 31 H 1.09003 * 113.76752 * 269.65783 * 8 7 4 32 32 H 0.96699 * 113.99284 * 178.07513 * 10 9 8 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.09002 * 113.76615 * 90.34196 * 19 7 4 35 35 H 1.08991 * 113.77327 * 318.94063 * 19 7 4 36 36 H 1.08996 * 109.47282 * 179.97438 * 20 2 1 37 37 H 1.08999 * 109.46663 * 300.00267 * 20 2 1 38 38 H 1.09010 * 109.46854 * 300.00139 * 21 20 2 39 39 H 1.08999 * 109.47212 * 180.02562 * 21 20 2 40 40 H 1.09010 * 109.47037 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47133 * 60.00264 * 22 21 20 42 42 H 1.08996 * 109.47229 * 300.00390 * 23 22 21 43 43 H 1.09004 * 109.47329 * 179.97438 * 23 22 21 44 44 H 1.08991 * 109.47447 * 59.99999 * 24 2 1 45 45 H 1.09002 * 109.46929 * 179.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 1.4354 2.2976 1.4811 5 8 2.0479 1.7669 2.6483 6 8 0.0279 2.4811 1.4113 7 7 2.0530 3.8290 1.3553 8 6 1.5790 5.0889 0.7504 9 6 2.5010 5.7979 1.7590 10 8 1.8594 6.1258 2.9931 11 6 3.2690 6.9534 1.1708 12 1 3.1416 7.2126 0.1302 13 6 4.1343 7.6797 1.9613 14 7 4.2891 7.3643 3.2286 15 14 5.0868 9.1116 1.2319 16 1 6.3821 8.6224 0.6953 17 1 4.2960 9.7244 0.1345 18 1 5.3394 10.1263 2.2864 19 6 3.2986 4.4818 1.8030 20 6 2.0400 -0.7213 1.2493 21 6 1.5300 -2.1637 1.2493 22 6 2.0400 -2.8849 0.0000 23 6 1.5300 -2.1638 -1.2492 24 6 2.0399 -0.7212 -1.2493 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 0.5187 5.2826 0.9128 31 1 1.8822 5.2188 -0.2885 32 1 2.4429 6.5449 3.6404 33 1 4.8981 7.8751 3.7846 34 1 4.1068 4.4333 1.0732 35 1 3.6112 4.1909 2.8058 36 1 3.1300 -0.7216 1.2490 37 1 1.6766 -0.2074 2.1392 38 1 0.4399 -2.1637 1.2492 39 1 1.8930 -2.6775 2.1394 40 1 1.6770 -3.9128 0.0002 41 1 3.1299 -2.8849 0.0000 42 1 0.4400 -2.1638 -1.2492 43 1 1.8937 -2.6774 -2.1392 44 1 1.6767 -0.2075 -2.1392 45 1 3.1300 -0.7208 -1.2495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332419485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:40 Heat of formation + Delta-G solvation = -106.730277 kcal Electronic energy + Delta-G solvation = -26272.038535 eV Core-core repulsion = 22610.101500 eV Total energy + Delta-G solvation = -3661.937035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.70527 -38.44130 -36.64321 -35.50634 -33.88828 -33.54578 -32.14225 -30.98011 -28.04724 -27.46555 -26.71955 -25.27811 -24.58919 -22.88489 -21.49276 -19.59374 -18.65064 -18.12427 -17.53107 -16.83415 -16.03234 -15.80876 -15.51295 -15.11550 -14.76899 -14.71997 -14.21214 -14.03471 -13.71883 -13.38032 -13.14631 -13.06554 -12.85745 -12.54413 -12.21063 -12.11230 -12.02017 -11.79269 -11.59542 -11.57131 -11.46035 -11.44188 -11.15543 -11.11611 -11.10464 -10.78625 -10.72377 -10.50740 -10.37654 -10.26397 -10.22813 -9.86942 -9.28620 -8.73964 -8.53603 -8.01075 -6.34369 -4.45233 0.65967 3.11710 3.16011 3.24683 3.27605 4.13854 4.20371 4.29819 4.42844 4.48398 4.56820 4.83928 4.91095 4.97173 5.02865 5.12128 5.20695 5.26111 5.35355 5.40753 5.46146 5.52402 5.60645 5.72157 5.79653 5.86182 5.88789 5.99267 5.99487 6.02609 6.05334 6.09008 6.14651 6.22994 6.32402 6.37041 6.41170 6.69743 6.80829 7.02806 7.52970 7.68909 7.88127 8.57477 9.25403 9.55187 10.71836 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.003395 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.769576 B = 8244.400664 C = 8456.262025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.042 4.042 3 C -0.634 4.634 4 S 2.619 3.381 5 O -0.957 6.957 6 O -0.960 6.960 7 N -1.029 6.029 8 C 0.127 3.873 9 C 0.246 3.754 10 O -0.572 6.572 11 C -0.537 4.537 12 H 0.071 0.929 13 C 0.071 3.929 14 N -0.896 5.896 15 Si 0.908 3.092 16 H -0.278 1.278 17 H -0.271 1.271 18 H -0.284 1.284 19 C 0.101 3.899 20 C -0.142 4.142 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.100 4.100 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.392 0.608 33 H 0.273 0.727 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 -15.531 -8.202 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.043 4.043 3 C -0.762 4.762 4 S 2.715 3.285 5 O -0.948 6.948 6 O -0.950 6.950 7 N -0.869 5.869 8 C 0.002 3.998 9 C 0.202 3.798 10 O -0.385 6.385 11 C -0.576 4.576 12 H 0.089 0.911 13 C -0.132 4.132 14 N -0.537 5.537 15 Si 0.735 3.265 16 H -0.204 1.204 17 H -0.196 1.196 18 H -0.209 1.209 19 C -0.024 4.024 20 C -0.180 4.180 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.138 4.138 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.344 -16.293 -7.608 18.290 hybrid contribution 1.614 0.854 -0.829 2.006 sum -1.730 -15.439 -8.438 17.679 Atomic orbital electron populations 1.22454 0.93645 1.03385 1.04073 1.20203 0.96045 0.90804 0.97292 1.30944 1.12577 1.08204 1.24427 1.04765 0.74542 0.72725 0.76499 1.93538 1.78406 1.78760 1.44054 1.93530 1.29282 1.84605 1.87600 1.60157 1.33570 1.22196 1.70947 1.23075 1.00211 0.79082 0.97412 1.19837 0.87348 0.89534 0.83095 1.86050 1.42434 1.82756 1.27215 1.21581 1.24102 1.14533 0.97414 0.91059 1.25091 0.95942 0.97314 0.94808 1.69337 1.37622 1.40828 1.05882 0.86343 0.79843 0.81412 0.78928 1.20400 1.19593 1.20937 1.23863 0.86125 0.93684 0.98774 1.22097 1.02039 0.96658 0.97197 1.21554 1.01146 0.95028 0.97947 1.21554 1.00864 0.98656 0.94695 1.21611 1.01203 0.95419 0.97795 1.21540 1.00706 0.95164 0.96421 0.91551 0.90824 0.90834 0.85405 0.85418 0.90716 0.90018 0.75200 0.91635 0.90565 0.91003 0.90787 0.90078 0.91451 0.91581 0.92095 0.91971 0.91479 0.92025 0.91698 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 7.30 37.15 0.27 -1.91 16 2 C -0.04 -0.51 0.54 -154.51 -0.08 -0.59 16 3 C -0.63 -8.42 5.18 37.15 0.19 -8.22 16 4 S 2.62 47.84 4.97 -107.50 -0.53 47.30 16 5 O -0.96 -19.83 15.64 -57.54 -0.90 -20.73 16 6 O -0.96 -19.50 15.64 -57.54 -0.90 -20.40 16 7 N -1.03 -20.83 3.99 -118.69 -0.47 -21.30 16 8 C 0.13 2.63 8.30 -2.97 -0.02 2.61 16 9 C 0.25 5.94 1.44 -90.84 -0.13 5.81 16 10 O -0.57 -15.13 13.48 -35.23 -0.48 -15.60 16 11 C -0.54 -13.38 8.62 -34.44 -0.30 -13.67 16 12 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 14 N -0.90 -23.00 11.09 55.43 0.61 -22.39 16 15 Si 0.91 19.36 29.54 -169.99 -5.02 14.34 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 C 0.10 2.22 8.31 -2.97 -0.02 2.20 16 20 C -0.14 -1.80 4.26 -26.73 -0.11 -1.91 16 21 C -0.12 -1.21 5.65 -26.73 -0.15 -1.36 16 22 C -0.12 -1.03 5.92 -26.74 -0.16 -1.19 16 23 C -0.12 -1.05 5.65 -26.73 -0.15 -1.20 16 24 C -0.10 -0.99 4.73 -26.73 -0.13 -1.11 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.75 4.81 -51.93 -0.25 0.50 16 27 H 0.07 1.05 5.46 -51.93 -0.28 0.77 16 28 H 0.13 1.48 8.14 -51.92 -0.42 1.06 16 29 H 0.13 1.53 8.14 -51.92 -0.42 1.11 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 32 H 0.39 10.46 6.46 45.56 0.29 10.76 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 35 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.20 5.46 -51.93 -0.28 0.91 16 38 H 0.07 0.65 6.43 -51.92 -0.33 0.32 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -29.63 352.03 -9.93 -39.56 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.65 Total: 12.80 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -0.89 Total: -18.88 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.14 Total: -43.69 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -2.28 Total: -56.73 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 16 Polarization: 47.84 SS G_CDS: -0.53 Total: 47.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.63 -9.93 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332419485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.172 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds