Wall clock time and date at job start Tue Mar 31 2020 11:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47350 * 2 1 4 4 S 1.81400 * 109.47300 * 59.99984 * 3 2 1 5 5 O 1.42100 * 110.54300 * 68.37360 * 4 3 2 6 6 O 1.42104 * 110.54004 * 291.62829 * 4 3 2 7 7 N 1.65599 * 104.45299 * 180.02562 * 4 3 2 8 8 C 1.47581 * 134.49321 * 89.99967 * 7 4 3 9 9 C 1.53945 * 86.11895 * 155.35965 * 8 7 4 10 10 O 1.42904 * 113.73986 * 269.15696 * 9 8 7 11 11 C 1.50694 * 113.74220 * 137.95139 * 9 8 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.47582 * 134.49014 * 269.99691 * 7 4 3 20 20 C 1.53006 * 109.47328 * 119.99939 * 2 1 3 21 21 C 1.52998 * 109.46945 * 60.00121 * 20 2 1 22 22 C 1.52996 * 109.47122 * 59.99829 * 21 20 2 23 23 C 1.52994 * 109.47631 * 299.99815 * 22 21 20 24 24 C 1.53003 * 109.47178 * 240.00096 * 2 1 3 25 25 H 1.09003 * 109.47007 * 59.99783 * 1 2 3 26 26 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47466 * 300.00287 * 1 2 3 28 28 H 1.09003 * 109.47243 * 300.00072 * 3 2 1 29 29 H 1.09002 * 109.47517 * 179.97438 * 3 2 1 30 30 H 1.09001 * 113.77016 * 41.05457 * 8 7 4 31 31 H 1.09003 * 113.76752 * 269.65783 * 8 7 4 32 32 H 0.96699 * 113.99284 * 178.07513 * 10 9 8 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.09002 * 113.76615 * 90.34196 * 19 7 4 35 35 H 1.08991 * 113.77327 * 318.94063 * 19 7 4 36 36 H 1.08996 * 109.47282 * 179.97438 * 20 2 1 37 37 H 1.08999 * 109.46663 * 300.00267 * 20 2 1 38 38 H 1.09010 * 109.46854 * 300.00139 * 21 20 2 39 39 H 1.08999 * 109.47212 * 180.02562 * 21 20 2 40 40 H 1.09010 * 109.47037 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47133 * 60.00264 * 22 21 20 42 42 H 1.08996 * 109.47229 * 300.00390 * 23 22 21 43 43 H 1.09004 * 109.47329 * 179.97438 * 23 22 21 44 44 H 1.08991 * 109.47447 * 59.99999 * 24 2 1 45 45 H 1.09002 * 109.46929 * 179.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 1.4354 2.2976 1.4811 5 8 2.0479 1.7669 2.6483 6 8 0.0279 2.4811 1.4113 7 7 2.0530 3.8290 1.3553 8 6 1.5790 5.0889 0.7504 9 6 2.5010 5.7979 1.7590 10 8 1.8594 6.1258 2.9931 11 6 3.2690 6.9534 1.1708 12 1 3.1416 7.2126 0.1302 13 6 4.1343 7.6797 1.9613 14 7 4.2891 7.3643 3.2286 15 14 5.0868 9.1116 1.2319 16 1 6.3821 8.6224 0.6953 17 1 4.2960 9.7244 0.1345 18 1 5.3394 10.1263 2.2864 19 6 3.2986 4.4818 1.8030 20 6 2.0400 -0.7213 1.2493 21 6 1.5300 -2.1637 1.2493 22 6 2.0400 -2.8849 0.0000 23 6 1.5300 -2.1638 -1.2492 24 6 2.0399 -0.7212 -1.2493 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 0.5187 5.2826 0.9128 31 1 1.8822 5.2188 -0.2885 32 1 2.4429 6.5449 3.6404 33 1 4.8981 7.8751 3.7846 34 1 4.1068 4.4333 1.0732 35 1 3.6112 4.1909 2.8058 36 1 3.1300 -0.7216 1.2490 37 1 1.6766 -0.2074 2.1392 38 1 0.4399 -2.1637 1.2492 39 1 1.8930 -2.6775 2.1394 40 1 1.6770 -3.9128 0.0002 41 1 3.1299 -2.8849 0.0000 42 1 0.4400 -2.1638 -1.2492 43 1 1.8937 -2.6774 -2.1392 44 1 1.6767 -0.2075 -2.1392 45 1 3.1300 -0.7208 -1.2495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332419485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:40 Heat of formation + Delta-G solvation = -127.818452 kcal Electronic energy + Delta-G solvation = -26272.952987 eV Core-core repulsion = 22610.101500 eV Total energy + Delta-G solvation = -3662.851487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58288 -40.16141 -38.17970 -37.02914 -35.77068 -34.40517 -34.08672 -31.75891 -29.65611 -28.68504 -27.62260 -26.96434 -26.35124 -23.67816 -22.32257 -21.34755 -19.74740 -19.45393 -19.30149 -18.42323 -17.36802 -17.29316 -16.93484 -16.55362 -15.95257 -15.74894 -15.50804 -15.39050 -15.03874 -14.83499 -14.69755 -14.12692 -13.90875 -13.89061 -13.54830 -13.37632 -13.29902 -13.14398 -13.07842 -12.89167 -12.82732 -12.63312 -12.58836 -12.46523 -12.22737 -12.15959 -12.13163 -11.97560 -11.77259 -11.16032 -11.13321 -11.04633 -10.80978 -10.61555 -10.29352 -9.73271 -8.21349 -6.39385 -0.75850 1.48577 1.51529 1.60811 1.63468 2.42698 2.87293 2.96412 3.05893 3.33121 3.51512 3.64974 3.66468 3.98069 4.13565 4.20895 4.28832 4.31299 4.32979 4.36317 4.42593 4.55803 4.58116 4.65767 4.70520 4.72246 4.75718 4.85067 5.01655 5.01732 5.03073 5.08903 5.13482 5.20528 5.23139 5.24579 5.29758 5.37681 5.40972 5.59734 5.74378 5.82830 6.00780 6.68043 7.33971 7.51385 8.84320 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.003395 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.769576 B = 8244.400664 C = 8456.262025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.044 4.044 3 C -0.601 4.601 4 S 2.611 3.389 5 O -0.993 6.993 6 O -0.988 6.988 7 N -1.038 6.038 8 C 0.133 3.867 9 C 0.213 3.787 10 O -0.592 6.592 11 C -0.551 4.551 12 H 0.081 0.919 13 C 0.025 3.975 14 N -0.923 5.923 15 Si 0.972 3.028 16 H -0.271 1.271 17 H -0.266 1.266 18 H -0.288 1.288 19 C 0.108 3.892 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.097 4.097 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.157 0.843 29 H 0.149 0.851 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.385 0.615 33 H 0.274 0.726 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -16.976 -11.490 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.046 4.046 3 C -0.734 4.734 4 S 2.713 3.287 5 O -0.984 6.984 6 O -0.979 6.979 7 N -0.876 5.876 8 C 0.008 3.992 9 C 0.170 3.830 10 O -0.404 6.404 11 C -0.590 4.590 12 H 0.099 0.901 13 C -0.175 4.175 14 N -0.564 5.564 15 Si 0.797 3.203 16 H -0.197 1.197 17 H -0.190 1.190 18 H -0.214 1.214 19 C -0.018 4.018 20 C -0.188 4.188 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.136 4.136 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.063 0.937 28 H 0.175 0.825 29 H 0.167 0.833 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.240 0.760 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.661 -17.699 -10.855 20.932 hybrid contribution 1.338 1.188 0.205 1.801 sum -1.323 -16.511 -10.650 19.692 Atomic orbital electron populations 1.22519 0.93824 1.04543 1.03212 1.20335 0.96003 0.89811 0.98473 1.30659 1.13761 1.08351 1.20653 1.04787 0.73817 0.72275 0.77782 1.93496 1.78598 1.78836 1.47480 1.93494 1.31015 1.84964 1.88458 1.59994 1.32643 1.23308 1.71703 1.23108 0.99128 0.78647 0.98289 1.20335 0.89134 0.90639 0.82888 1.86036 1.43139 1.82916 1.28303 1.21885 1.24119 1.15095 0.97923 0.90103 1.25867 0.96876 0.99633 0.95101 1.69434 1.38196 1.41804 1.06976 0.85336 0.78675 0.78244 0.78000 1.19653 1.19039 1.21401 1.23630 0.87031 0.92965 0.98181 1.22154 1.02196 0.98151 0.96320 1.21583 1.01290 0.93635 0.99286 1.21555 1.01016 0.99231 0.93732 1.21637 1.01475 0.94534 0.98326 1.21561 1.01148 0.95798 0.95051 0.90379 0.88825 0.93669 0.82532 0.83272 0.91613 0.86424 0.75997 0.91647 0.88419 0.93557 0.90598 0.93131 0.91270 0.91433 0.90591 0.91759 0.91126 0.90209 0.90337 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 7.30 71.98 0.53 -3.61 16 2 C -0.04 -0.96 0.54 -52.18 -0.03 -0.99 16 3 C -0.60 -14.35 5.18 71.98 0.37 -13.97 16 4 S 2.61 95.86 4.97 -56.49 -0.28 95.58 16 5 O -0.99 -42.77 15.64 -127.65 -2.00 -44.77 16 6 O -0.99 -40.96 15.64 -127.65 -2.00 -42.96 16 7 N -1.04 -42.06 3.99 -533.26 -2.13 -44.19 16 8 C 0.13 5.44 8.30 86.48 0.72 6.16 16 9 C 0.21 10.44 1.44 -10.88 -0.02 10.43 16 10 O -0.59 -32.64 13.48 -148.98 -2.01 -34.65 16 11 C -0.55 -27.33 8.62 25.60 0.22 -27.11 16 12 H 0.08 3.74 7.81 -2.91 -0.02 3.72 16 13 C 0.03 1.24 5.40 84.66 0.46 1.70 16 14 N -0.92 -48.37 11.09 21.45 0.24 -48.14 16 15 Si 0.97 39.40 29.54 68.60 2.03 41.43 16 16 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 17 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 18 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 19 C 0.11 4.81 8.31 86.48 0.72 5.52 16 20 C -0.15 -3.63 4.26 30.60 0.13 -3.50 16 21 C -0.12 -2.24 5.65 30.59 0.17 -2.07 16 22 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 23 C -0.12 -1.58 5.65 30.59 0.17 -1.41 16 24 C -0.10 -1.51 4.73 30.60 0.14 -1.36 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.68 4.81 -2.39 -0.01 1.67 16 27 H 0.04 1.28 5.46 -2.39 -0.01 1.27 16 28 H 0.16 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.15 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.12 3.88 8.09 -2.39 -0.02 3.86 16 32 H 0.39 21.66 6.46 -74.06 -0.48 21.18 16 33 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 34 H 0.10 3.85 8.09 -2.39 -0.02 3.83 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.53 5.46 -2.39 -0.01 1.52 16 38 H 0.07 1.24 6.43 -2.38 -0.02 1.22 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.88 6.43 -2.39 -0.02 0.86 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -66.31 352.03 -1.87 -68.18 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: 0.51 Total: 41.20 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 3.77 Total: -31.68 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -1.89 Total: -92.33 kcal Atomic # 8 Polarization: -116.37 SS G_CDS: -6.00 Total: -122.38 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 16 Polarization: 95.86 SS G_CDS: -0.28 Total: 95.58 kcal Total: -66.31 -1.87 -68.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332419485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.637 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds